mRNA_F-serratus_M_contig648.17422.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig648.17422.1
Unique NamemRNA_F-serratus_M_contig648.17422.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig648.17422.1 vs. uniprot
Match: A0A6H5JX23_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX23_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.970e-27
Identity = 59/86 (68.60%), Postives = 67/86 (77.91%), Query Frame = 3 
Query:   60 EESDYPPRRTPVGKKFQAAIPELLSYEGRKTR---SAETGAQLVWRSIRDWDPQSRGMLAEYLRAAKEVVKAKQERPGVAVHVRLG 308
            EESD+PPRRT VG  +QA IP+LL  E RK     SA TGA++VWRSIRDWDP SRGML+ YL AAK+ V+AKQ RPGV VHVRLG
Sbjct:  490 EESDFPPRRTLVGNGYQADIPDLLPAEERKAAAPTSAGTGAKMVWRSIRDWDPHSRGMLSSYLEAAKKAVQAKQSRPGVVVHVRLG 575
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BLAST of mRNA_F-serratus_M_contig648.17422.1 vs. uniprot
Match: D7G9E3_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E3_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 8.120e-26
Identity = 56/86 (65.12%), Postives = 67/86 (77.91%), Query Frame = 3 
Query:   60 EESDYPPRRTPVGKKFQAAIPELLSYEGRKTRS---AETGAQLVWRSIRDWDPQSRGMLAEYLRAAKEVVKAKQERPGVAVHVRLG 308
            EESDYPP+RT VG  +QA IP+LL    R+  +   A TGA++VWRSIRDWDP SRGML+ YL AAK+ V+AKQ RPGVA+HVRLG
Sbjct:  288 EESDYPPQRTLVGDGYQADIPDLLPAGERQAAAPTAAGTGAKMVWRSIRDWDPHSRGMLSSYLEAAKKAVQAKQSRPGVAIHVRLG 373
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BLAST of mRNA_F-serratus_M_contig648.17422.1 vs. uniprot
Match: D8LCW2_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW2_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.840e-23
Identity = 56/89 (62.92%), Postives = 65/89 (73.03%), Query Frame = 3 
Query:   60 EESDYPPRRTPVGKKFQAAIPELLSYEGRKTRS----AETGAQLVWRSIRDWDPQSRGMLAEYLRAAKEVVKAKQERPGVAVHVRLGSG 314
            E SD  P++  VG  +QA IP+LLS E RK  +    A TGA++VWRSIR WDPQSR ML+ YL AAK+VVKAKQ  PGVAVHVRLG G
Sbjct:  418 ENSDCAPQQILVGDDYQADIPDLLSAEERKKEAGHPAAGTGAKMVWRSIRKWDPQSRHMLSTYLHAAKDVVKAKQASPGVAVHVRLGDG 506
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BLAST of mRNA_F-serratus_M_contig648.17422.1 vs. uniprot
Match: A0A6H5JLS8_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS8_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.630e-22
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 3 
Query:   60 EESDYPPRRTPVGKKFQAAIPELLSYEGRKTRS----AETGAQLVWRSIRDWDPQSRGMLAEYLRAAKEVVKAKQERPGVAVHVRLG 308
            ++ D  P++  VG  +QA IP+LLS E RK  +    A TGA++VWRSIR+WDPQSR ML+ YL AAK+VVKAKQ  PGVAVHVRLG
Sbjct:  495 DKPDCDPQQILVGDDYQADIPDLLSAEDRKKEAGHPAARTGAKMVWRSIRNWDPQSRHMLSTYLHAAKDVVKAKQASPGVAVHVRLG 581
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BLAST of mRNA_F-serratus_M_contig648.17422.1 vs. uniprot
Match: D8LCW0_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW0_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.300e-21
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 3 
Query:   60 EESDYPPRRTPVGKKFQAAIPELLSYEGRKTRS----AETGAQLVWRSIRDWDPQSRGMLAEYLRAAKEVVKAKQERPGVAVHVRLG 308
            E+SD  P++  VG  +QA IP+LLS E RK  +    A TGA++VWRSIR+WDPQSR ML+ YL AAK+V++ KQ  PGVAVHVRLG
Sbjct:  338 EKSDCDPQQILVGDDYQADIPDLLSAEERKEEAGHPAAGTGAKMVWRSIRNWDPQSRQMLSTYLHAAKDVLQKKQASPGVAVHVRLG 424
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BLAST of mRNA_F-serratus_M_contig648.17422.1 vs. uniprot
Match: A0A6H5K0T4_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T4_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.310e-21
Identity = 49/83 (59.04%), Postives = 61/83 (73.49%), Query Frame = 3 
Query:   75 PPRRTPVGKKFQAAIPELLSYEGRKTRSAE-----TGAQLVWRSIRDWDPQSRGMLAEYLRAAKEVVKAKQERPGVAVHVRLG 308
            PPRRT VG+  Q  IP+LL  E R   +A      TGA++VW+S+RDWDP SRGMLA YL+AA  +V++KQ RPGVA+HVRLG
Sbjct:  485 PPRRTLVGEDHQVDIPDLLPAEDRSKAAAAGRAEGTGAEMVWQSVRDWDPHSRGMLAGYLQAANTMVRSKQARPGVAIHVRLG 567
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BLAST of mRNA_F-serratus_M_contig648.17422.1 vs. uniprot
Match: A0A6H5KVI2_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI2_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.800e-19
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 3 
Query:   60 EESDYPPRRTPVGKKFQAAIPELLSYEGRKTRS----AETGAQLVWRSIRDWDPQSRGMLAEYLRAAKEVVKAKQERPGVAVHVRLG 308
            ++SD  PR+  VG  +QA IP LLS + RK  +    A TGA++VWRSIR+WDPQSR ML+ YL AA +V++ KQ  PGVAVHVRLG
Sbjct:  493 DKSDCDPRQILVGDDYQADIPALLSAQERKKEAGHPAAGTGAKMVWRSIRNWDPQSRQMLSTYLHAATDVLQKKQGFPGVAVHVRLG 579
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig648.17422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JX23_9PHAE1.970e-2768.60BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G9E3_ECTSI8.120e-2665.12ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LCW2_ECTSI2.840e-2362.92ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JLS8_9PHAE2.630e-2260.92ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LCW0_ECTSI2.300e-2159.77ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K0T4_9PHAE2.310e-2159.04BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KVI2_9PHAE1.800e-1957.47ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig648contigF-serratus_M_contig648:115087..116120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size348
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig648.17422.1prot_F-serratus_M_contig648.17422.1Fucus serratus malepolypeptideF-serratus_M_contig648 115087..116099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931996.4302406-CDS-F-serratus_M_contig648:115086..1152551622931996.4302406-CDS-F-serratus_M_contig648:115086..115255Fucus serratus maleCDSF-serratus_M_contig648 115087..115255 -
1690964094.4637723-CDS-F-serratus_M_contig648:115086..1152551690964094.4637723-CDS-F-serratus_M_contig648:115086..115255Fucus serratus maleCDSF-serratus_M_contig648 115087..115255 -
1622931996.450174-CDS-F-serratus_M_contig648:115941..1160991622931996.450174-CDS-F-serratus_M_contig648:115941..116099Fucus serratus maleCDSF-serratus_M_contig648 115942..116099 -
1690964094.4744434-CDS-F-serratus_M_contig648:115941..1160991690964094.4744434-CDS-F-serratus_M_contig648:115941..116099Fucus serratus maleCDSF-serratus_M_contig648 115942..116099 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931996.4715612-UTR-F-serratus_M_contig648:116099..1161201622931996.4715612-UTR-F-serratus_M_contig648:116099..116120Fucus serratus maleUTRF-serratus_M_contig648 116100..116120 -
1690964094.4859602-UTR-F-serratus_M_contig648:116099..1161201690964094.4859602-UTR-F-serratus_M_contig648:116099..116120Fucus serratus maleUTRF-serratus_M_contig648 116100..116120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig648.17422.1

>prot_F-serratus_M_contig648.17422.1 ID=prot_F-serratus_M_contig648.17422.1|Name=mRNA_F-serratus_M_contig648.17422.1|organism=Fucus serratus male|type=polypeptide|length=109bp
MPKHISPKATRRKKNPTILRGARPWARSSKRPFLSSCHMKEEKHDLQKPA
LSWFGGVFVTGIRSLAACWLSTYVRPKRWLRRSKNVQASLSTYVWVAAAA
VLAKKMVLS
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mRNA from alignment at F-serratus_M_contig648:115087..116120-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig648.17422.1 ID=mRNA_F-serratus_M_contig648.17422.1|Name=mRNA_F-serratus_M_contig648.17422.1|organism=Fucus serratus male|type=mRNA|length=1034bp|location=Sequence derived from alignment at F-serratus_M_contig648:115087..116120- (Fucus serratus male)
CAACCACTTCTACGAGTATATATGCCAAAACATATCTCGCCAAAAGCAAC
TCGAAGGAAGAAGAATCCGACTATCCTCCGAGGCGCACGCCCGTGGGCAA
GAAGTTCCAAGCGGCCATTCCTGAGCTCCTGTCATATGAAGGAAGAAAAA
CACGATCTGCAGAAACCGGCGCTCAGCTGGTAAGTGCTGGCCTTTACTCT
CCGGGTAAATGGTATTGGACCCAGGGCTAGTTGCTGCATGCCGTTACGAG
CTGTCTCCTGGCTAACCACTTACGTGATACACAGACATTACTCAGATTGA
TGTCAACTAATTCCCGCGATGTGAAAGAGGTAACCGTTAGCCCTTTAGCT
TGGCCGTTGGCTTGCATTCACCACAGTCACACGGTTATCTGGTTTATGAC
CTGTTCAACCCACGTTCTCAGCTATGTGCTACGTCGGAAAGGCTCGGTCA
CTCGGGGGTGATGATTCGGTCATGACGAGAGGGTCTCAGGTGGCAAGTTG
GATCCCGAGGCCGCACCAAAGTTTTCAATTCGTGTCCAGACGCTGTGCAA
ATTGGTTCTCACTGCTTCGTCTGCTCAATGTGACCATACAATTTCTGAAT
CGTGTTTCCCTTTTCCAAAATAATCACTACCACTGTTTTGATACCCACGA
GTTACCTGGATCCCACATTGGGTACCCGACTCTTATTTCAACCGCTGACT
TGCTAGCTCCGAGTAGGCTAGATGGGGGGAACGCATGCAGCGTGGGGACT
GGAAAATTTCGTGTGTTCTCATAGAAGAAAAAATAAGTTATGTGCAGCAG
CATTCACATCCCACAATTCGTGCGCATTCATTTTTTGGGTGACTGTCAAA
TACCATTGAGTGTAGGTTTGGCGGAGTATTCGTGACTGGGATCCGCAGTC
TCGCGGCATGCTGGCTGAGTACCTACGTGCGGCCAAAGAGGTGGTTAAGG
CGAAGCAAGAACGTCCAGGCGTCGCTGTCCACGTACGTTTGGGTAGCGGC
TGCGGCGGTGTTGGCCAAGAAGATGGTCCTATCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig648:115087..116120-

>mRNA_F-serratus_M_contig648.17422.1 ID=mRNA_F-serratus_M_contig648.17422.1|Name=mRNA_F-serratus_M_contig648.17422.1|organism=Fucus serratus male|type=CDS|length=654bp|location=Sequence derived from alignment at F-serratus_M_contig648:115087..116120- (Fucus serratus male)
ATGCCAAAACATATCTCGCCAAAAGCAACTCGAAGGAAGAAGAATCCGAC
TATCCTCCGAGGCGCACGCCCGTGGGCAAGAAGTTCCAAGCGGCCATTCC
TGAGCTCCTGTCATATGAAGGAAGAAAAACACGATCTGCAGAAACCGGCG
CTCAGCTGATGCCAAAACATATCTCGCCAAAAGCAACTCGAAGGAAGAAG
AATCCGACTATCCTCCGAGGCGCACGCCCGTGGGCAAGAAGTTCCAAGCG
GCCATTCCTGAGCTCCTGTCATATGAAGGAAGAAAAACACGATCTGCAGA
AACCGGCGCTCAGCTGGTTTGGCGGAGTATTCGTGACTGGGATCCGCAGT
CTCGCGGCATGCTGGCTGAGTACCTACGTGCGGCCAAAGAGGTGGTTAAG
GCGAAGCAAGAACGTCCAGGCGTCGCTGTCCACGTACGTTTGGGTAGCGG
CTGCGGCGGTGTTGGCCAAGAAGATGGTCCTATCAGTTTGGCGGAGTATT
CGTGACTGGGATCCGCAGTCTCGCGGCATGCTGGCTGAGTACCTACGTGC
GGCCAAAGAGGTGGTTAAGGCGAAGCAAGAACGTCCAGGCGTCGCTGTCC
ACGTACGTTTGGGTAGCGGCTGCGGCGGTGTTGGCCAAGAAGATGGTCCT
ATCA
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