mRNA_F-serratus_M_contig65.17478.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig65.17478.1
Unique NamemRNA_F-serratus_M_contig65.17478.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig65.17478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig65contigF-serratus_M_contig65:588117..590109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size550
Cds size549
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig65.17478.1prot_F-serratus_M_contig65.17478.1Fucus serratus malepolypeptideF-serratus_M_contig65 588117..590109 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932001.7369177-CDS-F-serratus_M_contig65:588116..5882141622932001.7369177-CDS-F-serratus_M_contig65:588116..588214Fucus serratus maleCDSF-serratus_M_contig65 588117..588214 -
1690964096.701736-CDS-F-serratus_M_contig65:588116..5882141690964096.701736-CDS-F-serratus_M_contig65:588116..588214Fucus serratus maleCDSF-serratus_M_contig65 588117..588214 -
1622932001.758074-CDS-F-serratus_M_contig65:588600..5887411622932001.758074-CDS-F-serratus_M_contig65:588600..588741Fucus serratus maleCDSF-serratus_M_contig65 588601..588741 -
1690964096.7136686-CDS-F-serratus_M_contig65:588600..5887411690964096.7136686-CDS-F-serratus_M_contig65:588600..588741Fucus serratus maleCDSF-serratus_M_contig65 588601..588741 -
1622932001.7776508-CDS-F-serratus_M_contig65:589418..5895531622932001.7776508-CDS-F-serratus_M_contig65:589418..589553Fucus serratus maleCDSF-serratus_M_contig65 589419..589553 -
1690964096.7248106-CDS-F-serratus_M_contig65:589418..5895531690964096.7248106-CDS-F-serratus_M_contig65:589418..589553Fucus serratus maleCDSF-serratus_M_contig65 589419..589553 -
1622932001.7982755-CDS-F-serratus_M_contig65:589934..5901091622932001.7982755-CDS-F-serratus_M_contig65:589934..590109Fucus serratus maleCDSF-serratus_M_contig65 589935..590109 -
1690964096.7361119-CDS-F-serratus_M_contig65:589934..5901091690964096.7361119-CDS-F-serratus_M_contig65:589934..590109Fucus serratus maleCDSF-serratus_M_contig65 589935..590109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig65.17478.1

>prot_F-serratus_M_contig65.17478.1 ID=prot_F-serratus_M_contig65.17478.1|Name=mRNA_F-serratus_M_contig65.17478.1|organism=Fucus serratus male|type=polypeptide|length=183bp
MSVWIFGGLESRKTAHAGKVSTAKNEGGSTRGGGNRYAVKSRNIDDGKDR
DATSPLRQDWSGDRTKHGGCCYGNKIDRSAQGGEPTCLSTAGLSRKSIGT
HTNGSRKHASGVSSTTSDGGSTTGGGSRYAVSRRSIDEGNYRDITTQLWH
DWSVVRPKYGGCCCGSKIDRSVHSGEQTSMSTA
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mRNA from alignment at F-serratus_M_contig65:588117..590109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig65.17478.1 ID=mRNA_F-serratus_M_contig65.17478.1|Name=mRNA_F-serratus_M_contig65.17478.1|organism=Fucus serratus male|type=mRNA|length=1993bp|location=Sequence derived from alignment at F-serratus_M_contig65:588117..590109- (Fucus serratus male)
ATGTCGGTATGGATTTTTGGCGGTCTAGAGTCTCGGAAAACGGCTCATGC
CGGCAAGGTTTCAACCGCTAAGAACGAGGGAGGAAGCACCAGGGGCGGTG
GCAACCGTTACGCTGTCAAGAGCAGAAATATCGACGACGGCAAAGACAGA
GATGCCACGTCACCACTTCGGCAAGGTGCGGCCAGATGTCGGTTTCCTCC
TGCTGTGTCTCTGAACGATTTTTACGTACCTTACCACCCAGCTGCCGATG
TTGCTGTCGGCAGTGGCGCGAGTACCAGAAGCTGTTGTCTGTATATATAC
ATTATATCATAAAGACGTTTTATAGACCAGCTCCTCTCCGTCTAGGGAAG
AGCTACGTGTAACATGGAAACGTAGCGGTCCTCTTCGGGGGGTTAGGGTT
TGGGGTTGGGGGGGGGCGGGTTCTCGACTCGTCGTCAACAAACCATGGAT
TGATTGAAACCCCGCTTACTTGATCCTCCGACGGATCCAAGGTACCTTCT
TGCTGACAGCATGTGGTGAGATAGCATCAAACACCCTAAGAACCCTCTTG
CTGCAGATTGGAGTGGTGACCGGACGAAGCATGGAGGATGTTGCTACGGG
AACAAGATCGACAGATCCGCGCAGGGGGGCGAGCCGACGTGTCTGTCTAC
CGCAGGGCTGTCGAGGAAGTCGATCGGGACACACACCAATGGTGCGCAAT
CTCTCAACGGACTCGTTTGAAGATGGCGTAACACAGATCTCTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTATTTATTAAATTGCACATAACCGCGCAG
TCCGGCCCTGTCATCCTAGTCATTCTATGCCACTCGCATTGATCCTCCCG
AGGGGGGATCAATGATACTTATTGCGAATGTGTGTGTGTGTCTACGGTTC
ATCGGGATTCGTATGCAAGCTGGTTGGAGACAGCTCCACCCTTTGGCATC
CAAATAGTACCTCCCAGCATCCATTCACAGTGAAGCACCTGTTATACTGT
CTCCCGAAAGCTCAATGGTAGTAGAGCTCCCGGTTGTACATTGCTACAGA
TGGAGGAGTATACTATCCCCTGGGGACAACGGTCTCTTCGTCTCCCCCCT
TCTCCCACTTCCTTTTTCACGACAATGAACAGGTGGTTTTCCTGAAAAAC
GCGGGTTTTTGTAAAAGGTTTCGTCCGACTTCGGCACCATTGCCTGTTGC
ACAGCTTCGCCTGCGGCAAATTCATCCGGCTGATAAGACTATTGATGGGT
GATTTGTGCTGGCGCCGACCGACTGACGAATGATTACGCGGTACAGTCGG
GTGGGACTTAACCCTACTTACCTCATTCTCCGCCACGTCCATGTCGGTAT
GGACATTTGCTGTTCTAGGGTCTCGGAAACATGCCAGCGGCGTTTCAAGC
ACTACGAGCGACGGAGGAAGCACCACGGGCGGTGGCAGCCGTTACGCTGT
CAGTAGAAGAAGCATCGACGAAGGCAACTACAGAGATATCACGACACAAC
TTTGGCATGGTGCGGCCGGGTATTGGTTTCCTCGTGCTGTGTCTCTGAAT
GCTTTATACGTACCCTTATCACCCAGCTGCCGATGTTGCTGTCGGCAGTG
GCGCGAGTGCTAGGAGCTGTTGTCGGTATATATACATTATACCATAAACA
TGTTTTGTAGACCAGCTCCCCCCCATCTAGGGAAGAGCTACGCGTAACAT
GGAAACATAGCGGTCTTCTTCAGGGGGGTTGGGGTTGGGTGAGGGGGGGG
GGGTTCTCAACCCGTCGTCAACAAATCATGGATTGATTAAAACCACGCTT
ACTCGATCCTCCGACGGATTCAAGGTGCCTCCTATTAATAGCAGACAGCA
TTTGATTGGATATCATCAAACACCCTAAGAACCCTCTTGCTGCAGATTGG
AGTGTTGTTCGGCCGAAGTATGGAGGATGTTGCTGCGGGAGCAAGATCGA
CAGATCCGTGCACAGTGGAGAGCAGACGTCTATGTCTACCGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig65:588117..590109-

>mRNA_F-serratus_M_contig65.17478.1 ID=mRNA_F-serratus_M_contig65.17478.1|Name=mRNA_F-serratus_M_contig65.17478.1|organism=Fucus serratus male|type=CDS|length=1098bp|location=Sequence derived from alignment at F-serratus_M_contig65:588117..590109- (Fucus serratus male)
ATGTCGGTATGGATTTTTGGCGGTCTAGAGTCTCGGAAAACGGCTCATGC
CGGCAAGGTTTCAACCGCTAAGAACGAGGGAGGAAGCACCAGGGGCGGTG
GCAACCGTTACGCTGTCAAGAGCAGAAATATCGACGACGGCAAAGACAGA
GATGCCACGTCACCACTTCGGCAAGATGTCGGTATGGATTTTTGGCGGTC
TAGAGTCTCGGAAAACGGCTCATGCCGGCAAGGTTTCAACCGCTAAGAAC
GAGGGAGGAAGCACCAGGGGCGGTGGCAACCGTTACGCTGTCAAGAGCAG
AAATATCGACGACGGCAAAGACAGAGATGCCACGTCACCACTTCGGCAAG
ATTGGAGTGGTGACCGGACGAAGCATGGAGGATGTTGCTACGGGAACAAG
ATCGACAGATCCGCGCAGGGGGGCGAGCCGACGTGTCTGTCTACCGCAGG
GCTGTCGAGGAAGTCGATCGGGACACACACCAATGATTGGAGTGGTGACC
GGACGAAGCATGGAGGATGTTGCTACGGGAACAAGATCGACAGATCCGCG
CAGGGGGGCGAGCCGACGTGTCTGTCTACCGCAGGGCTGTCGAGGAAGTC
GATCGGGACACACACCAATGGGTCTCGGAAACATGCCAGCGGCGTTTCAA
GCACTACGAGCGACGGAGGAAGCACCACGGGCGGTGGCAGCCGTTACGCT
GTCAGTAGAAGAAGCATCGACGAAGGCAACTACAGAGATATCACGACACA
ACTTTGGCATGGGTCTCGGAAACATGCCAGCGGCGTTTCAAGCACTACGA
GCGACGGAGGAAGCACCACGGGCGGTGGCAGCCGTTACGCTGTCAGTAGA
AGAAGCATCGACGAAGGCAACTACAGAGATATCACGACACAACTTTGGCA
TGATTGGAGTGTTGTTCGGCCGAAGTATGGAGGATGTTGCTGCGGGAGCA
AGATCGACAGATCCGTGCACAGTGGAGAGCAGACGTCTATGTCTACCGCA
ATTGGAGTGTTGTTCGGCCGAAGTATGGAGGATGTTGCTGCGGGAGCAAG
ATCGACAGATCCGTGCACAGTGGAGAGCAGACGTCTATGTCTACCGCA
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