mRNA_F-serratus_M_contig65.17467.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig65.17467.1
Unique NamemRNA_F-serratus_M_contig65.17467.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig65.17467.1 vs. uniprot
Match: A0A6H5KCR6_9PHAE (DUF547 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR6_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.560e-19
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 2 
Query:    2 EGEDELVRCPAYLDLYARSPKLKGKWTVFCVVKRGSGGG--FSLRSAKNLSIL 154
            + E+ +VRCPAY+DLYARSPKLKG WTVFCVVKRG+GGG  F+LRS+KNLSIL
Sbjct:  944 DAEEAMVRCPAYVDLYARSPKLKGTWTVFCVVKRGAGGGGEFALRSSKNLSIL 996
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BLAST of mRNA_F-serratus_M_contig65.17467.1 vs. uniprot
Match: D8LMK0_ECTSI (DUF547 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK0_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.010e-18
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 2 
Query:    2 EGEDELVRCPAYLDLYARSPKLKGKWTVFCVVKRGSGGG----FSLRSAKNLSIL 154
            + E+ +VRCPAY+DLYARSPKLKG WTVFCVV+RG GGG    F+LRS+KNLSIL
Sbjct: 1037 DAEEAMVRCPAYVDLYARSPKLKGTWTVFCVVRRGEGGGGGGEFALRSSKNLSIL 1091
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig65.17467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCR6_9PHAE1.560e-1977.36DUF547 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LMK0_ECTSI1.010e-1872.73DUF547 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig65contigF-serratus_M_contig65:374912..375316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size157
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932001.3112006-CDS-F-serratus_M_contig65:374911..3749351622932001.3112006-CDS-F-serratus_M_contig65:374911..374935Fucus serratus maleCDSF-serratus_M_contig65 374912..374935 +
1690964096.524998-CDS-F-serratus_M_contig65:374911..3749351690964096.524998-CDS-F-serratus_M_contig65:374911..374935Fucus serratus maleCDSF-serratus_M_contig65 374912..374935 +
1622932001.329874-CDS-F-serratus_M_contig65:375184..3753161622932001.329874-CDS-F-serratus_M_contig65:375184..375316Fucus serratus maleCDSF-serratus_M_contig65 375185..375316 +
1690964096.5357616-CDS-F-serratus_M_contig65:375184..3753161690964096.5357616-CDS-F-serratus_M_contig65:375184..375316Fucus serratus maleCDSF-serratus_M_contig65 375185..375316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig65.17467.1prot_F-serratus_M_contig65.17467.1Fucus serratus malepolypeptideF-serratus_M_contig65 374912..375316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig65.17467.1

>prot_F-serratus_M_contig65.17467.1 ID=prot_F-serratus_M_contig65.17467.1|Name=mRNA_F-serratus_M_contig65.17467.1|organism=Fucus serratus male|type=polypeptide|length=52bp
RRRRRVSSVPSLPRPVRSEPEAQGQVDGVLRGEAGLGRWLLPQISKEFVD
TA
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mRNA from alignment at F-serratus_M_contig65:374912..375316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig65.17467.1 ID=mRNA_F-serratus_M_contig65.17467.1|Name=mRNA_F-serratus_M_contig65.17467.1|organism=Fucus serratus male|type=mRNA|length=405bp|location=Sequence derived from alignment at F-serratus_M_contig65:374912..375316+ (Fucus serratus male)
CGAAGGAGAAGACGAGTTAGTTCGGTGAGATTATTTTTTGGATGTGGCGT
TTTCGTTGTCCGACTTCTTTTTGGCACTAGTGTAAGGCGACAGCGGATAA
CGAGTTTTATCTCTGGAGGGACGTGCTTGAATCTCAAATCTGGACAGAAT
ATGCTCGTACCAGGTATATGTTGAGCACCCCGTGAAAGGTTGCCTTGAGG
ATACCGTTGTAAAATCCAGAAGAGCCTTGTCCCTCACCGACGCGGGTCCT
TGCTGATCCTTCATTCGTTGAAGGTGCCCAGCCTACCTCGACCTGTACGC
TCGGAGCCCGAAGCTCAAGGGCAAGTGGACGGTGTTCTGCGTGGTGAAGC
GGGGCTCGGGCGGTGGCTTCTCCCTCAGATCAGCAAAGAATTTGTCGATA
CTGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig65:374912..375316+

>mRNA_F-serratus_M_contig65.17467.1 ID=mRNA_F-serratus_M_contig65.17467.1|Name=mRNA_F-serratus_M_contig65.17467.1|organism=Fucus serratus male|type=CDS|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig65:374912..375316+ (Fucus serratus male)
CGAAGGAGAAGACGAGTTAGTTCGCGAAGGAGAAGACGAGTTAGTTCGGT
GCCCAGCCTACCTCGACCTGTACGCTCGGAGCCCGAAGCTCAAGGGCAAG
TGGACGGTGTTCTGCGTGGTGAAGCGGGGCTCGGGCGGTGGCTTCTCCCT
CAGATCAGCAAAGAATTTGTCGATACTGCCGTGCCCAGCCTACCTCGACC
TGTACGCTCGGAGCCCGAAGCTCAAGGGCAAGTGGACGGTGTTCTGCGTG
GTGAAGCGGGGCTCGGGCGGTGGCTTCTCCCTCAGATCAGCAAAGAATTT
GTCGATACTGCC
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