mRNA_F-serratus_M_contig6491.17450.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6491.17450.1
Unique NamemRNA_F-serratus_M_contig6491.17450.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6491.17450.1 vs. uniprot
Match: A0A6H5K2N6_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N6_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 9.130e-32
Identity = 74/117 (63.25%), Postives = 89/117 (76.07%), Query Frame = 1 
Query:    1 LVYLEGRQGRLERESEENREKAESFQGLVQRLSEELERQGQAVNHHAKAIRQRESELEAALDRANRAHDELIAMEPPSLSQAIGGVEILLRVST------------QPAPSMAVAAG 315
            L +LEGRQG ++ ESEENR KAES++ LVQRLSEELERQG+ VN +A  + +RE +L+AALDRA RAHDELI+MEPPSLSQA+ GV+ILLRVST              AP+ AVAAG
Sbjct: 2377 LAFLEGRQGTMKSESEENRGKAESYESLVQRLSEELERQGEVVNRYASLLLEREEQLDAALDRAARAHDELISMEPPSLSQAVDGVKILLRVSTTAAAGEQSAVTGDDAPAAAVAAG 2493
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BLAST of mRNA_F-serratus_M_contig6491.17450.1 vs. uniprot
Match: D8LEJ5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ5_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.230e-26
Identity = 59/81 (72.84%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:    1 LVYLEGRQGRLERESEENREKAESFQGLVQRLSEELERQGQAVNHHAKAIRQRESELEAALDRANRAHDELIAMEPPSLSQ 243
            L +LEGRQG ++ ESEENR KAES++ LVQRLSEELERQG+AVN HA  + +RE +L+AALDRA RAHDELI+MEPPSLSQ
Sbjct: 2234 LAFLEGRQGAMKSESEENRGKAESYESLVQRLSEELERQGEAVNRHASLLLEREEQLDAALDRAARAHDELISMEPPSLSQ 2314
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6491.17450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2N6_9PHAE9.130e-3263.25GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LEJ5_ECTSI2.230e-2672.84GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6491contigF-serratus_M_contig6491:17678..18532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size415
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932000.536635-CDS-F-serratus_M_contig6491:17677..177551622932000.536635-CDS-F-serratus_M_contig6491:17677..17755Fucus serratus maleCDSF-serratus_M_contig6491 17678..17755 +
1690964096.1977308-CDS-F-serratus_M_contig6491:17677..177551690964096.1977308-CDS-F-serratus_M_contig6491:17677..17755Fucus serratus maleCDSF-serratus_M_contig6491 17678..17755 +
1622932000.5576737-CDS-F-serratus_M_contig6491:18197..185301622932000.5576737-CDS-F-serratus_M_contig6491:18197..18530Fucus serratus maleCDSF-serratus_M_contig6491 18198..18530 +
1690964096.20683-CDS-F-serratus_M_contig6491:18197..185301690964096.20683-CDS-F-serratus_M_contig6491:18197..18530Fucus serratus maleCDSF-serratus_M_contig6491 18198..18530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6491.17450.1prot_F-serratus_M_contig6491.17450.1Fucus serratus malepolypeptideF-serratus_M_contig6491 17678..18530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6491.17450.1

>prot_F-serratus_M_contig6491.17450.1 ID=prot_F-serratus_M_contig6491.17450.1|Name=mRNA_F-serratus_M_contig6491.17450.1|organism=Fucus serratus male|type=polypeptide|length=137bp
LVYLEGRQGRLERESEENREKAESFQGLVQRLSEELERQGQAVNHHAKAI
RQRESELEAALDRANRAHDELIAMEPPSLSQAIGGVEILLRVSTQPAPSM
AVAAGTGVVSTKEGMKAAEEKSGAIEEDAGDGGRGGQ
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mRNA from alignment at F-serratus_M_contig6491:17678..18532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6491.17450.1 ID=mRNA_F-serratus_M_contig6491.17450.1|Name=mRNA_F-serratus_M_contig6491.17450.1|organism=Fucus serratus male|type=mRNA|length=855bp|location=Sequence derived from alignment at F-serratus_M_contig6491:17678..18532+ (Fucus serratus male)
CTGGTGTATTTAGAGGGGAGGCAAGGGAGGCTCGAGCGCGAGTCCGAGGA
GAACCGCGAGAAGGCGGAAAGCTTCCAGGTCAGACCTTCCGGGCGTATGA
CGTACGGAGTTGGTTATTCCCTTTTGAGGGTTAGCAGCCTATTCCCGAGC
CGAACGGTAGTAACCGTCCCCATGTGTAAATTAAGGATTTGTTGAGGTTA
GTTTTTTATTTATTTTTATTACTGATACCCCTAGTACTTTTATATATCAT
GGACGTGTCGGTTAATATATCGATGTTGATGCTTTCGAAAGGCCCCCCCT
TTTTATTGCCAAAAATAATGTAGTGAAAGTGTTTTTATTTGTGTTTTGTT
TACTCTCCAATCACTCATGGGACTGTACAGCAACCTTGTGGCGGTGATAT
GACGCGTGTGACACTGCCGCGCAAAGCAGATCGCGTCTCTTTCGTCGTAC
CCCTCCCCGCGACCTCTGATTTCCAATTATGCTGTCGCAAATAAACCACG
CGGCTGACGGGGGAGCGCAGGGTCTCGTACAGCGACTAAGCGAAGAGCTG
GAGCGTCAGGGGCAGGCCGTAAACCACCACGCGAAGGCGATCCGCCAGAG
GGAATCCGAGCTCGAGGCCGCTCTCGACCGCGCGAACCGAGCGCATGACG
AACTGATTGCCATGGAGCCCCCGAGCCTGTCTCAGGCGATCGGCGGCGTG
GAGATTCTGCTGAGGGTTTCTACTCAGCCGGCGCCATCCATGGCAGTGGC
GGCGGGAACAGGCGTCGTCAGCACGAAGGAGGGCATGAAAGCTGCAGAGG
AAAAAAGTGGAGCCATCGAAGAAGACGCGGGGGATGGTGGCCGTGGCGGT
CAATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6491:17678..18532+

>mRNA_F-serratus_M_contig6491.17450.1 ID=mRNA_F-serratus_M_contig6491.17450.1|Name=mRNA_F-serratus_M_contig6491.17450.1|organism=Fucus serratus male|type=CDS|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig6491:17678..18532+ (Fucus serratus male)
CTGGTGTATTTAGAGGGGAGGCAAGGGAGGCTCGAGCGCGAGTCCGAGGA
GAACCGCGAGAAGGCGGAAAGCTTCCAGCTGGTGTATTTAGAGGGGAGGC
AAGGGAGGCTCGAGCGCGAGTCCGAGGAGAACCGCGAGAAGGCGGAAAGC
TTCCAGGGTCTCGTACAGCGACTAAGCGAAGAGCTGGAGCGTCAGGGGCA
GGCCGTAAACCACCACGCGAAGGCGATCCGCCAGAGGGAATCCGAGCTCG
AGGCCGCTCTCGACCGCGCGAACCGAGCGCATGACGAACTGATTGCCATG
GAGCCCCCGAGCCTGTCTCAGGCGATCGGCGGCGTGGAGATTCTGCTGAG
GGTTTCTACTCAGCCGGCGCCATCCATGGCAGTGGCGGCGGGAACAGGCG
TCGTCAGCACGAAGGAGGGCATGAAAGCTGCAGAGGAAAAAAGTGGAGCC
ATCGAAGAAGACGCGGGGGATGGTGGCCGTGGCGGTCAAGGTCTCGTACA
GCGACTAAGCGAAGAGCTGGAGCGTCAGGGGCAGGCCGTAAACCACCACG
CGAAGGCGATCCGCCAGAGGGAATCCGAGCTCGAGGCCGCTCTCGACCGC
GCGAACCGAGCGCATGACGAACTGATTGCCATGGAGCCCCCGAGCCTGTC
TCAGGCGATCGGCGGCGTGGAGATTCTGCTGAGGGTTTCTACTCAGCCGG
CGCCATCCATGGCAGTGGCGGCGGGAACAGGCGTCGTCAGCACGAAGGAG
GGCATGAAAGCTGCAGAGGAAAAAAGTGGAGCCATCGAAGAAGACGCGGG
GGATGGTGGCCGTGGCGGTCAA
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