mRNA_F-serratus_M_contig649.17434.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig649.17434.1
Unique NamemRNA_F-serratus_M_contig649.17434.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig649.17434.1 vs. uniprot
Match: A0A0P1ACE6_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACE6_PLAHL)

HSP 1 Score: 52.0 bits (123), Expect = 1.540e-5
Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 1 
Query:   34 WESDSGATFHMSHTRAGMSNYKKASPGTSIEVADGNTLPVDGFGRIEVDLDQPGRTTKMVRMDDVAYVPGLSRNLVSTVKAVE 282
            W  DSG T H++H     S    AS G SI V   N +P++G G+IE+++     T +M+ + DV Y P L  +L+S   AV+
Sbjct:  229 WTIDSGCTRHVTHESQWFSTIS-ASNG-SITVGVKNQIPIEGIGKIELEVTDSKGTQRMLTLHDVLYAPELKFSLLSVPAAVK 309
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BLAST of mRNA_F-serratus_M_contig649.17434.1 vs. uniprot
Match: A0A6A3YSJ5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YSJ5_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.670e-5
Identity = 27/76 (35.53%), Postives = 41/76 (53.95%), Query Frame = 1 
Query:   34 WESDSGATFHMSHTRAGMSNYKKASPGTSIEVADGNTLPVDGFGRIEVDLDQPGRTTKMVRMDDVAYVPGLSRNLV 261
            W  DSG T H++H     SN   +  G SI V   N +P++G GR+E+++    R  K + + DV Y P L  +L+
Sbjct:  129 WTIDSGCTRHVTHEAQWFSNISAS--GGSITVGGKNQIPIEGIGRVELEVIDSKRNMKKLILHDVLYAPQLHFSLL 202
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BLAST of mRNA_F-serratus_M_contig649.17434.1 vs. uniprot
Match: A0A4C1TCT1_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1TCT1_EUMVA)

HSP 1 Score: 51.6 bits (122), Expect = 2.190e-5
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   31 EWESDSGATFHMSHTRAGMSNYKKASPGTSIEVADGNTLPVDGFGRIEVDLDQPGRTTKM-VRMDDVAYVPGLSRNLVSTVKA 276
            +W  D+GAT H++ TR     Y+  +   SI+ A    L  +G G IE  L +  +  ++ +R++DV YVPG+SRNL S + A
Sbjct:  295 DWWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEF-LSRINQNLEIQIRLEDVWYVPGISRNLFSVLAA 376
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BLAST of mRNA_F-serratus_M_contig649.17434.1 vs. uniprot
Match: A0A4C1SBF3_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SBF3_EUMVA)

HSP 1 Score: 51.6 bits (122), Expect = 2.340e-5
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   31 EWESDSGATFHMSHTRAGMSNYKKASPGTSIEVADGNTLPVDGFGRIEVDLDQPGRTTKM-VRMDDVAYVPGLSRNLVSTVKA 276
            +W  D+GAT H++ TR     Y+  +   SI+ A    L  +G G IE  L +  +  ++ +R++DV YVPG+SRNL S + A
Sbjct:  268 DWWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEF-LSRINQNLEIQIRLEDVWYVPGISRNLFSVLAA 349
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BLAST of mRNA_F-serratus_M_contig649.17434.1 vs. uniprot
Match: A0A6A4DDX6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4DDX6_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 6.640e-5
Identity = 30/84 (35.71%), Postives = 46/84 (54.76%), Query Frame = 1 
Query:   34 WESDSGATFHMSHTRAGMSNYKKASPGTSIEVADGNTLPVDGFGRIEVD-LDQPGRTTKMVRMDDVAYVPGLSRNLVSTVKAVE 282
            W  DSG T H++H     SN   +  G SI V   N +P++G GR+E++ +D  G   K++ +  V Y P L  +L+S   AV+
Sbjct:  138 WTIDSGCTRHVTHEAQWFSNISAS--GGSITVGGKNQIPIEGIGRVELEVIDYKGNMKKLI-LHGVLYAPQLHFSLLSLSAAVK 218
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BLAST of mRNA_F-serratus_M_contig649.17434.1 vs. uniprot
Match: A0A225UU99_9STRA (Pol Polyprotein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UU99_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.630e-5
Identity = 27/83 (32.53%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:   34 WESDSGATFHMSHTRAGMSNYKKASPGTSIEVADGNTLPVDGFGRIEVDLDQPGRTTKMVRMDDVAYVPGLSRNLVSTVKAVE 282
            W  DSG T H+SH     ++   +  G SI V   N +P++G GR+E+++     T + + +  V Y P L  +L+S   AV+
Sbjct:  205 WTIDSGCTRHVSHESQWFTDITTS--GGSITVGGNNQIPIEGIGRVELEVSDSKGTMQKLILHGVLYAPQLQFSLLSVPAAVK 285
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig649.17434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A0P1ACE6_PLAHL1.540e-537.35Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A6A3YSJ5_9STRA1.670e-535.53Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A4C1TCT1_EUMVA2.190e-537.35Retrovirus-related Pol polyprotein from transposon... [more]
A0A4C1SBF3_EUMVA2.340e-537.35Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A4DDX6_9STRA6.640e-535.71Uncharacterized protein n=2 Tax=Phytophthora rubi ... [more]
A0A225UU99_9STRA7.630e-532.53Pol Polyprotein (Fragment) n=1 Tax=Phytophthora me... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig649contigF-serratus_M_contig649:50237..50542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931998.4340792-CDS-F-serratus_M_contig649:50236..505421622931998.4340792-CDS-F-serratus_M_contig649:50236..50542Fucus serratus maleCDSF-serratus_M_contig649 50237..50542 -
1690964095.2985322-CDS-F-serratus_M_contig649:50236..505421690964095.2985322-CDS-F-serratus_M_contig649:50236..50542Fucus serratus maleCDSF-serratus_M_contig649 50237..50542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig649.17434.1prot_F-serratus_M_contig649.17434.1Fucus serratus malepolypeptideF-serratus_M_contig649 50237..50542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig649.17434.1

>prot_F-serratus_M_contig649.17434.1 ID=prot_F-serratus_M_contig649.17434.1|Name=mRNA_F-serratus_M_contig649.17434.1|organism=Fucus serratus male|type=polypeptide|length=102bp
MGTARSDEKEEWESDSGATFHMSHTRAGMSNYKKASPGTSIEVADGNTLP
VDGFGRIEVDLDQPGRTTKMVRMDDVAYVPGLSRNLVSTVKAVEQWGKRL
IY
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mRNA from alignment at F-serratus_M_contig649:50237..50542-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig649.17434.1 ID=mRNA_F-serratus_M_contig649.17434.1|Name=mRNA_F-serratus_M_contig649.17434.1|organism=Fucus serratus male|type=mRNA|length=306bp|location=Sequence derived from alignment at F-serratus_M_contig649:50237..50542- (Fucus serratus male)
ATGGGGACCGCCCGCAGTGATGAAAAGGAAGAATGGGAATCAGACTCCGG
CGCCACGTTTCACATGTCTCACACCCGCGCCGGAATGTCTAACTATAAGA
AGGCTTCACCAGGGACGAGCATTGAGGTTGCCGACGGAAATACCCTACCG
GTGGACGGCTTCGGCAGAATTGAAGTGGATTTGGACCAACCAGGACGTAC
TACAAAGATGGTAAGGATGGACGATGTCGCGTACGTACCTGGACTCTCTC
GAAACCTGGTGTCTACCGTTAAGGCTGTGGAGCAATGGGGAAAACGGCTA
ATTTAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig649:50237..50542-

>mRNA_F-serratus_M_contig649.17434.1 ID=mRNA_F-serratus_M_contig649.17434.1|Name=mRNA_F-serratus_M_contig649.17434.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig649:50237..50542- (Fucus serratus male)
ATGGGGACCGCCCGCAGTGATGAAAAGGAAGAATGGGAATCAGACTCCGG
CGCCACGTTTCACATGTCTCACACCCGCGCCGGAATGTCTAACTATAAGA
AGGCTTCACCAGGGACGAGCATTGAGGTTGCCGACGGAAATACCCTACCG
GTGGACGGCTTCGGCAGAATTGAAGTGGATTTGGACCAACCAGGACGTAC
TACAAAGATGGTAAGGATGGACGATGTCGCGTACGTACCTGGACTCTCTC
GAAACCTGGTGTCTACCGTTAAGGCTGTGGAGCAATGGGGAAAACGGCTA
ATTTATATGGGGACCGCCCGCAGTGATGAAAAGGAAGAATGGGAATCAGA
CTCCGGCGCCACGTTTCACATGTCTCACACCCGCGCCGGAATGTCTAACT
ATAAGAAGGCTTCACCAGGGACGAGCATTGAGGTTGCCGACGGAAATACC
CTACCGGTGGACGGCTTCGGCAGAATTGAAGTGGATTTGGACCAACCAGG
ACGTACTACAAAGATGGTAAGGATGGACGATGTCGCGTACGTACCTGGAC
TCTCTCGAAACCTGGTGTCTACCGTTAAGGCTGTGGAGCAATGGGGAAAA
CGGCTAATTTAT
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