mRNA_F-serratus_M_contig65.17485.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig65.17485.1
Unique NamemRNA_F-serratus_M_contig65.17485.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig65.17485.1 vs. uniprot
Match: D8LMI4_ECTSI (RpoD family RNA polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMI4_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 3.790e-9
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 2 
Query:  278 IINLYGLFGTGRKSTVAVSGAMGVSRQYVGRVHQTALDKLRASLEQRPGPR 430
            I++ YGLFG  RKST AV+  MGVSRQYVGRVH++AL+K+RAS E    PR
Sbjct:  164 IVHRYGLFGRRRKSTPAVAAVMGVSRQYVGRVHRSALEKMRASFEADQQPR 214
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BLAST of mRNA_F-serratus_M_contig65.17485.1 vs. uniprot
Match: A0A6H5K7U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.030e-8
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 2 
Query:  278 IINLYGLFGTGRKSTVAVSGAMGVSRQYVGRVHQTALDKLRASLEQRPGPR 430
            I++ YGLFG  RKST AV+  MGVSRQYVGRVH++AL+K+RAS E    PR
Sbjct:  413 IVHRYGLFGRRRKSTPAVAAVMGVSRQYVGRVHRSALEKMRASFEADQQPR 463
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig65.17485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMI4_ECTSI3.790e-964.71RpoD family RNA polymerase sigma factor n=1 Tax=Ec... [more]
A0A6H5K7U2_9PHAE1.030e-864.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig65contigF-serratus_M_contig65:892431..895762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size658
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig65.17485.1prot_F-serratus_M_contig65.17485.1Fucus serratus malepolypeptideF-serratus_M_contig65 893593..895563 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932002.0593166-UTR-F-serratus_M_contig65:892430..8924901622932002.0593166-UTR-F-serratus_M_contig65:892430..892490Fucus serratus maleUTRF-serratus_M_contig65 892431..892490 +
1690964096.8440132-UTR-F-serratus_M_contig65:892430..8924901690964096.8440132-UTR-F-serratus_M_contig65:892430..892490Fucus serratus maleUTRF-serratus_M_contig65 892431..892490 +
1622932002.0739226-UTR-F-serratus_M_contig65:893538..8935921622932002.0739226-UTR-F-serratus_M_contig65:893538..893592Fucus serratus maleUTRF-serratus_M_contig65 893539..893592 +
1690964096.8553712-UTR-F-serratus_M_contig65:893538..8935921690964096.8553712-UTR-F-serratus_M_contig65:893538..893592Fucus serratus maleUTRF-serratus_M_contig65 893539..893592 +
1622932002.1631944-UTR-F-serratus_M_contig65:895563..8957621622932002.1631944-UTR-F-serratus_M_contig65:895563..895762Fucus serratus maleUTRF-serratus_M_contig65 895564..895762 +
1690964096.889861-UTR-F-serratus_M_contig65:895563..8957621690964096.889861-UTR-F-serratus_M_contig65:895563..895762Fucus serratus maleUTRF-serratus_M_contig65 895564..895762 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932002.0914857-CDS-F-serratus_M_contig65:893592..8938711622932002.0914857-CDS-F-serratus_M_contig65:893592..893871Fucus serratus maleCDSF-serratus_M_contig65 893593..893871 +
1690964096.8671-CDS-F-serratus_M_contig65:893592..8938711690964096.8671-CDS-F-serratus_M_contig65:893592..893871Fucus serratus maleCDSF-serratus_M_contig65 893593..893871 +
1622932002.118228-CDS-F-serratus_M_contig65:895497..8955631622932002.118228-CDS-F-serratus_M_contig65:895497..895563Fucus serratus maleCDSF-serratus_M_contig65 895498..895563 +
1690964096.8790538-CDS-F-serratus_M_contig65:895497..8955631690964096.8790538-CDS-F-serratus_M_contig65:895497..895563Fucus serratus maleCDSF-serratus_M_contig65 895498..895563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig65.17485.1

>prot_F-serratus_M_contig65.17485.1 ID=prot_F-serratus_M_contig65.17485.1|Name=mRNA_F-serratus_M_contig65.17485.1|organism=Fucus serratus male|type=polypeptide|length=115bp
MLDVSDWGREIIASWPPAPIQLTQPAHPLPLRITHTYAHTSDRVRLSGMV
WFSADHQPLWTVRHGEKIDRGCFGRHGSQPAIRRPRAPDGPGQVASVPGT
ASRATCHDGEDEPQ*
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mRNA from alignment at F-serratus_M_contig65:892431..895762+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig65.17485.1 ID=mRNA_F-serratus_M_contig65.17485.1|Name=mRNA_F-serratus_M_contig65.17485.1|organism=Fucus serratus male|type=mRNA|length=3332bp|location=Sequence derived from alignment at F-serratus_M_contig65:892431..895762+ (Fucus serratus male)
GAAATTACAAAATTTCAAACAAAATACGAGTTTTCCAAGGGCATTTCGAA
ACTATCTATTGTATGGTCACACATATAGCAAGAGTATGGATCAACCTGGT
AAGGTTGTCAATCCTGCTTGTGGTCAGCTGAACAGGGAAAAAGAATATTC
CCCTGTCCGCGTTCGTGCCTGAGAATTTGGTCTCGCGAGACGGTTTCGGC
AGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATACCCAGGCTGAATCTGG
TGCTTACTTACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCATATATTT
ATATTAAACCGCCATACGCCATCGGGTAAGTCCCAAGTTTATCGGGTCAC
GCAATATTGCGTACCGATGGCGTTCACTGCCGAGAGTCCGTCGGCACAGG
GCCAGTAAACCTCAAGGTAGTTCCGAACGACTGCTGCCTTAGCAAGTCAC
TATGGACCAATTAATATACGCCTCTCTTTCCCACACCCACTATTGGTATG
AAGTGGGCATGTTGAAAGTAATATACTACTATAACTGCCTGGTTGGTGAG
AACCCTGACAAAGAGCTCCCCGGCATAGTAGGGGTGCGTGGAGAGACTGC
CTAGGACATATGGTACTATATTGCATGATGTGCGTCGTTAATTTTTAAAT
TTTGTTTTTTTGCCCTCTCACAGCCCCAGGGTGTTGAGTGGGAATGGCCT
GGTCGGCGTGAACCCGACGATGAACACTCCCCGGCATCGTAGGGGAGGGG
GATAGCGTCCTCTTCAAATTTAGTTTTGTACCTGTATTGGTACCCCTATA
TATATCTGTATTTCATTTTATTTTGTGACTCAGCTCCCGAGTTTGGAGCG
ATGGGCTCTACTTCCTTGTTGCGTTTTTTTTCTTGCCTCAACCTGCTTCT
TGTTTTCTGAACTTGTTATTATTATTATTTTATTTTATTTTTTGGCTAAT
GTTGGAACCTTCTCTGGGTCTTTTTATTTTATTTTATTTATTATTTTTTC
TGTACCTTAGTTTGGGTTAGCCTGTGACCACGGAAATTCGTTTCTTTGCC
TTGAAGAGTAAGAAAGAGAAGGTACTGGATAGAGGTCAGAACGGTTTTTA
ATGTGAAGACAACAACAACAACAATAGACTAATAGTACATACGTACTGTG
GTATGTTGGAGCATGTTAGACGTCTCTGATTGGGGTCGCGAGATAATCGC
TTCTTGGCCCCCCGCGCCGATCCAGCTAACCCAACCCGCCCATCCCCTAC
CACTCCGCATAACACACACGTACGCACACACTTCTGACCGTGTTCGATTG
TCCGGAATGGTTTGGTTTTCCGCAGATCATCAACCTCTATGGACTGTTCG
GCACGGGGAGAAAATCGACCGTGGCTGTTTCGGGCGCCATGGGAGTCAGC
CGGCAATACGTCGGCCGCGTGCACCAGACGGCCCTGGACAAGTGAGAGTC
TCTCGGGTTTGAGTTTTTTTTTTTTTTCGCGTCGAATTATCCTTCTCGGT
AGATGTCTGATCATTTTATACTGTACTTGGTACATATTGGCTCTCAACAC
AACAGGTACACGGCGTTGTAACCGTTTCTGACCGAAGACATCTTCCCGGT
AAAATAAAAAGCTGCAACTCCGCTTCCCGACGTCGCCCCATGGTTGCAAG
CCGTTCTGTCGGCGCTTCTGAAAGGGGGTTGCGTCCTGACACCGACCACG
CATCCGTCGCAAAGCAGTGTCGCAAATGCGAATGAGTTTATTATTACCGT
TTTTTAATTTTATTTTGTTTAAAAGAAAAATCAGAACAGCACCTAGACTT
TTTAAGCATCCCCCGTAGGGGGAAAGATATGTCAAAACGTTTAGGCGTTG
TCCCCCTCCTTCCCCATCCATTCTCCCTTCACAATGATTCAACGGACCAG
ATGCGGGTGGGGCCAGCAGGAATCGAACCCGAACTCCAGATGCAGTCTAT
TTTAGATCTATAATAGCGCTCGTGGCACGTAACAGGAGATACACTTTTCA
TCAGACAGACGTTTTCATACACCTGTAGTCTATGCCCGGATCTATATCAT
AGCGCAACTCAACGGTATGATTTTTCCCTGCCGTTGATGATGAACGAGCC
TTCTGAAAAATCGGCTGAGTCACCGTTGTGTCGCTGCTGTGGTTCTGGCG
GTGGATGGATGGATGGACCCATCGTCACAACCTTCCCTTCTTTTGATCGC
CCGAGTTAGCGTTAGCGTTAGTCCGGCTGGTGACCGTGTTTGATCCCCTT
GAAGAGTCTTGTCTTTCTGACGCACGCAGTCACAGTATTGCCAAGTCTGA
CTACTGTATTACTGTGCTGATAAATAGTCGCCCGAGTGATCTAGTAAGGA
ATAATAACCTGCAGACCTGCTCGTATTATAGGACGGAAGTCGTGAGTTCG
ATCCTTGTCAAACCAGAATTTGCGTTCTTTCTTCCGTAGTAATTGCGGAA
AGCGTGAGAACGTGAGTATGTAAGTAAAGTTCAACCATTGGTTGACGATG
TTGCAAGAGTGCTGAACTTGCATCGCGATAAAAATAAATCGTAAGGCGTG
AACCGGGGAGAGATGGGAAGGTCCTTAGGGACCACTGGCAGGATGGTAAT
GATGAGGTCCATCGGCTATACTAATAATAAGTGAGATGAAAAATAAAAAT
AAAATAAGAGCTAGCGAGGTACTGGTTAGCGGCAGGCGCGAGAAGTGGAC
GTAAGGTGTTGGGATGCTCTCAATTAACCACGCGATAAACCAGCCTAGGC
GGGGACCGGGCATCGATGGGAATAATTTCCAGGGGCGGCTACAGGTGTGC
GGAACGGCAGCGTTGCCGCTGGCGGGATTTTGATAACCTATCAGTTCACC
CACCAGCCCCTCGGTAGACGGCAAGAAAAAATAACCAACGACCACAAACC
GACCGGATACAACCCAAAGAAATAATCACTTGCCCCCACCACTTTGGCCT
ATATCGCGCGTGCTCCTGCGTCCCGGCAACCACGAGAACACACACGCTTG
AACTTTTAACCACGTTGATGCTGGTGCCCGCTGCCGGCCCCGCTTGTGGC
ACGTGTTCCTCACCCAGGTTGCGAGCGTCCCTGGAACAGCGTCCAGGGCC
ACGTGCCACGACGGTGAAGACGAGCCGCAGTAGCAGCAGCAACAGCAGTT
TCGGCAGAGATTCGAGGAAGGAATCGGCGGAGGAGCTCGTGCGGGCCGGT
ACACGCGTCGGTCAAGGCAAGCGGCGCGACCGCGATCGATCGAGGGCGGT
ATAGCAGCGGAAGCCGGCCCTGGCCTGGCCCGTGTTTTCGTTACCGCGCG
TAATTTAATGTTTCTCCGGGGGGAGATCCTAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig65:892431..895762+

>mRNA_F-serratus_M_contig65.17485.1 ID=mRNA_F-serratus_M_contig65.17485.1|Name=mRNA_F-serratus_M_contig65.17485.1|organism=Fucus serratus male|type=CDS|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig65:892431..895762+ (Fucus serratus male)
ATGTTAGACGTCTCTGATTGGGGTCGCGAGATAATCGCTTCTTGGCCCCC
CGCGCCGATCCAGCTAACCCAACCCGCCCATCCCCTACCACTCCGCATAA
CACACACGTACGCACACACTTCTGACCGTGTTCGATTGTCCGGAATGGTT
TGGTTTTCCGCAGATCATCAACCTCTATGGACTGTTCGGCACGGGGAGAA
AATCGACCGTGGCTGTTTCGGGCGCCATGGGAGTCAGCCGGCAATACGTC
GGCCGCGTGCACCAGACGGCCCTGGACAAATGTTAGACGTCTCTGATTGG
GGTCGCGAGATAATCGCTTCTTGGCCCCCCGCGCCGATCCAGCTAACCCA
ACCCGCCCATCCCCTACCACTCCGCATAACACACACGTACGCACACACTT
CTGACCGTGTTCGATTGTCCGGAATGGTTTGGTTTTCCGCAGATCATCAA
CCTCTATGGACTGTTCGGCACGGGGAGAAAATCGACCGTGGCTGTTTCGG
GCGCCATGGGAGTCAGCCGGCAATACGTCGGCCGCGTGCACCAGACGGCC
CTGGACAAGTTGCGAGCGTCCCTGGAACAGCGTCCAGGGCCACGTGCCAC
GACGGTGAAGACGAGCCGCAGTAGGTTGCGAGCGTCCCTGGAACAGCGTC
CAGGGCCACGTGCCACGACGGTGAAGACGAGCCGCAGTAG
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