mRNA_F-serratus_M_contig65.17484.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig65.17484.1
Unique NamemRNA_F-serratus_M_contig65.17484.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig65.17484.1 vs. uniprot
Match: A0A6H5K7U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U2_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 5.470e-7
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:  307 TAQQSLRSSVASLPRMTRDEELALAEDVQRWRSLERMRRNV-CRGGAATDGE------LQAWALAAGMSVA 498
            +A QSLR SVA LPR+ R++E  L +DVQRWR LE +R  V     +AT G+      L+AWA AAG+ VA
Sbjct:  153 SAMQSLRQSVAGLPRLNREDEATLCKDVQRWRRLEELRDEVSAEEASATGGDPGTRVGLEAWAAAAGVDVA 223
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig65.17484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7U2_9PHAE5.470e-750.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig65contigF-serratus_M_contig65:877545..881121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase sigma factor, region 2
Ec32 orthologEc-05_002860.1
Exons2
Model size501
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932002.0016553-CDS-F-serratus_M_contig65:877544..8778741622932002.0016553-CDS-F-serratus_M_contig65:877544..877874Fucus serratus maleCDSF-serratus_M_contig65 877545..877874 +
1690964096.8231359-CDS-F-serratus_M_contig65:877544..8778741690964096.8231359-CDS-F-serratus_M_contig65:877544..877874Fucus serratus maleCDSF-serratus_M_contig65 877545..877874 +
1622932002.015927-CDS-F-serratus_M_contig65:880952..8811201622932002.015927-CDS-F-serratus_M_contig65:880952..881120Fucus serratus maleCDSF-serratus_M_contig65 880953..881120 +
1690964096.8343499-CDS-F-serratus_M_contig65:880952..8811201690964096.8343499-CDS-F-serratus_M_contig65:880952..881120Fucus serratus maleCDSF-serratus_M_contig65 880953..881120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig65.17484.1prot_F-serratus_M_contig65.17484.1Fucus serratus malepolypeptideF-serratus_M_contig65 877545..881120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig65.17484.1

>prot_F-serratus_M_contig65.17484.1 ID=prot_F-serratus_M_contig65.17484.1|Name=mRNA_F-serratus_M_contig65.17484.1|organism=Fucus serratus male|type=polypeptide|length=166bp
ATARSNIFECLADNVSTASRSVDRNAARVLPSSSGSLFVGEPGDDHDVRA
ADISAHDGFERAVRGSRLDERNRRDSTRLGHASLATGRSGGGSRGKTGSS
ILTAQQSLRSSVASLPRMTRDEELALAEDVQRWRSLERMRRNVCRGGAAT
DGELQAWALAAGMSVA
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mRNA from alignment at F-serratus_M_contig65:877545..881121+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig65.17484.1 ID=mRNA_F-serratus_M_contig65.17484.1|Name=mRNA_F-serratus_M_contig65.17484.1|organism=Fucus serratus male|type=mRNA|length=3577bp|location=Sequence derived from alignment at F-serratus_M_contig65:877545..881121+ (Fucus serratus male)
GCCACTGCCCGATCTAATATATTTGAATGTTTGGCAGACAATGTAAGTAC
GGCTTCGAGATCGGTTGACCGCAACGCAGCACGAGTGTTACCGTCGTCTA
GCGGATCCCTTTTTGTTGGAGAACCGGGAGATGATCATGATGTTCGGGCG
GCGGATATCAGTGCGCATGATGGGTTCGAGAGAGCTGTGAGGGGGAGCCG
TTTGGATGAGAGGAACCGACGAGATTCGACAAGGCTTGGTCACGCGAGTT
TGGCTACTGGTCGTTCAGGTGGCGGGAGCCGTGGAAAGACTGGGAGCAGC
ATCCTCACGGCGCAGCAGAGCTTGAGAAGCGTGAGTGGTCAAAGCTTTAC
CTTCTCTGTACTTGTACAAACTGGTTTGATCGGGACGCAACTGCGCCCGC
TTCTGTCGTAAATGCCTAGATGTATGGTCACACATATAGCACGGGTTTGG
ACCAACCGGGTAAGGCTGCTAATCCTTCTCGAAAACCCTATTAAATTAAT
AGAGTAGCTGCACCGATAGAACCGATTCATCTCGTTGGACCTCCGGAATG
GAGGATTCTTCATTTGTGTTGCAACAGAATCGTCCCGATTTCCAGACTCT
CGATTCCAGATCATTTATTTTGGGATGGTGTTTGGATCGGAAGATTCTGG
TGTTTGGATGGGAAGATTCTGGCGGGCAATTTTCAAGTTCAGCCACACGC
CCTACTCCCCGCAGCAGAAACCCGGTCAGCAGAAACTGCAGCAGGCACGG
TCACAGTGAGCAACACTAGATTATTCCAAGACGAGCTGTGTAATTCATAC
TGGTAGTGAGAAATATTCGTTCTCCTGAGAGGATTCAGACGTGCTATTAA
CGCCCCTGTAGAGGTAGTCTACTAGTGTACCAAAAATAGCAGAGCGATGG
CAACATGATGGCGGAGGAGGCACCCAGACCATTTGTAGCGAGAAACTCTG
GAGACAGCGCTGCTGGAAGTATGCAGAATCTTCGATGAACAACTGGATTG
GATGCTCTCTCTTGTCAGTTATTGCATACAGCTGTGTTTTATGATGGTAT
CAATAATGTAGGAAAAGCTAGGAAAATACAATATTAATAGTATCATAGCC
GACCGCCCCAGTGAGAGCGAACAAGGTGGGGGAAGAAAAAGAAAAAAAAG
GTCGACCGCCCGTTTGGTCAAAAGGAACACGACATCGTAGCACGAGTCAT
GGTGCACGTGGTGTACAGCACAGCCCCAGAGTCGCGAGTCGTTGAAAGCT
CAACACCCAAGGCTCTGCGCGGTAAAACGCGACTGCTGTCCAGCCCTACA
ATTAGCAAGATTGACGTGGTCATGTCTCCGTAGCCCCCGCCGATCTCGCC
CTCTACAACCGCTAAACCAAGTGCACATTGCACCAAGGTTCGGCGTGTAT
CGTGGTGCGACAAGCGATGCCATGGTCGCATCGACGATGCACACCATTTA
TCCGTCGCTGCCTCGGTGTCTTCTCCTCTCTAGAAAGTAATCGAGGTCAT
TCGCGGCGATGGCGGCGTTTGCCCGGGGGCCACGCCGCGAGATCATGAGC
ACACCATGCTCAACAGGAATTCTAAACTTCGGCCGAAAGCCTCCCCGAGC
AGCACAAAAACCAAATTCCAGTAGGCCTGGGTCTCTCCAGAATCTAAACC
CCAAATCCAGGAGCCCCACGGCGCCTAGGTCTGGATTCTATGCTGGTGAG
ATCTGGGCCAAATATATGATGATATCATAATCAAGTATTCTTCAAATGTG
GCAACACATGTTAATGGATTCGGTCTCTGGAATCGTGCTAGGGCGGCCTA
GTTTTGTAAAGCAGGCCTCCAAATTTCCGGGGGGAGATTATGAAGCCCTC
CGAAATTGAGGATTTTGTATGATATGGTCAGGCTTTTAGCGCATCACGCC
CTATAGAGTATTTGCTAATTTGTTGTTGTCGAAGACCCCCGATCACACGC
CAAATCGTAGCAACATGAGCACCGGCAGCGCCAGAGACTCATACGAGACT
GATGCTATCATTTTGATGGAAAATTTGGAAGCCACGGTGCGCTGGCTGCT
GGGATCGCGCCCTCGCTGCTACGATGCTATTCTCTCGTGCATCATTTTGT
GCTCGAGAAGAGACGTCGCGGACGTGTCTCACTGTGGCACAGACGAATAG
GCGTACATCAGCGGTTGTAGTCTCTCCGAGGACATGCGTGACCCCACGAG
ATCAAGGCGCGCCGAGCGGCGAGGGAGAGGTTCAGGCATATATAGAGTAT
AGGCATGAAGTTCGTTCCTCCGACAGGTGCTTCTGCGATAGGTCGTCGCT
ACCGCAGATCATTTCCGTCGAGGCCACGTTTTTCCCATGCAATTTGTTTG
CTTTGAAGTGTAATTCGAGAGAACCTTATTTTTATTTTATTTTTTCCTAA
CCTGTGTGGAAAGGAAACCAATCAACAAAAGAGAGCAACAGCAACAAAAA
TGCTTAGCCCGTCGATGCCCCAGCCGAAAGCGCGTTGGATTTTAATTCAT
TACTGTACATCCGCCTCACGATGTTACCCCCAAAGTCTCATCGGTCCTCA
TGAGCTCTTGCATTGTTTTGATTTCGCGGCATCCCCTGCCTCTGCCGACG
TCACTCGTACCCAATCCAATCTCCAACGTCCCGTCGAATAGGAAAGTGTG
ATAAGCGCAGTGTCGGTGGTCAGCCGAAACCGAATCCAGCCCGTTTCCAG
AAATCTGGATTATCAGATTCCCAGCGCCGCAGGAACCGGCCTGAGTCAGT
TGATGTACCTTACTGGTAGCCCTTTTTCTATAGATCAGGTACAGTACTGA
ACTCAGCTCTTGACGCAGTACAGGGAACGCTGAGAACATGCGACACATCC
GACTACTCTGTCGAGAGGAACCCGACGATAAAGGTCTCTTCTCCCTGTCT
CTGTTTCTTGATCGTTGTCTGAAGCGGTCCATGTAGCAATGCAATCGCTG
GCACGAAGAAGAGGAAAAGGTGCCACCGAAACGCCTTTCGTAGGGTTTCC
ACCCAGTGATGATACTTCTAGATGCAGTGATGATGGTTACGATTATGGTA
TGCGTGGTCGGCACTTTCAGCAGAGCATGGATCGACCGGGCATACGGTTG
CCAACTCTGCTCGTGGCCAGCTGAACAGGGAAATTGAAAATTCCCCTGTC
CCCGTTCGCGCCCGAGAATTTCGTCTCGCGAGAAAGGTTCGGCCGTCCAG
CCCCGCATCAGCCCACTCATTCTCCACACTCGGGCTGAATCTGGGGATAT
GATGGTATGAATGCCGCACCATCCTCTCTCCCTTCTAAGCTTTTGATTAC
GAAGCCCTGCCGCTCCCTCCCTCTCCCGACACATGTTTCCACTCCCCCCC
CCCCCCCCCCCCCACCGCCTGCTCTCCCCCCTATGATTAATCTCAACGAG
ACGCACAGAGTGTTGCCTCGTTGCCGAGGATGACCCGAGACGAAGAACTC
GCCCTCGCCGAAGACGTTCAAAGATGGCGGAGCCTGGAGCGGATGCGTCG
AAACGTCTGCCGCGGGGGGGCGGCGACAGACGGAGAACTTCAGGCGTGGG
CCTTGGCTGCAGGCATGAGCGTCGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig65:877545..881121+

>mRNA_F-serratus_M_contig65.17484.1 ID=mRNA_F-serratus_M_contig65.17484.1|Name=mRNA_F-serratus_M_contig65.17484.1|organism=Fucus serratus male|type=CDS|length=996bp|location=Sequence derived from alignment at F-serratus_M_contig65:877545..881121+ (Fucus serratus male)
GCCACTGCCCGATCTAATATATTTGAATGTTTGGCAGACAATGTAAGTAC
GGCTTCGAGATCGGTTGACCGCAACGCAGCACGAGTGTTACCGTCGTCTA
GCGGATCCCTTTTTGTTGGAGAACCGGGAGATGATCATGATGTTCGGGCG
GCGGATATCAGTGCGCATGATGGGTTCGAGAGAGCTGTGAGGGGGAGCCG
TTTGGATGAGAGGAACCGACGAGATTCGACAAGGCTTGGTCACGCGAGTT
TGGCTACTGGTCGTTCAGGTGGCGGGAGCCGTGGAAAGACTGGGAGCAGC
ATCCTCACGGCGCAGCAGAGCTTGAGAAGCGCCACTGCCCGATCTAATAT
ATTTGAATGTTTGGCAGACAATGTAAGTACGGCTTCGAGATCGGTTGACC
GCAACGCAGCACGAGTGTTACCGTCGTCTAGCGGATCCCTTTTTGTTGGA
GAACCGGGAGATGATCATGATGTTCGGGCGGCGGATATCAGTGCGCATGA
TGGGTTCGAGAGAGCTGTGAGGGGGAGCCGTTTGGATGAGAGGAACCGAC
GAGATTCGACAAGGCTTGGTCACGCGAGTTTGGCTACTGGTCGTTCAGGT
GGCGGGAGCCGTGGAAAGACTGGGAGCAGCATCCTCACGGCGCAGCAGAG
CTTGAGAAGCAGTGTTGCCTCGTTGCCGAGGATGACCCGAGACGAAGAAC
TCGCCCTCGCCGAAGACGTTCAAAGATGGCGGAGCCTGGAGCGGATGCGT
CGAAACGTCTGCCGCGGGGGGGCGGCGACAGACGGAGAACTTCAGGCGTG
GGCCTTGGCTGCAGGCATGAGCGTCGCGAGTGTTGCCTCGTTGCCGAGGA
TGACCCGAGACGAAGAACTCGCCCTCGCCGAAGACGTTCAAAGATGGCGG
AGCCTGGAGCGGATGCGTCGAAACGTCTGCCGCGGGGGGGCGGCGACAGA
CGGAGAACTTCAGGCGTGGGCCTTGGCTGCAGGCATGAGCGTCGCG
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