mRNA_F-serratus_M_contig649.17447.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig649.17447.1
Unique NamemRNA_F-serratus_M_contig649.17447.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig649.17447.1 vs. uniprot
Match: D8LQA7_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA7_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 2.020e-5
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 3 
Query:  369 EPAGTATAADSAASTTKSTDLVVEIKPATFPDLRAVSRLLVEEFYGGGLWFPAQ 530
            + AG + + D+     K    +VEIKPA F +LRAVSRLLV EFYG  +W+PAQ
Sbjct:   77 QAAGESASVDTDVRDLKEKAPLVEIKPAKFHNLRAVSRLLVAEFYGSTIWYPAQ 130
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig649.17447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQA7_ECTSI2.020e-551.85N-acetyltransferase domain-containing protein n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig649contigF-serratus_M_contig649:381694..382223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size530
Cds size393
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932000.247944-UTR-F-serratus_M_contig649:381693..3818301622932000.247944-UTR-F-serratus_M_contig649:381693..381830Fucus serratus maleUTRF-serratus_M_contig649 381694..381830 +
1690964096.0753918-UTR-F-serratus_M_contig649:381693..3818301690964096.0753918-UTR-F-serratus_M_contig649:381693..381830Fucus serratus maleUTRF-serratus_M_contig649 381694..381830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932000.2653313-CDS-F-serratus_M_contig649:381830..3822231622932000.2653313-CDS-F-serratus_M_contig649:381830..382223Fucus serratus maleCDSF-serratus_M_contig649 381831..382223 +
1690964096.086803-CDS-F-serratus_M_contig649:381830..3822231690964096.086803-CDS-F-serratus_M_contig649:381830..382223Fucus serratus maleCDSF-serratus_M_contig649 381831..382223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig649.17447.1prot_F-serratus_M_contig649.17447.1Fucus serratus malepolypeptideF-serratus_M_contig649 381831..382223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig649.17447.1

>prot_F-serratus_M_contig649.17447.1 ID=prot_F-serratus_M_contig649.17447.1|Name=mRNA_F-serratus_M_contig649.17447.1|organism=Fucus serratus male|type=polypeptide|length=131bp
MPRSLPRQLLWCLCLVAICGANVSGFAENCALLTLSSRTAAGAQSYRRSY
MSSVRRSKHLLWRRRGRDADIILPALHEPAGTATAADSAASTTKSTDLVV
EIKPATFPDLRAVSRLLVEEFYGGGLWFPAQ
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mRNA from alignment at F-serratus_M_contig649:381694..382223+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig649.17447.1 ID=mRNA_F-serratus_M_contig649.17447.1|Name=mRNA_F-serratus_M_contig649.17447.1|organism=Fucus serratus male|type=mRNA|length=530bp|location=Sequence derived from alignment at F-serratus_M_contig649:381694..382223+ (Fucus serratus male)
AATATACGTAAGCAATATGCACCTACTGTGCAGCACTTGAAGCTGGTTCG
GGGAAGGCCACACCCGCCGTTCTCGTCGATAGTCACTATTCTCGTAGAAT
AAGGTACCTCGGTGCTGCTGGTGGTATAAGAGCAACGATGCCGCGGTCGC
TCCCACGACAACTACTGTGGTGTCTGTGCCTAGTAGCGATCTGCGGGGCA
AATGTCAGCGGTTTCGCGGAGAACTGCGCCCTTTTGACCCTCTCGTCGAG
GACAGCAGCTGGTGCCCAGAGTTATCGGCGGTCATACATGAGCAGTGTTA
GACGTTCTAAGCATCTGTTGTGGCGTAGACGAGGCCGCGATGCCGATATC
ATACTGCCTGCCTTGCACGAGCCAGCGGGGACGGCGACGGCGGCAGACTC
CGCTGCTTCAACCACGAAAAGCACCGACCTTGTCGTGGAAATCAAGCCCG
CAACGTTCCCCGACCTCCGAGCCGTGTCAAGGCTTCTAGTAGAGGAGTTC
TACGGTGGTGGTCTGTGGTTCCCGGCGCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig649:381694..382223+

>mRNA_F-serratus_M_contig649.17447.1 ID=mRNA_F-serratus_M_contig649.17447.1|Name=mRNA_F-serratus_M_contig649.17447.1|organism=Fucus serratus male|type=CDS|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig649:381694..382223+ (Fucus serratus male)
ATGCCGCGGTCGCTCCCACGACAACTACTGTGGTGTCTGTGCCTAGTAGC
GATCTGCGGGGCAAATGTCAGCGGTTTCGCGGAGAACTGCGCCCTTTTGA
CCCTCTCGTCGAGGACAGCAGCTGGTGCCCAGAGTTATCGGCGGTCATAC
ATGAGCAGTGTTAGACGTTCTAAGCATCTGTTGTGGCGTAGACGAGGCCG
CGATGCCGATATCATACTGCCTGCCTTGCACGAGCCAGCGGGGACGGCGA
CGGCGGCAGACTCCGCTGCTTCAACCACGAAAAGCACCGACCTTGTCGTG
GAAATCAAGCCCGCAACGTTCCCCGACCTCCGAGCCGTGTCAAGGCTTCT
AGTAGAGGAGTTCTACGGTGGTGGTCTGTGGTTCCCGGCGCAGATGCCGC
GGTCGCTCCCACGACAACTACTGTGGTGTCTGTGCCTAGTAGCGATCTGC
GGGGCAAATGTCAGCGGTTTCGCGGAGAACTGCGCCCTTTTGACCCTCTC
GTCGAGGACAGCAGCTGGTGCCCAGAGTTATCGGCGGTCATACATGAGCA
GTGTTAGACGTTCTAAGCATCTGTTGTGGCGTAGACGAGGCCGCGATGCC
GATATCATACTGCCTGCCTTGCACGAGCCAGCGGGGACGGCGACGGCGGC
AGACTCCGCTGCTTCAACCACGAAAAGCACCGACCTTGTCGTGGAAATCA
AGCCCGCAACGTTCCCCGACCTCCGAGCCGTGTCAAGGCTTCTAGTAGAG
GAGTTCTACGGTGGTGGTCTGTGGTTCCCGGCGCAG
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