mRNA_F-serratus_M_contig6466.17406.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig6466.17406.1 vs. uniprot
Match: D7FQ21_ECTSI (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ21_ECTSI) HSP 1 Score: 362 bits (930), Expect = 1.920e-121 Identity = 185/276 (67.03%), Postives = 224/276 (81.16%), Query Frame = 1
Query: 34 MTRIIAAMAAFATLFTSGWGFIPPLRGLGGNSLSHGNAAESRSQATAPRGVSYRPTTAELAT---TEKRAVFGGGCFWCIEAVFKKLDGVQKVVSGYAGGTLENPTYRDVASGRSGHAEVVLVEYDSSIVNYEELLEVFWKSHDPTQGNRQGLDMGSEYRSIILCEDEDQLRVARASKEARQAKLNKEAVLGKVVGAVLGKKEGENVVDITTTVDMLPVFWEAEKASFIMFSVHQNYYAKNPLSPYCVMNVGTKLVKLRPDISRINRLSREREQAS 852
MT+ + MAA L + F+ GL +S + + S + + +GV+YRP ++ AT TEK+AVFGGGCFWCIEAVFK LDGV KVVSGYAGGT+ENPTYRDV SGR+GHAEVVL+EYD ++V ++ELLEVFWK+HDPTQGNRQG+D+G+EYRSIILCEDE+QL +A AS+EA+QAK+N EAVLG+VVGAV GKKEGEN+V+ITTT+D+L VFWEAEK VHQ+YYA+NPLSPYC+MNVGTKLVKLRPDISRINRLSR+RE AS
Sbjct: 1 MTKTLPVMAALFALLSRTGAFVSS-PGLSKSSFATTDRGTSDAVRSRRQGVAYRPCSSAAATVMATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRTGHAEVVLLEYDPTVVTFDELLEVFWKTHDPTQGNRQGMDIGTEYRSIILCEDEEQLDMAVASREAKQAKINAEAVLGRVVGAVTGKKEGENIVNITTTIDLLQVFWEAEK-------VHQDYYARNPLSPYCIMNVGTKLVKLRPDISRINRLSRDREVAS 268
BLAST of mRNA_F-serratus_M_contig6466.17406.1 vs. uniprot
Match: A0A2R6CQZ6_9EURY (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Halobacteriales archaeon QH_2_65_14 TaxID=1919151 RepID=A0A2R6CQZ6_9EURY) HSP 1 Score: 178 bits (451), Expect = 1.020e-50 Identity = 95/190 (50.00%), Postives = 118/190 (62.11%), Query Frame = 1
Query: 232 AVFGGGCFWCIEAVFKKLDGVQKVVSGYAGGTLENPTYRDVASGRSGHAEVVLVEYDSSIVNYEELLEVFWKSHDPTQGNRQGLDMGSEYRSIILCEDEDQLRVARASKEARQAKLNKEAVLGKVVGAVLGKKEGENVVDITTTVDMLPVFWEAEKASFIMFSVHQNYYAKNPLSPYCVMNVGTKLVKLR 801
A FGGGCFWC+EA FK+LDGVQ V SGYAGG ++PTY V SG +GHAEVV VEYD + Y+ELLEVF+ HDPTQ NRQG D+G++YRSI+L DEDQ R ARA EA +GE D+ T ++ L F+EAE+ HQ+Y+ KNP YC M+ K+ K+R
Sbjct: 4 ATFGGGCFWCVEAAFKELDGVQSVTSGYAGGHADDPTYEGVCSGSTGHAEVVQVEYDPDRIGYDELLEVFFSVHDPTQLNRQGPDVGTQYRSIVLYHDEDQKRQARAYVEAL---------------------DGEYDDDVVTELEPLETFYEAEE-------YHQDYFEKNPNDAYCRMHARPKVKKVR 165
BLAST of mRNA_F-serratus_M_contig6466.17406.1 vs. uniprot
Match: A0A650A413_9EURY (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Halorhabdus sp. CBA1104 TaxID=1380432 RepID=A0A650A413_9EURY) HSP 1 Score: 178 bits (451), Expect = 1.050e-50 Identity = 92/190 (48.42%), Postives = 122/190 (64.21%), Query Frame = 1
Query: 232 AVFGGGCFWCIEAVFKKLDGVQKVVSGYAGGTLENPTYRDVASGRSGHAEVVLVEYDSSIVNYEELLEVFWKSHDPTQGNRQGLDMGSEYRSIILCEDEDQLRVARASKEARQAKLNKEAVLGKVVGAVLGKKEGENVVDITTTVDMLPVFWEAEKASFIMFSVHQNYYAKNPLSPYCVMNVGTKLVKLR 801
A FGGGCFWC EA K+LDG++ V SGYAGG +ENPTYR+V SG +GHAEVV VEYDS++++Y+ELLEVF+ +HDPTQ NRQG D+G++YRSI+L D+DQ +A A EA A+ ++E V T + L F+ AE+ HQ+Y+ KNP YC M+ K+ K+R
Sbjct: 4 ATFGGGCFWCTEAAMKELDGIESVTSGYAGGHVENPTYREVCSGDTGHAEVVQVEYDSAVISYDELLEVFFATHDPTQLNRQGPDVGTQYRSIVLYHDDDQRELAAAYIEALDAEYDEEVV---------------------TELTELDEFYRAEEK-------HQDYFEKNPTDAYCQMHAAPKVEKVR 165
BLAST of mRNA_F-serratus_M_contig6466.17406.1 vs. uniprot
Match: A0A643JSG6_9EURY (Peptide methionine sulfoxide reductase MsrA n=2 Tax=Haloferax TaxID=2251 RepID=A0A643JSG6_9EURY) HSP 1 Score: 178 bits (451), Expect = 1.120e-50 Identity = 92/192 (47.92%), Postives = 118/192 (61.46%), Query Frame = 1
Query: 226 KRAVFGGGCFWCIEAVFKKLDGVQKVVSGYAGGTLENPTYRDVASGRSGHAEVVLVEYDSSIVNYEELLEVFWKSHDPTQGNRQGLDMGSEYRSIILCEDEDQLRVARASKEARQAKLNKEAVLGKVVGAVLGKKEGENVVDITTTVDMLPVFWEAEKASFIMFSVHQNYYAKNPLSPYCVMNVGTKLVKLR 801
K A FGGGCFWCIEA FK+LDG+ V SGYAGG++ENPTY V SG +GHAEV+ VEYD ++V Y+ELLEVF+ HDPTQ NRQG D+G++YRSI+L D+DQ R A A EA + D+ T ++ L F+EAE + HQ+Y+ KNP YC + K+ K+R
Sbjct: 5 KSATFGGGCFWCIEAAFKELDGISSVTSGYAGGSVENPTYEQVCSGNTGHAEVIQVEYDPAVVGYDELLEVFFAVHDPTQLNRQGPDVGTQYRSIVLYHDDDQQRQAAAYIEALDESYDD---------------------DVVTELEPLETFYEAE-------TYHQDYFEKNPNDAYCRFHASPKIEKVR 168
BLAST of mRNA_F-serratus_M_contig6466.17406.1 vs. uniprot
Match: A0A7S0CNL4_9EUKA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CNL4_9EUKA) HSP 1 Score: 181 bits (459), Expect = 1.160e-50 Identity = 100/211 (47.39%), Postives = 131/211 (62.09%), Query Frame = 1
Query: 226 KRAVFGGGCFWCIEAVFKKLDGVQKVVSGYAGGTLENPTYRDVASGRSGHAEVVLVEYDSSIVNYEELLEVFWKSHDPTQGNRQGLDMGSEYRSIILCEDEDQLRVARASKEARQAKLNKEAVLGKVVGAVLGKKEGENVVDITTTVDMLPVFWEAEKASFIMFSVHQNYYAKNPLSPYCVMNVGTKLVKLRPDISRINRLSREREQAS*D 858
+RAVFGGGCFWCIEAVF++L GV+KVVSGYAGGT NPTY V SG+SGHAEVV VE++ + Y++LL+VFW +HDPT NRQGLD+GS+YRS+I EDQ A S + + + G + G+K I T ++ L F AE S HQNYY K P PYC +N+ K++K++ ++ L R RE + D
Sbjct: 77 QRAVFGGGCFWCIEAVFRELKGVKKVVSGYAGGTSSNPTYEAVCSGKSGHAEVVAVEFNPKEIAYKDLLDVFWAAHDPTTKNRQGLDIGSQYRSVIFYTSEDQRTSALESINKQSKYQSSRRLFGFIP---TGRK-------IVTELEPLKQFHSAE-------SYHQNYYKKMPYVPYCSVNIAPKIIKIK---TKFQHLLRGREDDALD 267
BLAST of mRNA_F-serratus_M_contig6466.17406.1 vs. uniprot
Match: A0A2V5VVI7_9BACT (Peptide methionine sulfoxide reductase MsrA n=4 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5VVI7_9BACT) HSP 1 Score: 179 bits (453), Expect = 1.240e-50 Identity = 91/209 (43.54%), Postives = 130/209 (62.20%), Query Frame = 1
Query: 196 PTTAELATTEKR--AVFGGGCFWCIEAVFKKLDGVQKVVSGYAGGTLENPTYRDVASGRSGHAEVVLVEYDSSIVNYEELLEVFWKSHDPTQGNRQGLDMGSEYRSIILCEDEDQLRVARASKEARQAKLNKEAVLGKVVGAVLGKKEGENVVDITTTVDMLPVFWEAEKASFIMFSVHQNYYAKNPLSPYCVMNVGTKLVKLRPDISR 816
P+ + T K A FGGGCFWC+EAVF++LDGV+ V SGYAGGT ENPTY++V +G +GHAEV+ +E+D ++YE+LLEVFW++HDPT NRQG D G++YRS+IL ++ Q + A SKE Q + + I T + L F++AE+ HQ+Y+ KNP +PYC + + KL KL+P +++
Sbjct: 21 PSDKTMNATNKTELATFGGGCFWCLEAVFERLDGVKSVTSGYAGGTKENPTYKEVCTGATGHAEVIQIEFDPQKISYEKLLEVFWEAHDPTTMNRQGADAGTQYRSVILYHNDAQKQAAEKSKELAQWRFPR---------------------PIVTEIIPLTKFFKAEE-------YHQDYFRKNPNAPYCAVVISPKLEKLKPKLAK 201
BLAST of mRNA_F-serratus_M_contig6466.17406.1 vs. uniprot
Match: V4HHG4_9EURY (Peptide methionine sulfoxide reductase MsrA n=2 Tax=Candidatus Halobonum TaxID=1431544 RepID=V4HHG4_9EURY) HSP 1 Score: 177 bits (449), Expect = 2.290e-50 Identity = 92/192 (47.92%), Postives = 119/192 (61.98%), Query Frame = 1
Query: 226 KRAVFGGGCFWCIEAVFKKLDGVQKVVSGYAGGTLENPTYRDVASGRSGHAEVVLVEYDSSIVNYEELLEVFWKSHDPTQGNRQGLDMGSEYRSIILCEDEDQLRVARASKEARQAKLNKEAVLGKVVGAVLGKKEGENVVDITTTVDMLPVFWEAEKASFIMFSVHQNYYAKNPLSPYCVMNVGTKLVKLR 801
+RA FGGGCFWC EA K+LDGV++V SGYAGG E PTYR+V SG +GHAEVV VEYDS +V Y+ELLEVF+ +HDPTQ NRQG D+G++YRSI+L D+DQ R A EA + + D+ T ++ L F+ AE+ HQ+Y+ KNP YC M+ K+ K+R
Sbjct: 5 ERATFGGGCFWCTEAAMKELDGVREVTSGYAGGETEEPTYREVCSGDTGHAEVVQVEYDSGVVGYDELLEVFFATHDPTQLNRQGPDVGTQYRSIVLYHDDDQRRQVEAYGEALDEEYDD---------------------DVVTEIEPLETFYRAEEK-------HQDYFEKNPNDAYCQMHAAPKVEKVR 168
BLAST of mRNA_F-serratus_M_contig6466.17406.1 vs. uniprot
Match: A0A0W1SKA7_9EURY (Peptide methionine sulfoxide reductase MsrA n=3 Tax=Haloferax TaxID=2251 RepID=A0A0W1SKA7_9EURY) HSP 1 Score: 177 bits (448), Expect = 3.130e-50 Identity = 91/194 (46.91%), Postives = 119/194 (61.34%), Query Frame = 1
Query: 220 TEKRAVFGGGCFWCIEAVFKKLDGVQKVVSGYAGGTLENPTYRDVASGRSGHAEVVLVEYDSSIVNYEELLEVFWKSHDPTQGNRQGLDMGSEYRSIILCEDEDQLRVARASKEARQAKLNKEAVLGKVVGAVLGKKEGENVVDITTTVDMLPVFWEAEKASFIMFSVHQNYYAKNPLSPYCVMNVGTKLVKLR 801
+ + A FGGGCFWCIEA FK+LDG+ V SGYAGGT+ENPTY V SG +GHAEV+ VEYD S+V+Y+ELL+VF+ HDPTQ NRQG D+G++YRSI+L D+DQ R+A A EA + D+ T + F+EAE + HQ+Y+ KNP YC + K+ K+R
Sbjct: 3 SSQTATFGGGCFWCIEAAFKELDGISDVTSGYAGGTVENPTYEQVCSGTTGHAEVIQVEYDPSVVDYDELLDVFFAVHDPTQLNRQGPDVGTQYRSIVLYHDDDQRRLAEAYVEALDDSYDD---------------------DVVTELAPFETFYEAE-------AYHQDYFEKNPNDAYCQFHASPKIEKVR 168
BLAST of mRNA_F-serratus_M_contig6466.17406.1 vs. uniprot
Match: A0A2V6FFJ1_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6FFJ1_9BACT) HSP 1 Score: 176 bits (445), Expect = 8.720e-50 Identity = 91/204 (44.61%), Postives = 130/204 (63.73%), Query Frame = 1
Query: 211 LATTEKR--AVFGGGCFWCIEAVFKKLDGVQKVVSGYAGGTLENPTYRDVASGRSGHAEVVLVEYDSSIVNYEELLEVFWKSHDPTQGNRQGLDMGSEYRSIILCEDEDQLRVARASKEARQAKLNKEAVLGKVVGAVLGKKEGENVVDITTTVDMLPVFWEAEKASFIMFSVHQNYYAKNPLSPYCVMNVGTKLVKLRPDISR 816
+ TT K A GGGCFWC+EAVF++L+GV+ V SGYAGGT ENPTY++V G +GHAEV+ +E+D ++YE+LLEVFW++HDPT NRQG D+G++YRSIIL +E Q + A S++A Q K G++V T + L F++AE HQ+Y+ +P +PYC + +G KL KL+P +++
Sbjct: 1 MNTTNKTELATLGGGCFWCLEAVFERLEGVKSVTSGYAGGTKENPTYKEVCLGATGHAEVIQIEFDPQKISYEKLLEVFWQAHDPTTLNRQGADVGTQYRSIILYHNETQKKAAEESRQAAQWKST-----GRIV----------------TEIVPLTKFYKAE-------DYHQDYFRNHPNAPYCAVVIGPKLEKLKPKLAK 176
BLAST of mRNA_F-serratus_M_contig6466.17406.1 vs. uniprot
Match: UPI000EF66E6B (peptide-methionine (S)-S-oxide reductase MsrA n=2 Tax=Natronorubrum halophilum TaxID=1702106 RepID=UPI000EF66E6B) HSP 1 Score: 175 bits (444), Expect = 1.350e-49 Identity = 96/192 (50.00%), Postives = 119/192 (61.98%), Query Frame = 1
Query: 226 KRAVFGGGCFWCIEAVFKKLDGVQKVVSGYAGGTLENPTYRDVASGRSGHAEVVLVEYDSSIVNYEELLEVFWKSHDPTQGNRQGLDMGSEYRSIILCEDEDQLRVARASKEARQAKLNKEAVLGKVVGAVLGKKEGENVVDITTTVDMLPVFWEAEKASFIMFSVHQNYYAKNPLSPYCVMNVGTKLVKLR 801
KRA FGGGCFWC+EA ++L+GV+ V SGYAGG ENPTYR+V SGR+GHAEVV +EYD + YE+LLEVF+ HDPT NR+G D+GS+YRS I D+DQL A EA A L E G EG I T ++ L F+EAE+ HQNY+ KNP YC M+ K+ K+R
Sbjct: 2 KRATFGGGCFWCVEAAMEQLEGVESVTSGYAGGHTENPTYREVCSGRTGHAEVVQIEYDPDEIAYEDLLEVFFTIHDPTTLNREGPDVGSQYRSAIYAHDDDQLETA----EAFAAALEDE-----------GLYEG-----IVTEIEPLETFYEAEEK-------HQNYFEKNPNDAYCSMHAAPKVEKVR 166 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6466.17406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6466.17406.1 >prot_F-serratus_M_contig6466.17406.1 ID=prot_F-serratus_M_contig6466.17406.1|Name=mRNA_F-serratus_M_contig6466.17406.1|organism=Fucus serratus male|type=polypeptide|length=274bp MTRIIAAMAAFATLFTSGWGFIPPLRGLGGNSLSHGNAAESRSQATAPRGback to top mRNA from alignment at F-serratus_M_contig6466:7337..18992+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6466.17406.1 ID=mRNA_F-serratus_M_contig6466.17406.1|Name=mRNA_F-serratus_M_contig6466.17406.1|organism=Fucus serratus male|type=mRNA|length=11656bp|location=Sequence derived from alignment at F-serratus_M_contig6466:7337..18992+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6466:7337..18992+ >mRNA_F-serratus_M_contig6466.17406.1 ID=mRNA_F-serratus_M_contig6466.17406.1|Name=mRNA_F-serratus_M_contig6466.17406.1|organism=Fucus serratus male|type=CDS|length=1644bp|location=Sequence derived from alignment at F-serratus_M_contig6466:7337..18992+ (Fucus serratus male)back to top |