mRNA_F-serratus_M_contig647.17416.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig647.17416.1
Unique NamemRNA_F-serratus_M_contig647.17416.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig647.17416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig647contigF-serratus_M_contig647:208295..208975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size293
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig647.17416.1prot_F-serratus_M_contig647.17416.1Fucus serratus malepolypeptideF-serratus_M_contig647 208295..208970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931995.2121162-CDS-F-serratus_M_contig647:208294..2085491622931995.2121162-CDS-F-serratus_M_contig647:208294..208549Fucus serratus maleCDSF-serratus_M_contig647 208295..208549 -
1690964093.895955-CDS-F-serratus_M_contig647:208294..2085491690964093.895955-CDS-F-serratus_M_contig647:208294..208549Fucus serratus maleCDSF-serratus_M_contig647 208295..208549 -
1622931995.224933-CDS-F-serratus_M_contig647:208937..2089701622931995.224933-CDS-F-serratus_M_contig647:208937..208970Fucus serratus maleCDSF-serratus_M_contig647 208938..208970 -
1690964093.9056017-CDS-F-serratus_M_contig647:208937..2089701690964093.9056017-CDS-F-serratus_M_contig647:208937..208970Fucus serratus maleCDSF-serratus_M_contig647 208938..208970 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931995.2407537-UTR-F-serratus_M_contig647:208970..2089751622931995.2407537-UTR-F-serratus_M_contig647:208970..208975Fucus serratus maleUTRF-serratus_M_contig647 208971..208975 -
1690964093.9152038-UTR-F-serratus_M_contig647:208970..2089751690964093.9152038-UTR-F-serratus_M_contig647:208970..208975Fucus serratus maleUTRF-serratus_M_contig647 208971..208975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig647.17416.1

>prot_F-serratus_M_contig647.17416.1 ID=prot_F-serratus_M_contig647.17416.1|Name=mRNA_F-serratus_M_contig647.17416.1|organism=Fucus serratus male|type=polypeptide|length=96bp
MFDTVLRCLRQAAENMYRDLPRQQEVNPRPTKEGFVNELLRNELAVTTED
SKNRGGRKTPISPLGGAVLQSNQHLFQRVYDAYRRCGGRWNRHQV*
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mRNA from alignment at F-serratus_M_contig647:208295..208975-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig647.17416.1 ID=mRNA_F-serratus_M_contig647.17416.1|Name=mRNA_F-serratus_M_contig647.17416.1|organism=Fucus serratus male|type=mRNA|length=681bp|location=Sequence derived from alignment at F-serratus_M_contig647:208295..208975- (Fucus serratus male)
GGGATATGTTCGATACGGTCCTGCGGTGTCTGCGGCAGGTGAAAGATGAT
ACGTTGCCTCGACAGAGGGGCGCTTTCCATTCGGGTAAATATATAGAGCA
GGATATCGTAATAATAGAATAGTACATTTAACGAGTCAATAAATGCTACG
GTACTGTTATTGTAGAGAAATGCCCGGTCTTGAAGGGCATGTTTCGATCG
TGTTTTGTTTGGACATTTATCACCTTTTACGCATTACTGCTAATTGAGTG
TTTCTCTGTTTAAGGGTAAAAGAGCGTTAGAGATTAACCGCGTACGTTTG
CCCGACGAGACGAAGTGTATGTGATATCAACATAGTTTTATATACGTACG
AAGTATATATAATGTTCATATACGGGGCTTCATGTATTATATCTCGCATG
TATCAATCCTCGCGGTCGTGACGCAGGCGGCTGAAAATATGTACCGCGAC
CTGCCGCGGCAACAAGAAGTCAATCCGAGGCCAACGAAGGAAGGTTTCGT
TAACGAGCTGCTGCGCAATGAGCTGGCGGTGACCACGGAGGACTCCAAGA
ACCGAGGAGGACGGAAAACGCCGATTTCGCCATTAGGGGGTGCCGTACTC
CAAAGCAATCAGCACCTGTTCCAGCGGGTGTACGACGCGTACAGGCGGTG
TGGGGGCCGCTGGAACAGACATCAGGTATAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig647:208295..208975-

>mRNA_F-serratus_M_contig647.17416.1 ID=mRNA_F-serratus_M_contig647.17416.1|Name=mRNA_F-serratus_M_contig647.17416.1|organism=Fucus serratus male|type=CDS|length=576bp|location=Sequence derived from alignment at F-serratus_M_contig647:208295..208975- (Fucus serratus male)
ATGTTCGATACGGTCCTGCGGTGTCTGCGGCAGATGTTCGATACGGTCCT
GCGGTGTCTGCGGCAGGCGGCTGAAAATATGTACCGCGACCTGCCGCGGC
AACAAGAAGTCAATCCGAGGCCAACGAAGGAAGGTTTCGTTAACGAGCTG
CTGCGCAATGAGCTGGCGGTGACCACGGAGGACTCCAAGAACCGAGGAGG
ACGGAAAACGCCGATTTCGCCATTAGGGGGTGCCGTACTCCAAAGCAATC
AGCACCTGTTCCAGCGGGTGTACGACGCGTACAGGCGGTGTGGGGGCCGC
TGGAACAGACATCAGGTATAGGCGGCTGAAAATATGTACCGCGACCTGCC
GCGGCAACAAGAAGTCAATCCGAGGCCAACGAAGGAAGGTTTCGTTAACG
AGCTGCTGCGCAATGAGCTGGCGGTGACCACGGAGGACTCCAAGAACCGA
GGAGGACGGAAAACGCCGATTTCGCCATTAGGGGGTGCCGTACTCCAAAG
CAATCAGCACCTGTTCCAGCGGGTGTACGACGCGTACAGGCGGTGTGGGG
GCCGCTGGAACAGACATCAGGTATAG
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