mRNA_F-serratus_M_contig6496.17451.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6496.17451.1
Unique NamemRNA_F-serratus_M_contig6496.17451.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6496.17451.1 vs. uniprot
Match: A0A1E7F0G0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.110e-19
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:    2 GVNRHSDKHAPRNIPEAQDAFKILMIHWILQVARRIAFRCVLHRCGSQDIRR 157
            G++RHSDKHA   IP+AQ AFKILMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:    3 GIHRHSDKHATGKIPKAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 54
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BLAST of mRNA_F-serratus_M_contig6496.17451.1 vs. uniprot
Match: A0A524MI88_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A524MI88_9PROT)

HSP 1 Score: 78.2 bits (191), Expect = 3.980e-17
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 2 
Query:    2 GVNRHSDKHAPRNIPEAQDAFKILMIHWILQVARRIAFRCVLHRCGSQDIRR 157
            GV+ HS +HA  +IPEAQ AFKILMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:   68 GVHEHSTRHATGHIPEAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 119
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BLAST of mRNA_F-serratus_M_contig6496.17451.1 vs. uniprot
Match: B8CEF4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEF4_THAPS)

HSP 1 Score: 75.1 bits (183), Expect = 2.300e-16
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:    2 GVNRHSDKHAPRNIPEAQDAFKILMIHWILQVARRIAFRCVLHRCGSQDI 151
            GV+ HSDKHA  + P+AQ AFK LMIH +LQ A RIAFRCVLHRCG QDI
Sbjct:   28 GVSGHSDKHALGHYPKAQCAFKSLMIHEVLQFALRIAFRCVLHRCGIQDI 77
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BLAST of mRNA_F-serratus_M_contig6496.17451.1 vs. uniprot
Match: K0S3C5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3C5_THAOC)

HSP 1 Score: 74.7 bits (182), Expect = 2.720e-16
Identity = 36/50 (72.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:    2 GVNRHSDKHAPRNIPEAQDAFKILMIHWILQVARRIAFRCVLHRCGSQDI 151
            GV  HSDKHA  N P+AQ AFKILMIH +LQ   RIA RCVLHRCG QDI
Sbjct:   21 GVQGHSDKHALGNYPKAQCAFKILMIHEVLQFVLRIAVRCVLHRCGIQDI 70
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BLAST of mRNA_F-serratus_M_contig6496.17451.1 vs. uniprot
Match: K5UIC4_PHACS (Uncharacterized protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5UIC4_PHACS)

HSP 1 Score: 67.0 bits (162), Expect = 2.280e-13
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   43 PGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQRYMV 183
            PGSARCVQ FDDSL+SA   TYRISLRSSS+ EPR P LKV+ R +V
Sbjct:    6 PGSARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVVYRCVV 52
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BLAST of mRNA_F-serratus_M_contig6496.17451.1 vs. uniprot
Match: A0A1Y2ACV0_9TREE (Uncharacterized protein n=1 Tax=Naematelia encephala TaxID=71784 RepID=A0A1Y2ACV0_9TREE)

HSP 1 Score: 64.3 bits (155), Expect = 2.930e-12
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   43 PGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQRYMVE 186
            P  ARCVQ FDDSL+SA   TYRISLRSSS+ EPR P LKVL  Y+++
Sbjct:    6 PKGARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVLLDYIID 53
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BLAST of mRNA_F-serratus_M_contig6496.17451.1 vs. uniprot
Match: A0A0E9NCQ7_SAICN (Uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NCQ7_SAICN)

HSP 1 Score: 68.2 bits (165), Expect = 3.290e-12
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   43 PGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 168
            PGSA CVQ FDDSL+SA   TYRISLRSSS+WEPR P LKVL
Sbjct:  127 PGSAMCVQRFDDSLNSAIHITYRISLRSSSMWEPRDPLLKVL 168
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BLAST of mRNA_F-serratus_M_contig6496.17451.1 vs. uniprot
Match: R1EX34_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EX34_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 6.780e-12
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   16 LRQACSQEYPGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 168
            L + C +  PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS  V+
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPSAGVV 55
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BLAST of mRNA_F-serratus_M_contig6496.17451.1 vs. uniprot
Match: R1ESX1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ESX1_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 6.940e-12
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   16 LRQACSQEYPGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 168
            L + C +  PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS  V+
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPSAGVV 55
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BLAST of mRNA_F-serratus_M_contig6496.17451.1 vs. uniprot
Match: R1D6I6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D6I6_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 9.430e-12
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   16 LRQACSQEYPGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 168
            L + C +  PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS  V+
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPSAGVV 55
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6496.17451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E7F0G0_9STRA3.110e-1973.08Uncharacterized protein (Fragment) n=2 Tax=Fragila... [more]
A0A524MI88_9PROT3.980e-1771.15Uncharacterized protein n=1 Tax=Nitrosomonadales b... [more]
B8CEF4_THAPS2.300e-1672.00Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0S3C5_THAOC2.720e-1672.00Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K5UIC4_PHACS2.280e-1372.34Uncharacterized protein n=1 Tax=Phanerochaete carn... [more]
A0A1Y2ACV0_9TREE2.930e-1266.67Uncharacterized protein n=1 Tax=Naematelia encepha... [more]
A0A0E9NCQ7_SAICN3.290e-1278.57Uncharacterized protein n=1 Tax=Saitoella complica... [more]
R1EX34_EMIHU6.780e-1264.71Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1ESX1_EMIHU6.940e-1264.71Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1D6I6_EMIHU9.430e-1264.71Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6496contigF-serratus_M_contig6496:9837..10037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score72.0
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog5217.XP_007006354.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2E6PU@1,2SDCQ@2759,3ABW1@33154,3Q3AX@4751,3VC7G@5204
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Exons1
Model size203
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932000.6056943-CDS-F-serratus_M_contig6496:9836..100371622932000.6056943-CDS-F-serratus_M_contig6496:9836..10037Fucus serratus maleCDSF-serratus_M_contig6496 9837..10037 +
1690964096.2158113-CDS-F-serratus_M_contig6496:9836..100371690964096.2158113-CDS-F-serratus_M_contig6496:9836..10037Fucus serratus maleCDSF-serratus_M_contig6496 9837..10037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6496.17451.1prot_F-serratus_M_contig6496.17451.1Fucus serratus malepolypeptideF-serratus_M_contig6496 9837..10037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6496.17451.1

>prot_F-serratus_M_contig6496.17451.1 ID=prot_F-serratus_M_contig6496.17451.1|Name=mRNA_F-serratus_M_contig6496.17451.1|organism=Fucus serratus male|type=polypeptide|length=67bp
WCQQTLRQACSQEYPGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRH
PSLKVLQRYMVEGGRP*
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mRNA from alignment at F-serratus_M_contig6496:9837..10037+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6496.17451.1 ID=mRNA_F-serratus_M_contig6496.17451.1|Name=mRNA_F-serratus_M_contig6496.17451.1|organism=Fucus serratus male|type=mRNA|length=201bp|location=Sequence derived from alignment at F-serratus_M_contig6496:9837..10037+ (Fucus serratus male)
TGGTGTCAACAGACACTCCGACAAGCATGCTCCCAGGAATATCCCGGAAG
CGCAAGATGCGTTCAAAATTTTGATGATTCACTGGATTCTGCAAGTCGCA
AGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGCCAAGACAT
CCGTCGCTGAAAGTTTTACAACGTTATATGGTTGAGGGCGGCCGGCCGTA
G
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Coding sequence (CDS) from alignment at F-serratus_M_contig6496:9837..10037+

>mRNA_F-serratus_M_contig6496.17451.1 ID=mRNA_F-serratus_M_contig6496.17451.1|Name=mRNA_F-serratus_M_contig6496.17451.1|organism=Fucus serratus male|type=CDS|length=402bp|location=Sequence derived from alignment at F-serratus_M_contig6496:9837..10037+ (Fucus serratus male)
TGGTGTCAACAGACACTCCGACAAGCATGCTCCCAGGAATATCCCGGAAG
CGCAAGATGCGTTCAAAATTTTGATGATTCACTGGATTCTGCAAGTCGCA
AGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGCCAAGACAT
CCGTCGCTGAAAGTTTTACAACGTTATATGGTTGAGGGCGGCCGGCCGTA
GTGGTGTCAACAGACACTCCGACAAGCATGCTCCCAGGAATATCCCGGAA
GCGCAAGATGCGTTCAAAATTTTGATGATTCACTGGATTCTGCAAGTCGC
AAGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGCCAAGACA
TCCGTCGCTGAAAGTTTTACAACGTTATATGGTTGAGGGCGGCCGGCCGT
AG
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