mRNA_F-serratus_M_contig648.17426.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6A3VCN8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VCN8_9STRA) HSP 1 Score: 166 bits (421), Expect = 3.050e-46 Identity = 98/226 (43.36%), Postives = 137/226 (60.62%), Query Frame = 1
Query: 16 EMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 687
E +V ++VDD+L ++ KA + A + +KF++KDMG A + + I + + R L Q Y ES+IK+F + K P GV L+KADEPQ+ E+K +MK PYR VG+LM+ A TRPDI+ AV ++RF ENPG H A +K+ +YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LML + W S Q+ ++EAEY
Sbjct: 47 ECIVRLYVDDMLIASRQKAVIASEKAGIAEKFRIKDMGRARFILSIEIDYDIERRTLGISQKAYTESIIKKFGQENTKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEY 270
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA) HSP 1 Score: 167 bits (422), Expect = 7.070e-46 Identity = 98/227 (43.17%), Postives = 140/227 (61.67%), Query Frame = 1
Query: 16 EMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAKKEAK---IPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 687
E +V ++VDD+L ++ KA + A + +KF++KD+G A + +G I + + R L Q Y ES+IK+F ++ AK P GV L+KADEPQ+ E+K +MK PYR VG+LM+ A TRPDI+ AV ++RF ENPG H A +K+ +YLL TKD GI Y G G +EAY+D+++ D RRSVSG +LML + W S Q+ ++EAEY
Sbjct: 102 ECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKF-GQENAKPWLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEY 325
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.490e-45 Identity = 98/226 (43.36%), Postives = 138/226 (61.06%), Query Frame = 1
Query: 16 EMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 687
E +V ++VDD+L ++ KA + A + +KF++KDMG A + +G I + + R L Q Y ES+IK+F + K P GV L+KADEPQ+ E+K +MK PYR VG+LM+ + TRPDI+ AV ++RF ENPG H A +K+ +YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LML + W S Q+ ++EAEY
Sbjct: 328 ECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEY 551
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA) HSP 1 Score: 169 bits (428), Expect = 2.020e-45 Identity = 97/226 (42.92%), Postives = 137/226 (60.62%), Query Frame = 1
Query: 16 EMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 687
E +V ++VD++L ++ KA + A + +KF++KD+G A + +G I N + R L Q Y ES+IK F + K P GV L+KADEPQ+ E+K +MK PYR VG+LM+ A TRPD++ AV ++RF ENPG H + +K +YLL TKD GI Y GQ G +EAY+D+D+ D RRSVSG +LML + W S Q+ ++EAEY
Sbjct: 296 ECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQ-LGTHLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEY 519
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA) HSP 1 Score: 171 bits (432), Expect = 3.390e-45 Identity = 98/226 (43.36%), Postives = 139/226 (61.50%), Query Frame = 1
Query: 16 EMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 687
E +V ++VDD+L ++ A + A + +KF++KDMG A + +G I + + R L Q Y ES+IK+F + K P GV L+KADEPQ+ E+K +MK+ PYR VG+LM+ A TRPDI+ AV ++RF ENPG H A +K+ +YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LML + + W S Q+ ++EAEY
Sbjct: 594 ECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEY 817
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA) HSP 1 Score: 168 bits (425), Expect = 3.640e-45 Identity = 98/226 (43.36%), Postives = 137/226 (60.62%), Query Frame = 1
Query: 16 EMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 687
E +V ++VDD+L ++ KA + A + +KF++KD+G A + +G I + + R L Q Y ES+IK+F + K P GV L+KADEPQ+ E+K +MK PYR VG+LM+ A TRPDI+ AV ++RF ENPG H A +K+ +YLL TKD GI Y G G EAY+D+D+ D RRSVSG +LML + W S Q+ ++EAEY
Sbjct: 263 ECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEY 486
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA) HSP 1 Score: 169 bits (428), Expect = 1.130e-44 Identity = 98/226 (43.36%), Postives = 137/226 (60.62%), Query Frame = 1
Query: 16 EMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 687
E +V ++VDD+L ++ KA + A + +KF++KDMG A + +G I N + R L Q Y ES+IK+ + K P GV L+KADEPQ+ E+K +MK PYR VG+LM+ + TRPDI+ AV ++RF ENPG H A +K+ +YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LML + W S Q+ ++EAEY
Sbjct: 572 ECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEY 795
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA) HSP 1 Score: 160 bits (404), Expect = 2.720e-44 Identity = 93/216 (43.06%), Postives = 129/216 (59.72%), Query Frame = 1
Query: 46 ILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 687
+L ++ KA + A + +KF++KDMG A + +G I + + R L Y ES+IK+F + K P GV L+KADEPQ+ E+K +MK PYR VG+LM+ A TRPDI+ AV ++RF ENPG H A +K+ +YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LML + W S Q+ ++EAEY
Sbjct: 1 MLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISHKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEY 214
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6A3GUH8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GUH8_9STRA) HSP 1 Score: 164 bits (416), Expect = 5.930e-44 Identity = 96/226 (42.48%), Postives = 136/226 (60.18%), Query Frame = 1
Query: 16 EMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 687
E +V ++VDD+L ++ KA + A + +KF+ KD+G A + +G I + + R L Q Y ES+IK+F + K P GV +KADEPQ+ E+K +MK PYR VG+LM+ A TRP+I+ AV ++RF ENPG H A +K+ +YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LML + W S Q+ ++EAEY
Sbjct: 249 ECIVCLYVDDMLIASRQKAAIASVKAGIAEKFRRKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QFTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPEISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWADNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEY 472
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6A3GCN4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GCN4_9STRA) HSP 1 Score: 159 bits (402), Expect = 7.590e-44 Identity = 97/226 (42.92%), Postives = 133/226 (58.85%), Query Frame = 1
Query: 16 EMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 687
E +V ++VDD+L + A + +KF++KDMG A + +G I + + R L Q Y ES+IK+F + K P GV L+KADEPQ+ E+K +MK PYR VG+LM+ A TRPDI+ AV ++RF ENPG H A +K+ YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LML + W S Q+ ++EAEY
Sbjct: 47 ECIVCLYVDDMLIAS--------VKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPYLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVHYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEY 262 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig648.17426.1 >prot_F-serratus_M_contig648.17426.1 ID=prot_F-serratus_M_contig648.17426.1|Name=mRNA_F-serratus_M_contig648.17426.1|organism=Fucus serratus male|type=polypeptide|length=223bp MVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNback to top mRNA from alignment at F-serratus_M_contig648:398813..399499- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig648.17426.1 ID=mRNA_F-serratus_M_contig648.17426.1|Name=mRNA_F-serratus_M_contig648.17426.1|organism=Fucus serratus male|type=mRNA|length=687bp|location=Sequence derived from alignment at F-serratus_M_contig648:398813..399499- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig648:398813..399499- >mRNA_F-serratus_M_contig648.17426.1 ID=mRNA_F-serratus_M_contig648.17426.1|Name=mRNA_F-serratus_M_contig648.17426.1|organism=Fucus serratus male|type=CDS|length=1338bp|location=Sequence derived from alignment at F-serratus_M_contig648:398813..399499- (Fucus serratus male)back to top |