mRNA_F-serratus_M_contig647.17412.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: V9XN14_9NOCA (Uncharacterized protein n=4 Tax=Rhodococcus TaxID=1827 RepID=V9XN14_9NOCA) HSP 1 Score: 81.6 bits (200), Expect = 1.650e-17 Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 1
Query: 1 TTPAGIEGCVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNIN-------GTVYILYQCGTLKPELSN-MTVQEYISVPVTRVATGTTNHIPRI 273
T A + C++D+D+S VDYFP+K+EI A+ F++TYE SY+VL +N Y+L +CG PEL+ + + I VP+TR+ TG+T H+P +
Sbjct: 31 TENAASDECITDFDAS--VDYFPDKSEIVDAENFSITYEKSYQVLTVNEPFTGAKSESYVLVKCGASAPELTGELATAQQIHVPITRLYTGSTTHLPLV 127
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: A0A7S3YM08_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YM08_HETAK) HSP 1 Score: 77.4 bits (189), Expect = 1.650e-14 Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 1
Query: 22 GCVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNINGTVY------ILYQCGTLKPELSNMTVQEYISVPVTRVATGTTNHIPRIEVRFE 288
GCV+DY+++ DYFP KA I+YA+ F +TY +SYK++++N Y I YQCGT PE N T ++ +PV VA +T IP IE+ E
Sbjct: 27 GCVTDYNNTK--DYFPHKATIEYAEYFNITYNNSYKIIDVNAGSYYGTQKIIAYQCGTPIPEWENDT-DIFVEIPVKYVAVSSTPMIPYIEILGE 118
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: A0A7R9U9N4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9N4_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 5.210e-12 Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 1
Query: 25 CVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNI----NGTVYILYQCGTLKPELSNMTVQEYISVPVTRVATGTTNHIPRIE 276
CV+D +VDYFP+K + +A F VTY +SYKV+ + N ++LYQCGT P + + +Y SVP+T+ T +P IE
Sbjct: 12 CVADGQYDGSVDYFPDKILVDFATHFEVTYNNSYKVVEVTAPGNEQKFVLYQCGTPVPNVPD--ADKYFSVPITKSVVAVTTLLPWIE 97
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: A0A197JJ96_9FUNG (Uncharacterized protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JJ96_9FUNG) HSP 1 Score: 68.2 bits (165), Expect = 2.800e-11 Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 1
Query: 13 GIEGCVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVL-NINGTV-YILYQCGTLKPELS---NMTVQEYISVPVTRVATGTTNHIPRIEV 279
G + CV++Y+ S NVDYFP K + A F V Y ++YKV+ N G ++LYQCGT P S N T+ ++SVPV VA+ TT + IE+
Sbjct: 62 GGQNCVTNYNPSDNVDYFPSKITVDNAALFKVRYANNYKVVTNTAGKKDFVLYQCGTTPPSASQFANDTI--FVSVPVQAVASLTTTSVAYIEM 153
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: A0A166P882_9ACTN (Iron complex transport system substrate-binding protein n=2 Tax=Frankia sp. EI5c TaxID=683316 RepID=A0A166P882_9ACTN) HSP 1 Score: 68.2 bits (165), Expect = 2.990e-11 Identity = 33/89 (37.08%), Postives = 54/89 (60.67%), Query Frame = 1
Query: 25 CVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNINGTV-------YILYQCGTLKPELS-NMTVQEYISVPVTRVATGTTNHIP 267
CV+ +D N DYFP + ++++Q F +TYE +Y+VL + Y+LY+CGT KPEL+ ++ I VP+ + +G+T H+P
Sbjct: 39 CVTSFDE--NTDYFPVHSTVEHSQNFTITYEKAYQVLTVKEPYPDGKPESYVLYRCGTPKPELTGDLAGATRIEVPIRSIYSGSTTHLP 125
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: UPI0019B58EC6 (ABC transporter substrate-binding protein n=2 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019B58EC6) HSP 1 Score: 68.2 bits (165), Expect = 3.030e-11 Identity = 34/94 (36.17%), Postives = 56/94 (59.57%), Query Frame = 1
Query: 19 EGCVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNI--------NGTVYILYQCGTLKPELSNMTVQEYISVPVTRVATGTTNHIPRIE 276
+GCV+DYD++ VDYFP+KAE +YA V Y ++YKV+ + Y+L QCGT P +++ + I VP+ R+ + +T +P ++
Sbjct: 38 DGCVTDYDTA--VDYFPDKAEFEYATGVEVEYFNNYKVVTVLQPWPGADTSYQYVLVQCGTPAPAVTDFPNAQVIEVPIERIISMSTTFLPPLD 129
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: A0A844M9C0_9CYAN (ABC transporter substrate-binding protein n=2 Tax=Scytonema sp. UIC 10036 TaxID=2304196 RepID=A0A844M9C0_9CYAN) HSP 1 Score: 67.4 bits (163), Expect = 5.760e-11 Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 1
Query: 16 IEGCVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNI-----NGTV---YILYQCGTLKPELSNMTVQEYISVPVTRVATGTTNHIPRIE 276
++GCV +Y + N YFPEKA +KYA+ F V Y +YKV+ I N V Y+L QCGT PE T + I +P+ + + +T H+P ++
Sbjct: 56 LQGCVQNYKPTIN--YFPEKASVKYAKGFVVEYRDNYKVITIKNPWRNADVTFQYVLVQCGTPIPEEYKET--QIIQIPINTMVSLSTTHLPHLD 146
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: UPI0006451769 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006451769) HSP 1 Score: 67.4 bits (163), Expect = 5.890e-11 Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 10 AGIEGCVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLN--INGTVYILYQCGTLKPELSNMTV-QEYISVPVTRVATGTTNHIP 267
+ ++ C+ + +A+V+YFP + I + F VTY +SYKV+ +GT Y+LYQCG+ KP+ S ++ SVPVT+V T T + P
Sbjct: 30 SNLQECIPNGQYNASVNYFPVRTVISNSTLFNVTYTNSYKVVTDTADGTTYVLYQCGSPKPDASLFAAGAKFFSVPVTKVLTSQTPNNP 118
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: A0A2H2X127_9CYAN (ABC transporter, periplasmic-binding protein n=2 Tax=unclassified Calothrix TaxID=2619626 RepID=A0A2H2X127_9CYAN) HSP 1 Score: 64.3 bits (155), Expect = 6.950e-10 Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 1
Query: 25 CVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNIN--------GTVYILYQCGTLKPELSNMTVQEY-ISVPVTRVATGTTNHIPRI 273
CV Y+++ DYFP+K + A+ F V Y + YKV+ IN G YIL QCGT P++S+ ++ Y I+VPV V + +T H+P +
Sbjct: 43 CVEQYEATR--DYFPDKVSVTRAKGFNVEYYNHYKVVTINNPWKGSKTGFKYILVQCGTPAPKISDASLNTYYITVPVNSVISLSTTHLPHL 132
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: A0A7U3NMK3_9CYAN (ABC transporter substrate-binding protein n=1 Tax=Anabaenopsis elenkinii CCIBt3563 TaxID=2779889 RepID=A0A7U3NMK3_9CYAN) HSP 1 Score: 62.4 bits (150), Expect = 3.300e-9 Identity = 38/95 (40.00%), Postives = 48/95 (50.53%), Query Frame = 1
Query: 7 PAGIEGCVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNINGT--------VYILYQCGTLKPELSNMTVQEYISVPVTRVATGTTNHIP 267
P I C YD N+DYFP KA I YAQ F V Y +YKV+ + Y+L QCG PE N + I+VPV V + +T H+P
Sbjct: 31 PNLINSCGQTYDP--NLDYFPVKATINYAQGFDVEYHKAYKVVTVKSPWRDANRDFKYVLVQCGAPVPE--NFRETQVITVPVDSVVSLSTTHLP 121 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig647.17412.1 >prot_F-serratus_M_contig647.17412.1 ID=prot_F-serratus_M_contig647.17412.1|Name=mRNA_F-serratus_M_contig647.17412.1|organism=Fucus serratus male|type=polypeptide|length=101bp TTPAGIEGCVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNINGTback to top mRNA from alignment at F-serratus_M_contig647:29022..29324+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig647.17412.1 ID=mRNA_F-serratus_M_contig647.17412.1|Name=mRNA_F-serratus_M_contig647.17412.1|organism=Fucus serratus male|type=mRNA|length=303bp|location=Sequence derived from alignment at F-serratus_M_contig647:29022..29324+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig647:29022..29324+ >mRNA_F-serratus_M_contig647.17412.1 ID=mRNA_F-serratus_M_contig647.17412.1|Name=mRNA_F-serratus_M_contig647.17412.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig647:29022..29324+ (Fucus serratus male)back to top |