mRNA_F-serratus_M_contig648.17424.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig648.17424.1
Unique NamemRNA_F-serratus_M_contig648.17424.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig648.17424.1 vs. uniprot
Match: A0A6H5JX23_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX23_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.940e-26
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:   94 EESDYTPRHTPVGKKFQAAIPELLSYEGRKTRSPE---TGAQMVWRSIRDWDPQSRGMLAEYLCAAKEVVEAKQKRSGVAVHVRLGGR 348
            EESD+ PR T VG  +QA IP+LL  E RK  +P    TGA+MVWRSIRDWDP SRGML+ YL AAK+ V+AKQ R GV VHVRLGG+
Sbjct:  490 EESDFPPRRTLVGNGYQADIPDLLPAEERKAAAPTSAGTGAKMVWRSIRDWDPHSRGMLSSYLEAAKKAVQAKQSRPGVVVHVRLGGK 577
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BLAST of mRNA_F-serratus_M_contig648.17424.1 vs. uniprot
Match: D7G9E3_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E3_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 5.840e-25
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:   94 EESDYTPRHTPVGKKFQAAIPELLSYEGRKTRSPE---TGAQMVWRSIRDWDPQSRGMLAEYLCAAKEVVEAKQKRSGVAVHVRLGG 345
            EESDY P+ T VG  +QA IP+LL    R+  +P    TGA+MVWRSIRDWDP SRGML+ YL AAK+ V+AKQ R GVA+HVRLGG
Sbjct:  288 EESDYPPQRTLVGDGYQADIPDLLPAGERQAAAPTAAGTGAKMVWRSIRDWDPHSRGMLSSYLEAAKKAVQAKQSRPGVAIHVRLGG 374
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BLAST of mRNA_F-serratus_M_contig648.17424.1 vs. uniprot
Match: D8LCW2_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW2_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 3.320e-21
Identity = 53/87 (60.92%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:   94 EESDYTPRHTPVGKKFQAAIPELLSYEGRKTRSPE----TGAQMVWRSIRDWDPQSRGMLAEYLCAAKEVVEAKQKRSGVAVHVRLG 342
            E SD  P+   VG  +QA IP+LLS E RK  +      TGA+MVWRSIR WDPQSR ML+ YL AAK+VV+AKQ   GVAVHVRLG
Sbjct:  418 ENSDCAPQQILVGDDYQADIPDLLSAEERKKEAGHPAAGTGAKMVWRSIRKWDPQSRHMLSTYLHAAKDVVKAKQASPGVAVHVRLG 504
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BLAST of mRNA_F-serratus_M_contig648.17424.1 vs. uniprot
Match: A0A6H5JLS8_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS8_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.210e-20
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:   94 EESDYTPRHTPVGKKFQAAIPELLSYEGRKTRS----PETGAQMVWRSIRDWDPQSRGMLAEYLCAAKEVVEAKQKRSGVAVHVRLG 342
            ++ D  P+   VG  +QA IP+LLS E RK  +      TGA+MVWRSIR+WDPQSR ML+ YL AAK+VV+AKQ   GVAVHVRLG
Sbjct:  495 DKPDCDPQQILVGDDYQADIPDLLSAEDRKKEAGHPAARTGAKMVWRSIRNWDPQSRHMLSTYLHAAKDVVKAKQASPGVAVHVRLG 581
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BLAST of mRNA_F-serratus_M_contig648.17424.1 vs. uniprot
Match: D8LCW0_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW0_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.640e-20
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:   94 EESDYTPRHTPVGKKFQAAIPELLSYEGRKTRSPE----TGAQMVWRSIRDWDPQSRGMLAEYLCAAKEVVEAKQKRSGVAVHVRLG 342
            E+SD  P+   VG  +QA IP+LLS E RK  +      TGA+MVWRSIR+WDPQSR ML+ YL AAK+V++ KQ   GVAVHVRLG
Sbjct:  338 EKSDCDPQQILVGDDYQADIPDLLSAEERKEEAGHPAAGTGAKMVWRSIRNWDPQSRQMLSTYLHAAKDVLQKKQASPGVAVHVRLG 424
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BLAST of mRNA_F-serratus_M_contig648.17424.1 vs. uniprot
Match: A0A6H5K0T4_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T4_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.720e-20
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:  112 PRHTPVGKKFQAAIPELLSYEGRKT-----RSPETGAQMVWRSIRDWDPQSRGMLAEYLCAAKEVVEAKQKRSGVAVHVRLGGR 348
            PR T VG+  Q  IP+LL  E R       R+  TGA+MVW+S+RDWDP SRGMLA YL AA  +V +KQ R GVA+HVRLGG+
Sbjct:  486 PRRTLVGEDHQVDIPDLLPAEDRSKAAAAGRAEGTGAEMVWQSVRDWDPHSRGMLAGYLQAANTMVRSKQARPGVAIHVRLGGK 569
[Close]
BLAST of mRNA_F-serratus_M_contig648.17424.1 vs. uniprot
Match: A0A6H5KVI2_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 5.040e-19
Identity = 50/89 (56.18%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:   94 EESDYTPRHTPVGKKFQAAIPELLSYEGRKTRSPE----TGAQMVWRSIRDWDPQSRGMLAEYLCAAKEVVEAKQKRSGVAVHVRLGGR 348
            ++SD  PR   VG  +QA IP LLS + RK  +      TGA+MVWRSIR+WDPQSR ML+ YL AA +V++ KQ   GVAVHVRLG R
Sbjct:  493 DKSDCDPRQILVGDDYQADIPALLSAQERKKEAGHPAAGTGAKMVWRSIRNWDPQSRQMLSTYLHAATDVLQKKQGFPGVAVHVRLGDR 581
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig648.17424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JX23_9PHAE1.940e-2664.77BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G9E3_ECTSI5.840e-2563.22ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LCW2_ECTSI3.320e-2160.92ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JLS8_9PHAE1.210e-2058.62ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LCW0_ECTSI1.640e-2058.62ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K0T4_9PHAE5.720e-2057.14BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KVI2_9PHAE5.040e-1956.18ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig648contigF-serratus_M_contig648:227428..228523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size379
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931997.080028-CDS-F-serratus_M_contig648:227427..2276401622931997.080028-CDS-F-serratus_M_contig648:227427..227640Fucus serratus maleCDSF-serratus_M_contig648 227428..227640 +
1690964094.6988847-CDS-F-serratus_M_contig648:227427..2276401690964094.6988847-CDS-F-serratus_M_contig648:227427..227640Fucus serratus maleCDSF-serratus_M_contig648 227428..227640 +
1622931997.1028502-CDS-F-serratus_M_contig648:228358..2285231622931997.1028502-CDS-F-serratus_M_contig648:228358..228523Fucus serratus maleCDSF-serratus_M_contig648 228359..228523 +
1690964094.7145858-CDS-F-serratus_M_contig648:228358..2285231690964094.7145858-CDS-F-serratus_M_contig648:228358..228523Fucus serratus maleCDSF-serratus_M_contig648 228359..228523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig648.17424.1prot_F-serratus_M_contig648.17424.1Fucus serratus malepolypeptideF-serratus_M_contig648 227428..228523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig648.17424.1

>prot_F-serratus_M_contig648.17424.1 ID=prot_F-serratus_M_contig648.17424.1|Name=mRNA_F-serratus_M_contig648.17424.1|organism=Fucus serratus male|type=polypeptide|length=126bp
PVVPKKKRRKYTTTSTNIYAKTYLAKKNSKEEESDYTPRHTPVGKKFQAA
IPELLSYEGRKTRSPETGAQMVWRSIRDWDPQSRGMLAEYLCAAKEVVEA
KQKRSGVAVHVRLGGRCGGVGQEDGP
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mRNA from alignment at F-serratus_M_contig648:227428..228523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig648.17424.1 ID=mRNA_F-serratus_M_contig648.17424.1|Name=mRNA_F-serratus_M_contig648.17424.1|organism=Fucus serratus male|type=mRNA|length=1096bp|location=Sequence derived from alignment at F-serratus_M_contig648:227428..228523+ (Fucus serratus male)
CCTGTAGTTCCCAAGAAAAAGAGGAGAAAATATACGACCACTTCTACGAA
TATATATGCTAAAACATATTTGGCCAAAAAGAACTCAAAGGAAGAAGAAT
CCGACTATACTCCGAGGCACACGCCCGTGGGCAAGAAGTTCCAAGCGGCC
ATTCCTGAGCTTCTGTCATATGAAGGAAGAAAAACACGATCTCCAGAAAC
CGGCGCTCAAATGGTAAGTGCTGACCTTAACTCTTTAGGTGCCGGTAAAT
GGTATTGCACCCAAGATTGGTTTCTGCTTGTCGTTACGAGGGGTCTCCTG
GCTAACCAATCACGTGATCCACGAATATAGTTCAGATTGATGTCAACTTT
GTAACGACGATACGCCCTGTGCTTGGAGCCTATGGGAAAGTAATTCACGC
GATGTGAAAGAGGTAACCGTTAGCCCTTTAGCTTGGCCGTTGGCTTGCAT
TCACCACAAGGTTGTATGGCTCGGTCACCCTTTCTCAGTTATGTGCTACG
TCGGAAAGGCTCGGTCACTCGGGGGTGATGATTCGGTCATGGCGAGAGGG
TCTCAGGTGGCAAGTTGTATCCCGAGGCCGCACCAAAGTTTTCAATTCGT
GTCCAAACGCTGTGCAAATTGGTTTTCACTGCTTCGTCTGCTCAATGTGA
CCATACAGTTTCTGCATCGAGTTTCCCCCTTCCAAAATAACCACTACCAC
TGTTTTGATATTCGTAGATTACTCGGATCCCACATCTGGTACCCAACTCT
TCTTTCAACCACTGACTTGCTAGCTCTGGGTAGGCTAGTCGGGGGAATGC
ATGCAGCGTGGGGATTGGAAAACTTCGCGCGTTCTCACAGAGGAAAAATG
AAATCATGTACAGCAGCATTCACATCCCGCAATTCGTGCGCATGCATTTT
TTGGGTGACTCTGAAATACCATTGAGTGTAGGTTTGGCGGAGTATTCGTG
ACTGGGATCCGCAGTCTCGCGGCATGCTGGCTGAGTACCTATGTGCGGCC
AAAGAGGTGGTTGAGGCGAAGCAAAAACGTTCAGGCGTCGCTGTCCACGT
ACGATTGGGTGGCCGCTGCGGCGGTGTTGGTCAAGAAGATGGTCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig648:227428..228523+

>mRNA_F-serratus_M_contig648.17424.1 ID=mRNA_F-serratus_M_contig648.17424.1|Name=mRNA_F-serratus_M_contig648.17424.1|organism=Fucus serratus male|type=CDS|length=756bp|location=Sequence derived from alignment at F-serratus_M_contig648:227428..228523+ (Fucus serratus male)
CCTGTAGTTCCCAAGAAAAAGAGGAGAAAATATACGACCACTTCTACGAA
TATATATGCTAAAACATATTTGGCCAAAAAGAACTCAAAGGAAGAAGAAT
CCGACTATACTCCGAGGCACACGCCCGTGGGCAAGAAGTTCCAAGCGGCC
ATTCCTGAGCTTCTGTCATATGAAGGAAGAAAAACACGATCTCCAGAAAC
CGGCGCTCAAATGCCTGTAGTTCCCAAGAAAAAGAGGAGAAAATATACGA
CCACTTCTACGAATATATATGCTAAAACATATTTGGCCAAAAAGAACTCA
AAGGAAGAAGAATCCGACTATACTCCGAGGCACACGCCCGTGGGCAAGAA
GTTCCAAGCGGCCATTCCTGAGCTTCTGTCATATGAAGGAAGAAAAACAC
GATCTCCAGAAACCGGCGCTCAAATGGTTTGGCGGAGTATTCGTGACTGG
GATCCGCAGTCTCGCGGCATGCTGGCTGAGTACCTATGTGCGGCCAAAGA
GGTGGTTGAGGCGAAGCAAAAACGTTCAGGCGTCGCTGTCCACGTACGAT
TGGGTGGCCGCTGCGGCGGTGTTGGTCAAGAAGATGGTCCCGTTTGGCGG
AGTATTCGTGACTGGGATCCGCAGTCTCGCGGCATGCTGGCTGAGTACCT
ATGTGCGGCCAAAGAGGTGGTTGAGGCGAAGCAAAAACGTTCAGGCGTCG
CTGTCCACGTACGATTGGGTGGCCGCTGCGGCGGTGTTGGTCAAGAAGAT
GGTCCC
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