mRNA_F-serratus_M_contig649.17449.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig649.17449.1
Unique NamemRNA_F-serratus_M_contig649.17449.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig649.17449.1 vs. uniprot
Match: D8LQA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA5_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 1.080e-36
Identity = 82/152 (53.95%), Postives = 102/152 (67.11%), Query Frame = 3 
Query:  186 NSPDSMDEVRQRLISSPEYGKMVNRLAGKNPFGDEGAAGVPEEEAENPRTLRLFWSTVRFAVDVGIVLFGVVLCVNSGKLPENVLAPFDSAATAIKGSPIEQVLEALPWERAFVLRSTAEVLVALVLSPLADRLIVSPAIQLWVQIRSRSLS 641
            NSP+ +DEVRQRL++S  Y +MV R+ G +PF + G  G  +E  E+P  L +   TVR  VDV I L  VVL V   KLP  +L    SAAT IKGSP+E VLEALPWE A VL+  A+  VA++LSP+ DRL+VSPAI  WVQ + RSLS
Sbjct:    6 NSPEDIDEVRQRLMASSNYNEMVGRIEGNSPFLEAGDKGSAKEGEESP-ILPVLRQTVRVVVDVAITLVPVVLVVTYAKLPPPLLEALGSAATTIKGSPLEPVLEALPWEPAVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLS 156
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BLAST of mRNA_F-serratus_M_contig649.17449.1 vs. uniprot
Match: A0A6H5L3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3V4_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 6.940e-36
Identity = 88/176 (50.00%), Postives = 110/176 (62.50%), Query Frame = 3 
Query:  120 HATTAFDRTAAR--PTRVS*GVPQNSPDSMDEVRQRLISSPEYGKMVNRLAGKNPFGDEGAAGVPEEEAENPRTLRLFWSTVRFAVDVGIVLFGVVLCVNSGKLPENVLAPFDSAATAIKGSPIEQVLEALPWERAFVLRSTAEVLVALVLSPLADRLIVSPAIQLWVQIRSRSLS 641
            HA  A  R A    P R       NSP+ +DEVRQRL++S +Y +MV R+ G +PF + G  G  +E  E+P  L +   TVR  VDV + L  VVL V   KLP  +L    SAATAIKGSP+E VLEALPWE   VL+  A+  VA++LSP+ DRL+VSPAI  WVQ + RSLS
Sbjct:   34 HAEHALCRQARHQGPPRHLMSTAGNSPEDIDEVRQRLMASSKYDEMVGRIEGNSPFLEAGDKGSAKEGEESP-ILPVLRQTVRVVVDVAVGLVPVVLVVTYAKLPPPLLEALGSAATAIKGSPLEPVLEALPWEPVVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLS 208
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig649.17449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQA5_ECTSI1.080e-3653.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3V4_9PHAE6.940e-3650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig649contigF-serratus_M_contig649:412788..417993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_005530.1
Exons3
Model size1637
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig649.17449.1prot_F-serratus_M_contig649.17449.1Fucus serratus malepolypeptideF-serratus_M_contig649 413778..414506 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932000.4018798-UTR-F-serratus_M_contig649:412787..4137771622932000.4018798-UTR-F-serratus_M_contig649:412787..413777Fucus serratus maleUTRF-serratus_M_contig649 412788..413777 -
1690964096.1419575-UTR-F-serratus_M_contig649:412787..4137771690964096.1419575-UTR-F-serratus_M_contig649:412787..413777Fucus serratus maleUTRF-serratus_M_contig649 412788..413777 -
1622932000.4474-UTR-F-serratus_M_contig649:414506..4145851622932000.4474-UTR-F-serratus_M_contig649:414506..414585Fucus serratus maleUTRF-serratus_M_contig649 414507..414585 -
1690964096.179333-UTR-F-serratus_M_contig649:414506..4145851690964096.179333-UTR-F-serratus_M_contig649:414506..414585Fucus serratus maleUTRF-serratus_M_contig649 414507..414585 -
1622932000.4733703-UTR-F-serratus_M_contig649:417872..4179931622932000.4733703-UTR-F-serratus_M_contig649:417872..417993Fucus serratus maleUTRF-serratus_M_contig649 417873..417993 -
1690964096.1885595-UTR-F-serratus_M_contig649:417872..4179931690964096.1885595-UTR-F-serratus_M_contig649:417872..417993Fucus serratus maleUTRF-serratus_M_contig649 417873..417993 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932000.4164326-CDS-F-serratus_M_contig649:413777..4139331622932000.4164326-CDS-F-serratus_M_contig649:413777..413933Fucus serratus maleCDSF-serratus_M_contig649 413778..413933 -
1690964096.1533499-CDS-F-serratus_M_contig649:413777..4139331690964096.1533499-CDS-F-serratus_M_contig649:413777..413933Fucus serratus maleCDSF-serratus_M_contig649 413778..413933 -
1622932000.4315636-CDS-F-serratus_M_contig649:414215..4145061622932000.4315636-CDS-F-serratus_M_contig649:414215..414506Fucus serratus maleCDSF-serratus_M_contig649 414216..414506 -
1690964096.1678283-CDS-F-serratus_M_contig649:414215..4145061690964096.1678283-CDS-F-serratus_M_contig649:414215..414506Fucus serratus maleCDSF-serratus_M_contig649 414216..414506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig649.17449.1

>prot_F-serratus_M_contig649.17449.1 ID=prot_F-serratus_M_contig649.17449.1|Name=mRNA_F-serratus_M_contig649.17449.1|organism=Fucus serratus male|type=polypeptide|length=149bp
MDEVRQRLISSPEYGKMVNRLAGKNPFGDEGAAGVPEEEAENPRTLRLFW
STVRFAVDVGIVLFGVVLCVNSGKLPENVLAPFDSAATAIKGSPIEQVLE
ALPWERAFVLRSTAEVLVALVLSPLADRLIVSPAIQLWVQIRSRSLSP*
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mRNA from alignment at F-serratus_M_contig649:412788..417993-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig649.17449.1 ID=mRNA_F-serratus_M_contig649.17449.1|Name=mRNA_F-serratus_M_contig649.17449.1|organism=Fucus serratus male|type=mRNA|length=5206bp|location=Sequence derived from alignment at F-serratus_M_contig649:412788..417993- (Fucus serratus male)
GTACAACTACATATGAAATGGTCGACGATGTCTTCTTCGCGATGCTCGTG
CTCCTCTTTGGCGCTCGTTGGGCTCGACGGTTTCGTGGTCATACCTGTAC
CGCGTACAGTCGGCGTAAGCAGTGAGTTACGCATCGAAATATCTCGTCTC
ATTGAGATCATACACAGCAGTAAGCAGAGCACATGCGGAAAATATTTAGG
TACGAAATACAACATTGTACTGGAACTACTGCTGGTAGATGGAAGACAAA
GGAGGAGGTTTCAGAAGCTGACTTTCGGCTTCTCTCCGAGCATGGGCCTC
ACAAGCAGTGCAGTAAGCCTCGACAGCATTCCAAACGAGGTGGTGATGTA
TCCCATGTTGCGATCTTACAATTTATGTTTGAGTAGTGGTGAGGCATCGA
CCTTACGGCTGTCGGGGGTCGAATCTCTGAGTACCTACAGCAGTTATTTT
GCATGAACATTCAAGGGTACTTTAGTTTTTAGCATGTGAAAAAATCTGAA
CAGTCGCGAAGGCGGACGATCGAAACCGTATCTTTTTCTTTCAAGCCATG
TGCTGCATTTGAAAATAGTATCCATGGCATCGGGGTGTTGTACAACAGTG
TTTTTGAATATGATTTGTATGCCTGGTCGTCCTCTTTGCGATGGATTTAC
CACAAATATTGTATTAATAGTACTAATTATTCTTATTTACTTCCCCTTTC
ACAAAATGTTTCGTAAATTGATTGATTGATTGATTGAATTTTCATATAAT
AAGCTGATGTCAAAAATCAAGCCTGGTGGTCACAAAGGAGGAAAACACCA
TTCGGAAGGAAAGAACGTACGACGTACTCTGCCTTACAAAGAGAAAGCGG
AAATGGTACAACATACCAACCTCGTAACCTTCTGACACGTTGGGACGTGA
GTTCGAATCCCGGTAACTGGGGTTTTTTCTCACTTAAAAAATAAAAATAA
AATGCCCAACATGTAGTGGAGAACGATTAACGGGGCCCCACGTTTTTTTT
TCCAAAAAAAGTCCAAGTGCAAGAGTATCGTCGGTACTGAAATGGAGGAA
TACGGGATGTTTTGCCTCAAAGTACAATTTCGGTATCAGCAATATGAGGT
ATGAGCAACCAACTGTCCCTACCGCCACATGTTCCAAACGTAAGAGGGTA
TAGTCATGTGTCTTTGTTCAGTAGGAAGTTTTGGGCTTCGAAGGTCATGT
ACGCGAGGTTCGGCGGGCGACTTTTCGGTGTTTTTTTTCTGTGCTCCTAC
TACGGCTGCAGTAGCAGCAGCAGTAGGAACAGCAGTAGGTTCTCCGCTCT
TGAGCCTGACATCGCCCCCGAGACCGCGGTTTTGCGCAGAAGGCCTCCTA
AAACCCTGCTGGAGCACCCTCTGAAGAGGACAACCTTCTACATGCCACTT
AGCCGAAGAAAGTTGTCTACATGTGTGTAGTCACCTTCTGTGGCATTTGC
GGTGGGATTATTCCCGGGTTTACACAAAACCACCAAAACGTCGGCCGCCG
AACCTCGGTACATGACCTTCGAAGCCCAAAACTTCCTACTGAACAAAGAC
ACATGACTATGCACTCTTACGTTTGGAACAAGTGGCGGCAGGGGCAGCTG
GTTGCTCATACCTCATATTGCTGATACCAAAATTGTACTTTGAGGCAAAA
CACGCCCGTATTCACTCCATTACAGTACCGACGATACTCTTGCACTTGGA
TTTTTTATTTTGAAAAAAACGCGTGGGGCCCCGTTAAGGCTCTAAATCGT
TACCTGGTAGTACACAAAATCCGACCTCACCATCAACGAGGGAATGGAAT
GGCTGAACCGCAGAATGAAGGTGGATGAGAAATCCTGTGTGACCTTCCTC
CTCTGTGACCCCGGATCCAACGAACTTGACGTACCAGGTACTAAGATTTG
CGACATCCTGTGAGGCCCTGAATTTGTTGAGTCAATTTATACTGAATGCC
CAGACTCATGGTGTTCCTTGTTTATGTTTTGGTTTCTCTGCAAGGTGATC
TAAATGTATACCTGGTACCAGTATATAGTATAACGGTGGGTTTCTCCCCG
ATACGTAAAGTAACAGTAAATTGGCCCGTAACAGTAAATAGGCCGTGTAC
AAGATGCCTTAAAAATATCATATTAGTGCGTACCTGGTATAGTCTATGTA
GTACAGTGCTCTCTAAACAGCAGTGATCGTTCGCATCATTGAGAGAGAAA
GCCTCTTATCCAGGGGGTGTCGTTTTGATTCATTTCTCGGGAAGGGTACG
GCCTCCGATACTTTCAACATGCTCACTACTTCATACCAATAGTGGGTGTG
GGAAAGAGAGGCGCACGGTCGCCCCGGTGGTTCAGTTGGTAATAGTAACC
TCGAAACCTTCTGGCGTTGGGACATGAGTTCGAATCTCGATGTCGTCACA
CGAACTGAGATTTTTCCTCACAAGCAAAAATAAAAGAAGAAAATAAAAAG
AAATGCCCAAAAAGTGGAGAGCGATCAATCCGTTAGTACACAAAGCTCGA
CTTCACGGTCGACGAGGGAAAAGAAGGGCTGAATCCTTATCGCGAAAAAA
ATTAAGCCAAGCACCGCAGAAGGAAGGTGGAGAAATCCCGTGTGACCTTC
CTCCTGTGACCCTGGCTGGTACGTCCACAAGCCTGACGTCCAGAATAAAT
GGGATGACAGCACACACATACACATCAATTGGTCCATGGTGATGGAAAGG
CAGCACCCGTTACTAGAACTACCTTGAGGACTACTGGCCTCGTGTCGGCG
GACTCTCGGCAGTGAACGCCATCGGTACGCAACTACCTGACCCGATAAAC
TCCGGAGTGACCCGATGGCGTATGGCGGTGTAAATAAATAAATTGACGCC
GCCACGGAAATCGGGAGGAATCCCGTGAGCAAGCACCAAATTCAGCCTGA
GTATGGAGAATGGACAGACTGACGCGGGACGGGACGTCCGAACCCGTCTC
GCGGGACCAAATTCTCAGGCACGAACGCGGAAAGGGGAATATTCATTTTT
CCTGTTCAGCCGACCACGAGCAGGATTGGCAACCTTACCCGGTTGATCCG
TACTCTGCTTTATGTAATGACCCTACATACATCCATACATACACACCTGT
GCTACCCATATACGTTTTATAAAAATAAAAACTCTGGAGCGTTTCGTCTT
GGGGTACACCCGTATCTGAGCAACCTTGCGCTCTAGCAGTTTCACTCAAA
ACCATCGAAGTGACCACTGAGCCGGAAATTGTTGGAGATCGAAAGCATCA
TCAGCCCATAGCACGGATTCCCAAAATTCGGTTGCGTCGTCCCCATCAGC
ACTGGAAAACATTTCTACTTCGGTATAACGTCGGTACGGTGCACACCTAC
TGTCGACCCCTGGACCATAACTTACACACGCAAATCCCCTTGCTTGTCTC
GATGGCAGCGCAACAACCGCGTTCGACCGTACCGCGGCGAGGCCCACCAG
GGTTTCGTAAGGCGTCCCCCAAAATTCTCCAGATTCCATGGACGAGGTAC
GCCAGCGTCTAATATCGTCGCCAGAGTACGGCAAGATGGTCAACCGCTTA
GCCGGAAAAAATCCCTTCGGGGACGAAGGCGCCGCTGGGGTGCCCGAGGA
AGAAGCGGAGAACCCCAGGACGTTGCGGCTGTTTTGGTCGACCGTGCGAT
TCGCGGTGGACGTGGGGATCGTCCTGTTTGGGGTGGTGCTGTGTGTTAAC
TCTGGGAAGCTGCCGGAAAACGTCCTCGCGCCTTTTGATTCAGCAGCGAC
TGCCATTAAGGGGTCGCCGATTGAGCAGGTGGGTCACTTGTTAGGTGGCT
CATCGGAAAAACAGTGGGGTGGGTGGAACTGACCAAGTCTGGTATCGCAA
CAGAATTCCCTTGTGCTTGTCCAGAGCATGGTCCACTGGCGTGGTCGGCC
TTTGCTGAGCACGCTGTTTGACGAAGATAAACGAGTCGGATCTTGGCACC
CACGGGGTCTCTTGACCTCTTGACAGGGCGCAGTCGACATGCGTGTGCCC
AAACATGGTTACGGGTACTGAACAATTTGCTTCCCCTATCCGTTTTCCAC
AACGTCCCAGGTGCTGGAGGCGTTGCCTTGGGAGAGGGCATTTGTACTGA
GGTCTACGGCAGAGGTGCTGGTGGCGTTAGTTTTGTCCCCTTTAGCGGAT
CGTTTGATTGTCTCCCCTGCGATACAGCTTTGGGTGCAAATCCGTTCAAG
ATCTCTTTCTCCCTAGAGAACGTTGCGACATTTTGGGTCTTTTGCGCACC
CCCTCACCGATGTTGTTTAATGCTTCACTGTTTCATGGCTTGATCACATC
GCGGGAGCACCGAAATCGTTTATGTTCTCGTCGAGAGTTGCCATCAGGGG
AGGCAATACGCCGTGTATCGATTTGTGTGGGTAGGCGTGCTAAGCTAGTT
GGACTGTCAGCTTCTTCAAGCGTTGTCGAGGCATGATCGAGGCGTACGAC
CGGTAGGGAGTTATGGTTTTTCGCTGAAACGTCTCCTCGTCGGCAAGGGT
GCCCCCCGAGCTAACCCCAACGTTGCACTTGAAAGGACGCTCTCGAGCTG
CCGCTTGTGTCGCGTTTTTCACACGCAAAGATCCGGTCGGTCACCCCCTC
AACTAGAAATGATTTGTTTACGTTGATGAGACGGTTTCACGGTGACAGCC
CTTTAGGATTCTGCGCATTGGTGTGCGGGAATGGAAATAAATGTACATGA
AAATAATTTCTCTAGATGATTGAACACCTCCACCGTCTCCATGCTGGTAC
CATAAGGTAAGGTGTCAAATATTTACAGCGTTCCTTTCTCCGGTTTCGTT
TCACCTGTTCTCGTACCTGTAGAAGAATGTGATATTATTGTAGATGAAGG
AGGGTCCCTGGGTTCAAGCTACATCTCTATGATGGTGGAGGCATGCAAGT
TTCGGTTGTGTCCAGCAGTTAAATAATTTTGATGTCGACCCAGTCCTGGC
AGGTCTATCTGTAGTTGGAGGCATAAATGTTTCGATTGTTTGCAGCGACT
AAATCATTTTGAAGTCGATCCAGTTCTGACCGTAGCTTTGCGTGCTCATT
CTGCGGAAGACATCGACGACGTATTTGAGAGAAAGCAACGGCGGAGGGAT
GTATGTATGTAATGTCATCACATATAGCAGAGTATGGATGAACCGGGTAG
GGTTGCCAATCCTGCTCGTGGTCAGCTGAACAGGGAACATTAGACATTTA
CCTGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig649:412788..417993-

>mRNA_F-serratus_M_contig649.17449.1 ID=mRNA_F-serratus_M_contig649.17449.1|Name=mRNA_F-serratus_M_contig649.17449.1|organism=Fucus serratus male|type=CDS|length=894bp|location=Sequence derived from alignment at F-serratus_M_contig649:412788..417993- (Fucus serratus male)
ATGGACGAGGTACGCCAGCGTCTAATATCGTCGCCAGAGTACGGCAAGAT
GGTCAACCGCTTAGCCGGAAAAAATCCCTTCGGGGACGAAGGCGCCGCTG
GGGTGCCCGAGGAAGAAGCGGAGAACCCCAGGACGTTGCGGCTGTTTTGG
TCGACCGTGCGATTCGCGGTGGACGTGGGGATCGTCCTGTTTGGGGTGGT
GCTGTGTGTTAACTCTGGGAAGCTGCCGGAAAACGTCCTCGCGCCTTTTG
ATTCAGCAGCGACTGCCATTAAGGGGTCGCCGATTGAGCAGATGGACGAG
GTACGCCAGCGTCTAATATCGTCGCCAGAGTACGGCAAGATGGTCAACCG
CTTAGCCGGAAAAAATCCCTTCGGGGACGAAGGCGCCGCTGGGGTGCCCG
AGGAAGAAGCGGAGAACCCCAGGACGTTGCGGCTGTTTTGGTCGACCGTG
CGATTCGCGGTGGACGTGGGGATCGTCCTGTTTGGGGTGGTGCTGTGTGT
TAACTCTGGGAAGCTGCCGGAAAACGTCCTCGCGCCTTTTGATTCAGCAG
CGACTGCCATTAAGGGGTCGCCGATTGAGCAGGTGCTGGAGGCGTTGCCT
TGGGAGAGGGCATTTGTACTGAGGTCTACGGCAGAGGTGCTGGTGGCGTT
AGTTTTGTCCCCTTTAGCGGATCGTTTGATTGTCTCCCCTGCGATACAGC
TTTGGGTGCAAATCCGTTCAAGATCTCTTTCTCCCTAGGTGCTGGAGGCG
TTGCCTTGGGAGAGGGCATTTGTACTGAGGTCTACGGCAGAGGTGCTGGT
GGCGTTAGTTTTGTCCCCTTTAGCGGATCGTTTGATTGTCTCCCCTGCGA
TACAGCTTTGGGTGCAAATCCGTTCAAGATCTCTTTCTCCCTAG
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