mRNA_F-serratus_M_contig648.17423.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig648.17423.1
Unique NamemRNA_F-serratus_M_contig648.17423.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig648.17423.1 vs. uniprot
Match: A0A6H5JX23_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX23_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.730e-17
Identity = 53/118 (44.92%), Postives = 73/118 (61.86%), Query Frame = 1 
Query:    7 EVVDEVFLTPKMDDLEVRVIVRPVMLSVTSSPEPEITVELEGKTGARLTHSYDDSTGDFVPVDNTDSILKRARVRHAEAVDTASRENQEHKTAVNGEH--GKSTGWLLPKRSVFIRKR 354
            E+ +EVFLT K +DL+VR I +P+ LSV ++     T E +   G RLTH++D S+GDF+PV+ TD+I+KRAR RHAE    ASR  +      +G+     S GWLLP R   +  R
Sbjct:  141 EMKNEVFLTTKREDLDVRAIAKPITLSVATTVAERAT-EPKRNMGPRLTHAFDASSGDFIPVEPTDAIVKRARARHAEIATRASRLVEGTAAVRSGKSVTQSSNGWLLPNRKTRVSTR 257
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BLAST of mRNA_F-serratus_M_contig648.17423.1 vs. uniprot
Match: A0A6H5KVI2_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI2_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.220e-16
Identity = 52/107 (48.60%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:   16 DEVFLTPKMDDLEVRVIVRPVMLSVTSSPEPEITVELEGKTGARLTHSYDDSTGDFVPVDNTDSILKRARVRHAEAVDTASRENQEHKTAVNGEHG-KSTGWLLPKR 333
            DEVFLT  M+DL+  +I +P+ L V      +   E +   G RLTHS+D S+GDF PV+ TD+I KRAR+R  EAV  ASR  +E   A +G+   +S+GWLLPKR
Sbjct:  147 DEVFLTNTMEDLDAVLIDKPITLCV--GIRDDSPAEWKNNLGPRLTHSFDASSGDFTPVERTDAIAKRARIRLVEAVARASRRAEEVAAADSGQPAMQSSGWLLPKR 251
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BLAST of mRNA_F-serratus_M_contig648.17423.1 vs. uniprot
Match: D8LCW0_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW0_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.350e-14
Identity = 51/107 (47.66%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:   16 DEVFLTPKMDDLEVRVIVRPVMLSVTSSPEPEITVELEGKTGARLTHSYDDSTGDFVPVDNTDSILKRARVRHAEAVDTASRENQEHKTAVNGEHG-KSTGWLLPKR 333
            DEVFLT K +DL+  +I +PV L V      +     +   G RLTHS+D S+G+F PV+ TD+I KRAR+R  EAV  ASR  +E   A +G+   +S+GWLLPKR
Sbjct:   91 DEVFLTNKREDLDAVLIDKPVTLCV--GIRDDSPAGWKRNLGPRLTHSFDVSSGEFTPVECTDAIAKRARIRLVEAVARASRRAEEVAAADSGQRAMQSSGWLLPKR 195
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BLAST of mRNA_F-serratus_M_contig648.17423.1 vs. uniprot
Match: A0A6H5K0T4_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T4_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.960e-14
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:   16 DEVFLTPKMDDLEVRVIVRPVMLSVTSSPEPEITVELEGKTGARLTHSYDDSTGDFVPVDNTDSILKRARVRHAEAVDTASRENQEHKTAVNGEHGKSTG--WLLPKR 333
            DEVFLT K +DL+   IV+PV +SV +S   +   + + KTG RLTH++D S+GDF PV +T +I+ RAR R AE + +AS  + E+     G    + G  W LPKR
Sbjct:  140 DEVFLTTKEEDLDADAIVKPVAISVAASAAIDTLRKPKRKTGPRLTHAFDASSGDFTPVKDTHAIITRARARQAEGLASASSAS-ENSAGATGSKPVAQGRPWFLPKR 246
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BLAST of mRNA_F-serratus_M_contig648.17423.1 vs. uniprot
Match: D7G9E4_ECTSI (BAH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E4_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 5.100e-13
Identity = 53/138 (38.41%), Postives = 76/138 (55.07%), Query Frame = 1 
Query:   19 EVFLTPKMDDLEVRVIVRPVMLSVTSSPEPEITVELEGKTGARLTHSYDDSTGDFVPVDNTDSILKRARVRHAEAVDTASRENQEHKTAVNGEHGKSTG--WLLPKRSVFIRKRRGEI-------GSHYRRINEVDNG 405
            EVFLT K +DL+   +V+PV +SV +S   +   + + KTG RLTH++D S+GDF PV +T +I+ RAR R AE + +AS    E+  A  G    + G  W LPKR       RG         G+   + + V+NG
Sbjct:  133 EVFLTTKEEDLDADAMVKPVAISVAASATIDTLRKPKRKTGPRLTHAFDASSGDFTPVKDTHAIITRARARQAEGLASAS-SVPENSAAGKGSKPVAQGRPWFLPKRKESQAAGRGRDMAETPARGTSREQDSSVNNG 269
[Close]
BLAST of mRNA_F-serratus_M_contig648.17423.1 vs. uniprot
Match: A0A6H5JLS8_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS8_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.390e-12
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:   16 DEVFLTPKMDDLEVRVIVRPVMLSVTSSPEPEITVELEGKTGARLTHSYDDSTGDFVPVDNTDSILKRARVRHAEAVDTASRENQEHKTAVNGEHG-KSTGWLLPKR 333
            DEV LT K +DL+V +IV+P+ L V +  + ++    +   G RLT  +D S+G+F PV+ T++I KRAR+R  E V   SR  +E   A +G+   +S+GWLLPKR
Sbjct:  150 DEVLLTNKWEDLDVVLIVKPITLRVGA--QDDLLAGWKYNFGPRLTLFFDASSGEFTPVERTETIAKRARIRFVETVARGSRRAEEVAAANSGQPATQSSGWLLPKR 254
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig648.17423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JX23_9PHAE3.730e-1744.92BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KVI2_9PHAE3.220e-1648.60ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LCW0_ECTSI2.350e-1447.66ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K0T4_9PHAE5.960e-1444.44BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G9E4_ECTSI5.100e-1338.41BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JLS8_9PHAE2.390e-1242.99ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig648contigF-serratus_M_contig648:226426..226965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size542
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931996.9896832-CDS-F-serratus_M_contig648:226425..2269651622931996.9896832-CDS-F-serratus_M_contig648:226425..226965Fucus serratus maleCDSF-serratus_M_contig648 226426..226965 +
1690964094.685333-CDS-F-serratus_M_contig648:226425..2269651690964094.685333-CDS-F-serratus_M_contig648:226425..226965Fucus serratus maleCDSF-serratus_M_contig648 226426..226965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig648.17423.1prot_F-serratus_M_contig648.17423.1Fucus serratus malepolypeptideF-serratus_M_contig648 226426..226965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig648.17423.1

>prot_F-serratus_M_contig648.17423.1 ID=prot_F-serratus_M_contig648.17423.1|Name=mRNA_F-serratus_M_contig648.17423.1|organism=Fucus serratus male|type=polypeptide|length=180bp
DDEVVDEVFLTPKMDDLEVRVIVRPVMLSVTSSPEPEITVELEGKTGARL
THSYDDSTGDFVPVDNTDSILKRARVRHAEAVDTASRENQEHKTAVNGEH
GKSTGWLLPKRSVFIRKRRGEIGSHYRRINEVDNGSYSALSSPVHVDSPT
SDMDIGISNNSEPGVFSNSNNEEREKGDGR
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mRNA from alignment at F-serratus_M_contig648:226426..226965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig648.17423.1 ID=mRNA_F-serratus_M_contig648.17423.1|Name=mRNA_F-serratus_M_contig648.17423.1|organism=Fucus serratus male|type=mRNA|length=540bp|location=Sequence derived from alignment at F-serratus_M_contig648:226426..226965+ (Fucus serratus male)
GACGACGAGGTAGTAGATGAAGTATTCCTCACGCCGAAAATGGATGATCT
TGAGGTACGAGTGATTGTAAGACCAGTCATGCTGTCCGTAACTTCAAGCC
CCGAGCCGGAGATTACCGTGGAGTTGGAAGGAAAGACGGGGGCACGTCTG
ACGCATTCGTACGACGACTCTACGGGCGACTTTGTTCCTGTGGATAACAC
TGACTCTATCCTCAAGCGCGCGCGGGTACGACATGCGGAAGCCGTTGATA
CTGCTTCAAGAGAAAATCAAGAGCACAAGACGGCTGTGAATGGCGAGCAT
GGGAAAAGCACTGGGTGGTTACTGCCGAAGCGAAGTGTCTTCATTAGGAA
ACGTCGAGGCGAAATCGGCAGTCACTATCGCCGTATTAATGAGGTCGATA
ATGGATCGTATTCTGCACTTTCCTCGCCGGTTCATGTCGACTCGCCTACC
TCCGATATGGACATAGGAATTTCGAACAACAGTGAGCCTGGGGTGTTTTC
TAACTCCAACAACGAAGAAAGGGAAAAGGGTGACGGCCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig648:226426..226965+

>mRNA_F-serratus_M_contig648.17423.1 ID=mRNA_F-serratus_M_contig648.17423.1|Name=mRNA_F-serratus_M_contig648.17423.1|organism=Fucus serratus male|type=CDS|length=1080bp|location=Sequence derived from alignment at F-serratus_M_contig648:226426..226965+ (Fucus serratus male)
GACGACGAGGTAGTAGATGAAGTATTCCTCACGCCGAAAATGGATGATCT
TGAGGTACGAGTGATTGTAAGACCAGTCATGCTGTCCGTAACTTCAAGCC
CCGAGCCGGAGATTACCGTGGAGTTGGAAGGAAAGACGGGGGCACGTCTG
ACGCATTCGTACGACGACTCTACGGGCGACTTTGTTCCTGTGGATAACAC
TGACTCTATCCTCAAGCGCGCGCGGGTACGACATGCGGAAGCCGTTGATA
CTGCTTCAAGAGAAAATCAAGAGCACAAGACGGCTGTGAATGGCGAGCAT
GGGAAAAGCACTGGGTGGTTACTGCCGAAGCGAAGTGTCTTCATTAGGAA
ACGTCGAGGCGAAATCGGCAGTCACTATCGCCGTATTAATGAGGTCGATA
ATGGATCGTATTCTGCACTTTCCTCGCCGGTTCATGTCGACTCGCCTACC
TCCGATATGGACATAGGAATTTCGAACAACAGTGAGCCTGGGGTGTTTTC
TAACTCCAACAACGAAGAAAGGGAAAAGGGTGACGGCCGCGACGACGAGG
TAGTAGATGAAGTATTCCTCACGCCGAAAATGGATGATCTTGAGGTACGA
GTGATTGTAAGACCAGTCATGCTGTCCGTAACTTCAAGCCCCGAGCCGGA
GATTACCGTGGAGTTGGAAGGAAAGACGGGGGCACGTCTGACGCATTCGT
ACGACGACTCTACGGGCGACTTTGTTCCTGTGGATAACACTGACTCTATC
CTCAAGCGCGCGCGGGTACGACATGCGGAAGCCGTTGATACTGCTTCAAG
AGAAAATCAAGAGCACAAGACGGCTGTGAATGGCGAGCATGGGAAAAGCA
CTGGGTGGTTACTGCCGAAGCGAAGTGTCTTCATTAGGAAACGTCGAGGC
GAAATCGGCAGTCACTATCGCCGTATTAATGAGGTCGATAATGGATCGTA
TTCTGCACTTTCCTCGCCGGTTCATGTCGACTCGCCTACCTCCGATATGG
ACATAGGAATTTCGAACAACAGTGAGCCTGGGGTGTTTTCTAACTCCAAC
AACGAAGAAAGGGAAAAGGGTGACGGCCGC
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