mRNA_F-serratus_M_contig649.17435.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig649.17435.1
Unique NamemRNA_F-serratus_M_contig649.17435.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig649.17435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig649contigF-serratus_M_contig649:64894..68481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size3146
Cds size1743
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig649.17435.1prot_F-serratus_M_contig649.17435.1Fucus serratus malepolypeptideF-serratus_M_contig649 66230..68404 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931998.0507872-UTR-F-serratus_M_contig649:64893..650051622931998.0507872-UTR-F-serratus_M_contig649:64893..65005Fucus serratus maleUTRF-serratus_M_contig649 64894..65005 -
1690964095.1139138-UTR-F-serratus_M_contig649:64893..650051690964095.1139138-UTR-F-serratus_M_contig649:64893..65005Fucus serratus maleUTRF-serratus_M_contig649 64894..65005 -
1622931998.0825999-UTR-F-serratus_M_contig649:65015..662291622931998.0825999-UTR-F-serratus_M_contig649:65015..66229Fucus serratus maleUTRF-serratus_M_contig649 65016..66229 -
1690964095.1345935-UTR-F-serratus_M_contig649:65015..662291690964095.1345935-UTR-F-serratus_M_contig649:65015..66229Fucus serratus maleUTRF-serratus_M_contig649 65016..66229 -
1622931998.1898005-UTR-F-serratus_M_contig649:68404..684811622931998.1898005-UTR-F-serratus_M_contig649:68404..68481Fucus serratus maleUTRF-serratus_M_contig649 68405..68481 -
1690964095.1891162-UTR-F-serratus_M_contig649:68404..684811690964095.1891162-UTR-F-serratus_M_contig649:68404..68481Fucus serratus maleUTRF-serratus_M_contig649 68405..68481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931998.097735-CDS-F-serratus_M_contig649:66229..675371622931998.097735-CDS-F-serratus_M_contig649:66229..67537Fucus serratus maleCDSF-serratus_M_contig649 66230..67537 -
1690964095.1460273-CDS-F-serratus_M_contig649:66229..675371690964095.1460273-CDS-F-serratus_M_contig649:66229..67537Fucus serratus maleCDSF-serratus_M_contig649 66230..67537 -
1622931998.1229577-CDS-F-serratus_M_contig649:67696..679091622931998.1229577-CDS-F-serratus_M_contig649:67696..67909Fucus serratus maleCDSF-serratus_M_contig649 67697..67909 -
1690964095.1564832-CDS-F-serratus_M_contig649:67696..679091690964095.1564832-CDS-F-serratus_M_contig649:67696..67909Fucus serratus maleCDSF-serratus_M_contig649 67697..67909 -
1622931998.1714797-CDS-F-serratus_M_contig649:68182..684041622931998.1714797-CDS-F-serratus_M_contig649:68182..68404Fucus serratus maleCDSF-serratus_M_contig649 68183..68404 -
1690964095.1796703-CDS-F-serratus_M_contig649:68182..684041690964095.1796703-CDS-F-serratus_M_contig649:68182..68404Fucus serratus maleCDSF-serratus_M_contig649 68183..68404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig649.17435.1

>prot_F-serratus_M_contig649.17435.1 ID=prot_F-serratus_M_contig649.17435.1|Name=mRNA_F-serratus_M_contig649.17435.1|organism=Fucus serratus male|type=polypeptide|length=581bp
MVNAPRSSDLSKPDDLLLDRTKPVVNVAAFEADKGAVAPVVGEAITARDK
DSAGLTQVVPFDSLTPTPMSGPAVVVSGKAASKTTVATKESAPENVVTSM
PRAANEGRKTSATPLPLKDISSRVAEDPAPSGRALRDVISDIALETTSRG
STTLSTEWSTPLPAVSTIATTLNDIDVLGLRETTEFKYHPLGVALDETMP
KMPPLTQMHSAATGSCTTDDGLTEGPEVPLKPQTAAMSPSKVVDDVETGF
LKYLTGERRTGASVEHTMEISVAGAVAADDELRAGVQESKGNTESEMEED
SAGAVIDNAARLAKTPDHVVKEEKPPFLSKGGLKSLSAPPRMNWPMRRTS
SERPTRKGMEETKPLRAGSLTAVGGGKNDAGHDSAGAGDTRVLRHRLSLD
RPAMKRIDECIMAKALESQAAQEESNGNGSESAPVANIALSRRSEAVAAG
SALPASSQPEGASTEARVQANILGAMGSEGTPRVVSVVGEKEQEGTIAES
KLDETSGAAQAAPVSTIENTAQVDVGAQQPALVSARPVRRGIARAQSVPL
EALSGDDPYATFSEDDELVTVCSKESCVIC*
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mRNA from alignment at F-serratus_M_contig649:64894..68481-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig649.17435.1 ID=mRNA_F-serratus_M_contig649.17435.1|Name=mRNA_F-serratus_M_contig649.17435.1|organism=Fucus serratus male|type=mRNA|length=3588bp|location=Sequence derived from alignment at F-serratus_M_contig649:64894..68481- (Fucus serratus male)
CGGACGGCATAGAGTCTACCGTCGGCGTGACGGCAACCGAGCAAGCACTG
GACGCTGTGACGACGAAAGGGTGGGTAATGGTAAATGCCCCTCGCTCAAG
CGATTTATCGAAGCCCGATGACCTGTTACTTGATAGGACCAAGCCCGTGG
TCAACGTCGCAGCATTTGAGGCGGATAAAGGGGCGGTGGCGCCCGTGGTC
GGGGAGGCGATCACTGCAAGAGACAAGGATAGCGCTGGTCTCACCCAGGT
GGTACCATTTGATTCGCTCACGCCCACTCCGATGTCGGGGCCTGCGGTGA
CAAAGGATTCGTCTGCGACGTATGTTTGTAGGCCGGTGGAGGCCGTGGAT
GAAGACATTGCCGAAGGTAAGCAATCGTCCCCTTACTACGTCAAGGCAAT
TGGATGGTAGGAAGACGGAAAGCCTTTAATTGTTTGCCTCGGTCAAAGTG
CTCTCTTTTGTCTTTTTGCCCCCTCTGAAGGGAATGTTTTCCTCTTGCAA
ATGCGGGCTGTGAATCGTTTCACTGCTGATGGGTTCAATTTTGCCGCAAT
TATGGCAGACAAAAAACCGGTGGTGGTAAGTGGCAAAGCGGCATCAAAGA
CCACGGTCGCTACCAAAGAGTCGGCTCCGGAGAACGTGGTCACATCGATG
CCTAGGGCGGCGAACGAAGGTCGCAAGACGAGCGCAACGCCTCTGCCGTT
GAAAGATATTTCTTCGCGTGTGGCGGAAGATCCCGCGCCTTCGGGCAGGG
CCCTTAGAGATGTCATCTCGGACATCGCACTCGAGGTATGGTGGCTTTGA
AGTTTATGTCCTCTTGATAATAAAGATTTCACACGGTCATTTTTGTTTTG
GTGCTCTCGATTGAAATTACGTTGCCACTTTATCGGCCAAAGAGTAACAC
GACGTCCGGATTCAATTTGACCCTCCTTGCGCCTAATTTCGCAGACCACC
TCGAGGGGTTCGACGACGCTGTCGACGGAGTGGTCTACTCCCCTCCCGGC
GGTCAGCACCATCGCTACCACGCTCAACGATATTGACGTCCTTGGCCTAC
GGGAAACAACCGAGTTCAAGTACCATCCCCTCGGCGTGGCGCTGGATGAA
ACGATGCCCAAGATGCCACCCCTTACCCAGATGCATTCCGCAGCGACTGG
ATCATGTACGACGGACGATGGCCTGACGGAGGGACCCGAGGTTCCACTCA
AACCTCAGACAGCGGCGATGTCACCCAGTAAAGTGGTAGACGACGTCGAG
ACGGGTTTTCTCAAGTATTTAACCGGCGAAAGGCGGACTGGTGCCAGCGT
GGAACATACGATGGAGATATCGGTAGCAGGTGCGGTGGCAGCTGATGATG
AGCTGCGTGCGGGGGTTCAGGAATCCAAAGGCAACACGGAAAGCGAGATG
GAGGAAGACAGTGCTGGCGCTGTCATCGACAATGCTGCACGGCTTGCAAA
AACGCCTGATCATGTCGTGAAGGAGGAAAAGCCGCCGTTTTTGTCTAAGG
GTGGCCTTAAGTCCCTGAGTGCACCACCACGCATGAATTGGCCGATGCGC
AGGACTAGTTCCGAACGGCCAACAAGAAAAGGAATGGAAGAAACAAAACC
GCTGAGGGCTGGATCGCTGACAGCGGTCGGAGGGGGCAAGAATGATGCGG
GTCACGATTCGGCAGGCGCAGGAGACACTAGGGTACTAAGGCACCGCCTC
AGTCTTGACCGGCCGGCGATGAAACGCATTGATGAATGCATAATGGCAAA
GGCTTTGGAGTCGCAGGCCGCACAAGAAGAGTCCAATGGTAACGGGAGCG
AGAGCGCGCCAGTCGCAAATATCGCGCTTAGTCGAAGAAGCGAAGCCGTT
GCTGCGGGGAGCGCATTACCAGCATCGTCCCAGCCGGAGGGCGCATCGAC
CGAGGCCCGCGTTCAGGCAAACATTTTGGGGGCGATGGGATCGGAAGGCA
CCCCCAGAGTTGTTTCGGTAGTGGGCGAAAAAGAGCAAGAGGGAACAATC
GCGGAGTCGAAGCTGGATGAAACAAGTGGCGCTGCTCAGGCGGCACCTGT
TTCAACGATCGAGAACACCGCTCAGGTGGACGTTGGTGCACAACAACCCG
CACTTGTCAGCGCCAGACCTGTTAGAAGGGGCATCGCGCGTGCTCAGTCG
GTTCCATTGGAAGCCCTTTCTGGGGATGATCCCTACGCGACGTTCTCGGA
AGACGACGAGCTCGTGACCGTCTGCAGCAAGGAATCTTGCGTTATTTGCT
GAGGCGTTTGCCTGACTTCTCTTCCTTATATATACGGTGTATATGCGTTA
GTCTATTATCGATAGGATTGGAACTTTTGGAGGAAGAACGCCTTCCTACT
CTTAAAATCCGTCTACCAGCTGCCAGCAAGCATGTAGTGTTTGGGAGCAG
TTTCTATTTTTTTACGACAATTAGAAGGTAATACTGTACACGAACTGAAG
TCGAGGAGGATTATTAAAAGCCTTCTGAGCACAGATTTTTAACCGCTTTT
CATTTTTGATATTTTCTACGGTGCCCCTTGTCTAGTGATGGTCGAGGAAA
ACCCCACGTTGAATATTCCTACTGAGCTGTAGGCGTTCATACTACTATAC
TGTGCCAACAGGTGCAGTGCGCATTGCACTATAATAGCTATCGCTTTCCA
AACATGTTGTGGTGAAATTTCATGGCGGGCCCATGCCACAAACTAGGCAC
GGAGAGCATTCTGCCGTTTTTTGCTCACACCTGTACCTTGCCTGACTGAC
TGCTGGACTATTTTAGGGTTCAAACGGTCTGTTACGATTCTACCTCGCTC
CTCTCAATTGGCCGTGCTTCAGAAACCGCTGCGGAGTTGGATGCATTGCC
TTCCCTTATTCCCCGATGTGACGGGCCTTGATATTCGTGTTTTTGTGTGT
GTTTTTTAATGTGTGTAGCGGAGGGGGGAGTTACCACGTCCGTGTTGTTG
TGTGCAACAGGGGTGGTTGCGTGTGTGCAGAAATCATGAGCGATCGATCG
CTGATTCCACAAGATAAGCGGTCTCTGGAAGCTTTCAGTCGCGCTATCGC
GGTTGATAGGGGTGCAGCTAAAAGTGTTTTAGCCTGACTGCTCTCAATTG
GAGCTAACGACCATGATTGCTAGATGAGGCTCTCAATTCGTTCTAGCGAG
TAGTAAAATAGGTCGATACATACTTTGGCGGGGAGCTGTTTCAATCCATT
TACTAACTGTAGTGACAGCTATTGAACTATTCTTCATTGTGTAGTCCGCT
GATGTGACATGTGACAATCCTTGGATCAGGGCCTCTCATCAAAGCCTCTT
TCTCGGTGGATGGTGGATAGCTCGGCGAAAAAAAAAAAGCGAAGATCTGA
TTCGACGCTACAAAGTGTTTCTTCAAGGCGTTCCTCGTTCTAATCCAAAG
CCATATTTTTTCCTAAATGAAAGCCGTGTTATGTACTCTATGTAGCTTGT
ATGTATGTACGTGTAGGTATGTGTAGATATGTGTAGATATGTATGTCCAT
GTCACGACGGAGTGTGCTTTCTCCCTAATTATTCTGGACGTCAAGTTCGT
TAGATATACCAGCCGGGGTCACACAGGAGGAACGTCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig649:64894..68481-

>mRNA_F-serratus_M_contig649.17435.1 ID=mRNA_F-serratus_M_contig649.17435.1|Name=mRNA_F-serratus_M_contig649.17435.1|organism=Fucus serratus male|type=CDS|length=3486bp|location=Sequence derived from alignment at F-serratus_M_contig649:64894..68481- (Fucus serratus male)
ATGGTAAATGCCCCTCGCTCAAGCGATTTATCGAAGCCCGATGACCTGTT
ACTTGATAGGACCAAGCCCGTGGTCAACGTCGCAGCATTTGAGGCGGATA
AAGGGGCGGTGGCGCCCGTGGTCGGGGAGGCGATCACTGCAAGAGACAAG
GATAGCGCTGGTCTCACCCAGGTGGTACCATTTGATTCGCTCACGCCCAC
TCCGATGTCGGGGCCTGCGGTGATGGTAAATGCCCCTCGCTCAAGCGATT
TATCGAAGCCCGATGACCTGTTACTTGATAGGACCAAGCCCGTGGTCAAC
GTCGCAGCATTTGAGGCGGATAAAGGGGCGGTGGCGCCCGTGGTCGGGGA
GGCGATCACTGCAAGAGACAAGGATAGCGCTGGTCTCACCCAGGTGGTAC
CATTTGATTCGCTCACGCCCACTCCGATGTCGGGGCCTGCGGTGGTGGTA
AGTGGCAAAGCGGCATCAAAGACCACGGTCGCTACCAAAGAGTCGGCTCC
GGAGAACGTGGTCACATCGATGCCTAGGGCGGCGAACGAAGGTCGCAAGA
CGAGCGCAACGCCTCTGCCGTTGAAAGATATTTCTTCGCGTGTGGCGGAA
GATCCCGCGCCTTCGGGCAGGGCCCTTAGAGATGTCATCTCGGACATCGC
ACTCGAGGTGGTAAGTGGCAAAGCGGCATCAAAGACCACGGTCGCTACCA
AAGAGTCGGCTCCGGAGAACGTGGTCACATCGATGCCTAGGGCGGCGAAC
GAAGGTCGCAAGACGAGCGCAACGCCTCTGCCGTTGAAAGATATTTCTTC
GCGTGTGGCGGAAGATCCCGCGCCTTCGGGCAGGGCCCTTAGAGATGTCA
TCTCGGACATCGCACTCGAGACCACCTCGAGGGGTTCGACGACGCTGTCG
ACGGAGTGGTCTACTCCCCTCCCGGCGGTCAGCACCATCGCTACCACGCT
CAACGATATTGACGTCCTTGGCCTACGGGAAACAACCGAGTTCAAGTACC
ATCCCCTCGGCGTGGCGCTGGATGAAACGATGCCCAAGATGCCACCCCTT
ACCCAGATGCATTCCGCAGCGACTGGATCATGTACGACGGACGATGGCCT
GACGGAGGGACCCGAGGTTCCACTCAAACCTCAGACAGCGGCGATGTCAC
CCAGTAAAGTGGTAGACGACGTCGAGACGGGTTTTCTCAAGTATTTAACC
GGCGAAAGGCGGACTGGTGCCAGCGTGGAACATACGATGGAGATATCGGT
AGCAGGTGCGGTGGCAGCTGATGATGAGCTGCGTGCGGGGGTTCAGGAAT
CCAAAGGCAACACGGAAAGCGAGATGGAGGAAGACAGTGCTGGCGCTGTC
ATCGACAATGCTGCACGGCTTGCAAAAACGCCTGATCATGTCGTGAAGGA
GGAAAAGCCGCCGTTTTTGTCTAAGGGTGGCCTTAAGTCCCTGAGTGCAC
CACCACGCATGAATTGGCCGATGCGCAGGACTAGTTCCGAACGGCCAACA
AGAAAAGGAATGGAAGAAACAAAACCGCTGAGGGCTGGATCGCTGACAGC
GGTCGGAGGGGGCAAGAATGATGCGGGTCACGATTCGGCAGGCGCAGGAG
ACACTAGGGTACTAAGGCACCGCCTCAGTCTTGACCGGCCGGCGATGAAA
CGCATTGATGAATGCATAATGGCAAAGGCTTTGGAGTCGCAGGCCGCACA
AGAAGAGTCCAATGGTAACGGGAGCGAGAGCGCGCCAGTCGCAAATATCG
CGCTTAGTCGAAGAAGCGAAGCCGTTGCTGCGGGGAGCGCATTACCAGCA
TCGTCCCAGCCGGAGGGCGCATCGACCGAGGCCCGCGTTCAGGCAAACAT
TTTGGGGGCGATGGGATCGGAAGGCACCCCCAGAGTTGTTTCGGTAGTGG
GCGAAAAAGAGCAAGAGGGAACAATCGCGGAGTCGAAGCTGGATGAAACA
AGTGGCGCTGCTCAGGCGGCACCTGTTTCAACGATCGAGAACACCGCTCA
GGTGGACGTTGGTGCACAACAACCCGCACTTGTCAGCGCCAGACCTGTTA
GAAGGGGCATCGCGCGTGCTCAGTCGGTTCCATTGGAAGCCCTTTCTGGG
GATGATCCCTACGCGACGTTCTCGGAAGACGACGAGCTCGTGACCGTCTG
CAGCAAGGAATCTTGCGTTATTTGCTGAACCACCTCGAGGGGTTCGACGA
CGCTGTCGACGGAGTGGTCTACTCCCCTCCCGGCGGTCAGCACCATCGCT
ACCACGCTCAACGATATTGACGTCCTTGGCCTACGGGAAACAACCGAGTT
CAAGTACCATCCCCTCGGCGTGGCGCTGGATGAAACGATGCCCAAGATGC
CACCCCTTACCCAGATGCATTCCGCAGCGACTGGATCATGTACGACGGAC
GATGGCCTGACGGAGGGACCCGAGGTTCCACTCAAACCTCAGACAGCGGC
GATGTCACCCAGTAAAGTGGTAGACGACGTCGAGACGGGTTTTCTCAAGT
ATTTAACCGGCGAAAGGCGGACTGGTGCCAGCGTGGAACATACGATGGAG
ATATCGGTAGCAGGTGCGGTGGCAGCTGATGATGAGCTGCGTGCGGGGGT
TCAGGAATCCAAAGGCAACACGGAAAGCGAGATGGAGGAAGACAGTGCTG
GCGCTGTCATCGACAATGCTGCACGGCTTGCAAAAACGCCTGATCATGTC
GTGAAGGAGGAAAAGCCGCCGTTTTTGTCTAAGGGTGGCCTTAAGTCCCT
GAGTGCACCACCACGCATGAATTGGCCGATGCGCAGGACTAGTTCCGAAC
GGCCAACAAGAAAAGGAATGGAAGAAACAAAACCGCTGAGGGCTGGATCG
CTGACAGCGGTCGGAGGGGGCAAGAATGATGCGGGTCACGATTCGGCAGG
CGCAGGAGACACTAGGGTACTAAGGCACCGCCTCAGTCTTGACCGGCCGG
CGATGAAACGCATTGATGAATGCATAATGGCAAAGGCTTTGGAGTCGCAG
GCCGCACAAGAAGAGTCCAATGGTAACGGGAGCGAGAGCGCGCCAGTCGC
AAATATCGCGCTTAGTCGAAGAAGCGAAGCCGTTGCTGCGGGGAGCGCAT
TACCAGCATCGTCCCAGCCGGAGGGCGCATCGACCGAGGCCCGCGTTCAG
GCAAACATTTTGGGGGCGATGGGATCGGAAGGCACCCCCAGAGTTGTTTC
GGTAGTGGGCGAAAAAGAGCAAGAGGGAACAATCGCGGAGTCGAAGCTGG
ATGAAACAAGTGGCGCTGCTCAGGCGGCACCTGTTTCAACGATCGAGAAC
ACCGCTCAGGTGGACGTTGGTGCACAACAACCCGCACTTGTCAGCGCCAG
ACCTGTTAGAAGGGGCATCGCGCGTGCTCAGTCGGTTCCATTGGAAGCCC
TTTCTGGGGATGATCCCTACGCGACGTTCTCGGAAGACGACGAGCTCGTG
ACCGTCTGCAGCAAGGAATCTTGCGTTATTTGCTGA
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