mRNA_F-serratus_M_contig65.17455.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig65.17455.1
Unique NamemRNA_F-serratus_M_contig65.17455.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig65.17455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig65contigF-serratus_M_contig65:11551..12672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size692
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig65.17455.1prot_F-serratus_M_contig65.17455.1Fucus serratus malepolypeptideF-serratus_M_contig65 11583..12498 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932001.0732844-UTR-F-serratus_M_contig65:11550..115821622932001.0732844-UTR-F-serratus_M_contig65:11550..11582Fucus serratus maleUTRF-serratus_M_contig65 11551..11582 +
1690964096.4081798-UTR-F-serratus_M_contig65:11550..115821690964096.4081798-UTR-F-serratus_M_contig65:11550..11582Fucus serratus maleUTRF-serratus_M_contig65 11551..11582 +
1622932001.1173806-UTR-F-serratus_M_contig65:12498..126721622932001.1173806-UTR-F-serratus_M_contig65:12498..12672Fucus serratus maleUTRF-serratus_M_contig65 12499..12672 +
1690964096.4496524-UTR-F-serratus_M_contig65:12498..126721690964096.4496524-UTR-F-serratus_M_contig65:12498..12672Fucus serratus maleUTRF-serratus_M_contig65 12499..12672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932001.0909832-CDS-F-serratus_M_contig65:11582..119801622932001.0909832-CDS-F-serratus_M_contig65:11582..11980Fucus serratus maleCDSF-serratus_M_contig65 11583..11980 +
1690964096.4262872-CDS-F-serratus_M_contig65:11582..119801690964096.4262872-CDS-F-serratus_M_contig65:11582..11980Fucus serratus maleCDSF-serratus_M_contig65 11583..11980 +
1622932001.1059823-CDS-F-serratus_M_contig65:12410..124981622932001.1059823-CDS-F-serratus_M_contig65:12410..12498Fucus serratus maleCDSF-serratus_M_contig65 12411..12498 +
1690964096.4385772-CDS-F-serratus_M_contig65:12410..124981690964096.4385772-CDS-F-serratus_M_contig65:12410..12498Fucus serratus maleCDSF-serratus_M_contig65 12411..12498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig65.17455.1

>prot_F-serratus_M_contig65.17455.1 ID=prot_F-serratus_M_contig65.17455.1|Name=mRNA_F-serratus_M_contig65.17455.1|organism=Fucus serratus male|type=polypeptide|length=162bp
MKQIMGCYHLHIERTQTEKIHRWEIIVCSLLSASFAPPPSARPAPRRSHP
SSPASMAPPVFFLSLFLFCRPSTLFVWRPHRPPSLCTPVLVLIFFLERKA
QPDLPPVDNRFSILSPTPAYIPGALPRVGVHLSFRQQCHLPLAHTLNRRT
CPRMEHWHVLS*
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mRNA from alignment at F-serratus_M_contig65:11551..12672+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig65.17455.1 ID=mRNA_F-serratus_M_contig65.17455.1|Name=mRNA_F-serratus_M_contig65.17455.1|organism=Fucus serratus male|type=mRNA|length=1122bp|location=Sequence derived from alignment at F-serratus_M_contig65:11551..12672+ (Fucus serratus male)
AAAGTTTGCCCAGAGTGTCCTATACCTCAACCATGAAGCAAATCATGGGA
TGCTACCATCTGCACATTGAAAGAACACAGACTGAAAAAATTCATCGGTG
GGAAATAATCGTCTGCTCTCTCTTATCTGCTTCCTTCGCTCCTCCTCCTT
CAGCGAGGCCGGCCCCCAGGCGCTCCCATCCGTCCTCACCAGCGTCCATG
GCCCCGCCTGTGTTCTTCTTGTCGTTGTTCCTGTTCTGTCGCCCCTCTAC
TCTCTTCGTGTGGCGACCACACCGTCCTCCTTCGTTATGCACTCCGGTTC
TAGTCTTGATTTTTTTTCTCGAACGAAAGGCTCAACCAGACCTCCCGCCC
GTCGACAACCGCTTCTCCATCCTGTCGCCGACTCCAGCCTACATACCGGG
CGCACTCCCTCGTGTAGGGGTACATTTAAGGTTGCCAATCCTGCTCGTGG
TCAGCTAAACAGAGAAAATAATATTCCCCTGTCCGCGTTCGCGCCTGGGA
ATTTGGTCTCGCGAGACGGTTTCGGCAGTCCCGTCCCGCGTCAGCCTGCT
CATCTCCATACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCG
AGTTCCGCGGCGGCGTCCATATAATAATATTAAACCGCCATACGCCATCG
GGTCAGTCGAGTAAATCGGGTCACGCGATTGCGTACCGATGGCGTTCACT
GCCGAGAATCCGCCGGCACGGGGCCAGCATACCTCAAGGTAGTTTCAAAC
GAGTGCTGCCTTCGCAGGTCACTATGGACCAATTAATATACGCCTTTCTT
TCCCACACCCACTATTGGTTATGAAGTGGGCATGTTGAAAGCAACGGCGA
TACATATCAGCTTTCGGCAGCAGTGCCATCTGCCTCTCGCGCACACACTG
AATCGCCGAACATGTCCGCGCATGGAGCACTGGCATGTACTGAGTTAACA
GGGGTCGTGTGTGCCTGATGGACACTGCGCTGACCCATCTCTACCGCTGC
ACCTCGACCAGGGCCGGGGCAGCAGCAAGAAGGAATCATTCTCCTTGAGG
GTGAGTCCGGCCTTACACCCGCCAGAAAGACCCTCCCCACGTCGCGCCGA
CATGGCCGGTCATGGCCATGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig65:11551..12672+

>mRNA_F-serratus_M_contig65.17455.1 ID=mRNA_F-serratus_M_contig65.17455.1|Name=mRNA_F-serratus_M_contig65.17455.1|organism=Fucus serratus male|type=CDS|length=972bp|location=Sequence derived from alignment at F-serratus_M_contig65:11551..12672+ (Fucus serratus male)
ATGAAGCAAATCATGGGATGCTACCATCTGCACATTGAAAGAACACAGAC
TGAAAAAATTCATCGGTGGGAAATAATCGTCTGCTCTCTCTTATCTGCTT
CCTTCGCTCCTCCTCCTTCAGCGAGGCCGGCCCCCAGGCGCTCCCATCCG
TCCTCACCAGCGTCCATGGCCCCGCCTGTGTTCTTCTTGTCGTTGTTCCT
GTTCTGTCGCCCCTCTACTCTCTTCGTGTGGCGACCACACCGTCCTCCTT
CGTTATGCACTCCGGTTCTAGTCTTGATTTTTTTTCTCGAACGAAAGGCT
CAACCAGACCTCCCGCCCGTCGACAACCGCTTCTCCATCCTGTCGCCGAC
TCCAGCCTACATACCGGGCGCACTCCCTCGTGTAGGGGTACATTTAAGAT
GAAGCAAATCATGGGATGCTACCATCTGCACATTGAAAGAACACAGACTG
AAAAAATTCATCGGTGGGAAATAATCGTCTGCTCTCTCTTATCTGCTTCC
TTCGCTCCTCCTCCTTCAGCGAGGCCGGCCCCCAGGCGCTCCCATCCGTC
CTCACCAGCGTCCATGGCCCCGCCTGTGTTCTTCTTGTCGTTGTTCCTGT
TCTGTCGCCCCTCTACTCTCTTCGTGTGGCGACCACACCGTCCTCCTTCG
TTATGCACTCCGGTTCTAGTCTTGATTTTTTTTCTCGAACGAAAGGCTCA
ACCAGACCTCCCGCCCGTCGACAACCGCTTCTCCATCCTGTCGCCGACTC
CAGCCTACATACCGGGCGCACTCCCTCGTGTAGGGGTACATTTAAGCTTT
CGGCAGCAGTGCCATCTGCCTCTCGCGCACACACTGAATCGCCGAACATG
TCCGCGCATGGAGCACTGGCATGTACTGAGTTAACTTTCGGCAGCAGTGC
CATCTGCCTCTCGCGCACACACTGAATCGCCGAACATGTCCGCGCATGGA
GCACTGGCATGTACTGAGTTAA
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