mRNA_F-serratus_M_contig6456.17399.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6456.17399.1
Unique NamemRNA_F-serratus_M_contig6456.17399.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6456.17399.1 vs. uniprot
Match: D8LHI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI4_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 5.600e-65
Identity = 103/160 (64.38%), Postives = 126/160 (78.75%), Query Frame = 2
Query:  203 KTMIVKSYGINTAGAFAFAFNVIYPVYFAGSGDSTENFLKAYRMALTGNFLSGVLSTILGVLGPQMLTIIPPAALLVPLAGVGFAFLGLEQAVASFSAPMVGFLPITFMFLSWYANVRIGWENFKIPEVLQVILVGVVLGWITGLNNLSDVGDARDFVRW 682
            +    + YGINT GAFAF FN+IYPVYF+G+G  TENF+KAY +AL  NF+SG++S ++G  GPQML ++PPAALLVP+AG+GFAFLGLEQA   F AP+VGFL IT +FL WYANVRIGW N++ PE LQVI+VGV+LGW TGLN   DV  A D V+W
Sbjct:   85 RAFTAQPYGINTPGAFAFVFNIIYPVYFSGTGTPTENFIKAYNVALAANFISGIISVVMGTFGPQMLRVVPPAALLVPVAGIGFAFLGLEQATTPFGAPLVGFLTITTLFLGWYANVRIGWGNYRCPEALQVIIVGVILGWATGLNESEDVDAAVDLVKW 244          
BLAST of mRNA_F-serratus_M_contig6456.17399.1 vs. uniprot
Match: A0A448ZC90_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZC90_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.130e-47
Identity = 86/154 (55.84%), Postives = 115/154 (74.68%), Query Frame = 2
Query:  224 YGINTAGAFAFAFNVIYPVYFA-GSGDSTENFLKAYRMALTGNFLSGVLSTILGVLGPQMLTIIPPAALLVPLAGVGFAFLGLEQAVASFSAPMVGFLPITFMFLSWYANVRIGWENFKIPEVLQVILVGVVLGWITGLNNLSDVGDARDFVRW 682
            YGINT GAFAF FN+IY V+F  G GD  E F+K Y+++L  NF++G++S +LG+ G Q+L  +PPA LLVP+AG+G AFLGLE    S S P+VG+  + +++L WYA VRIG++NF++PE LQVI+VGVV+GWITGLN   DV  A   V+W
Sbjct:  128 YGINTPGAFAFVFNIIYNVFFTEGGGD--EAFVKGYKVSLAANFITGLISIVLGIFGMQILKFVPPAGLLVPIAGIGIAFLGLENIANSVSVPLVGYNAMLWVYLGWYAGVRIGYKNFRLPEALQVIIVGVVMGWITGLNKSEDVAKASKLVKW 279          
BLAST of mRNA_F-serratus_M_contig6456.17399.1 vs. uniprot
Match: A0A7S4EKF1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EKF1_9STRA)

HSP 1 Score: 177 bits (448), Expect = 5.710e-46
Identity = 82/154 (53.25%), Postives = 115/154 (74.68%), Query Frame = 2
Query:  224 YGINTAGAFAFAFNVIYPVYFA-GSGDSTENFLKAYRMALTGNFLSGVLSTILGVLGPQMLTIIPPAALLVPLAGVGFAFLGLEQAVASFSAPMVGFLPITFMFLSWYANVRIGWENFKIPEVLQVILVGVVLGWITGLNNLSDVGDARDFVRW 682
            YGINT GAFAF FN++Y V+F+ G GD+   F+K Y+++L  NF++G++S  LG+ G Q+L  +PPAALLVP+AG+G AFLGLE    S SAP+VG+  I +++L WYA VR+G++NF++PE LQVI+VGV++GW TGLN      +A   V+W
Sbjct:  131 YGINTPGAFAFVFNILYNVFFSEGGGDAA--FIKGYKVSLAANFITGLISIFLGMFGTQILKFVPPAALLVPIAGIGIAFLGLENIANSVSAPLVGYNAILWVYLGWYAGVRVGYKNFRLPEALQVIIVGVIMGWATGLNKSEATANASKLVKW 282          
BLAST of mRNA_F-serratus_M_contig6456.17399.1 vs. uniprot
Match: A0A1Z5K0X1_FISSO (Putative MFS transporter, AGZA family, xanthine/uracil permease n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0X1_FISSO)

HSP 1 Score: 173 bits (439), Expect = 2.220e-44
Identity = 83/156 (53.21%), Postives = 111/156 (71.15%), Query Frame = 2
Query:  224 YGINTAGAFAFAFNVIYPVYFA---GSGDSTENFLKAYRMALTGNFLSGVLSTILGVLGPQMLTIIPPAALLVPLAGVGFAFLGLEQAVASFSAPMVGFLPITFMFLSWYANVRIGWENFKIPEVLQVILVGVVLGWITGLNNLSDVGDARDFVRW 682
            YG+NT  AF+F FN++YPVYF+     G     F  AY +AL  NF++G++ST+L   GP +L  +PPAALLVP+AG+G AFLG+EQ   S +AP+VG+  I F FL WY+ VR+G+ N++ PE LQVI+VGV++GW TGLN  S V DA D V+W
Sbjct:  199 YGLNTPAAFSFVFNIMYPVYFSLVFTEGPEVA-FKTAYDVALAANFITGLISTVLAFFGPLILQYVPPAALLVPIAGIGIAFLGMEQVTNSIAAPLVGYPAILFAFLGWYSGVRLGYGNYRCPEALQVIMVGVIMGWSTGLNKKSTVEDAMDLVKW 353          
BLAST of mRNA_F-serratus_M_contig6456.17399.1 vs. uniprot
Match: A0A8J9TWT1_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TWT1_PHATR)

HSP 1 Score: 109 bits (273), Expect = 3.370e-25
Identity = 52/94 (55.32%), Postives = 72/94 (76.60%), Query Frame = 2
Query:  224 YGINTAGAFAFAFNVIYPVYFAG--SGDSTENFLKAYRMALTGNFLSGVLSTILGVLGPQMLTIIPPAALLVPLAGVGFAFLGLEQAVASFSAP 499
            YG+NT G FAF FN+IYPVYF    +   +E FL AY++A+  NF++G+LS + G++GP +L +IPPAALLVP+AG+GF+FLGLEQ   + +AP
Sbjct:   54 YGLNTVGIFAFIFNIIYPVYFTSVDAVGPSEAFLTAYKVAIAANFITGLLSVVFGIIGPTLLRMIPPAALLVPIAGIGFSFLGLEQLTTTLAAP 147          
BLAST of mRNA_F-serratus_M_contig6456.17399.1 vs. uniprot
Match: A0A6U0VLX7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0VLX7_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.610e-25
Identity = 60/147 (40.82%), Postives = 90/147 (61.22%), Query Frame = 2
Query:  224 YGINTAGAFAFAFNVIYPVYFAGSGDSTENFLKAYRMALTGNFLSGVLSTILGVLGPQMLTIIPPAALLVPLAGVGFAFLGLEQAVASFSAPMVGFLPITFMFLSWYANVRIGWENFKIPEVLQVILVGVVLGWITGLNNLSDVGDA 664
            YGINT GAFAF F+++YP Y++  G   E    A+R+A+  N L GVL+     +GP++  + PP AL+  LA VGFA+L L Q +  ++ P+ G LP+T +F +++  V+ G    K+P  +  +L+G  LGW T L+N   V DA
Sbjct:  106 YGINTPGAFAFMFSIVYPAYYSHDGTHEERAEFAWRVAVACNLLCGVLAMGFAFVGPKVRELTPPVALMTSLASVGFAYLLLNQLLDVYAEPIAGLLPLTIVFAAYFGKVKFG----KVPSAVIALLLGTALGWATRLSNPQMVEDA 248          
BLAST of mRNA_F-serratus_M_contig6456.17399.1 vs. uniprot
Match: A0A814EYH1_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A814EYH1_ADIRI)

HSP 1 Score: 101 bits (251), Expect = 1.700e-19
Identity = 56/152 (36.84%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  224 YGINTAGAFAFAFNVIYPVYFAGSGDSTENFLK-----AYRMALTGNFLSGVLSTILGVLGPQMLTIIPPAALLVPLAGVGFAFLGLEQAVASFSAPMVGFLPITFMFLSWYANVRIGWENFKIPEVLQVILVGVVLGWITGLNNLSDVGDA 664
            YGINT GAFAF F +I+PVY+    D+  +  +     A+  AL  NF++G++  +L ++G  +   IP  ALL  L+ VGF +L L Q +   ++P+V FLP   + + +++ ++IG      P  +  ++VG  LGW+T LN   DV DA
Sbjct:  133 YGINTPGAFAFVFGIIFPVYYTCIRDNNHSNQRVCQELAWYTALASNFITGLIILLLCIVGDFIRRNIPVLALLSSLSAVGFTYLALAQYLPIAASPIVSFLPFGIVMIGYFSGIKIG----PFPIAIVALVVGTALGWLTSLNKGQDVRDA 280          
BLAST of mRNA_F-serratus_M_contig6456.17399.1 vs. uniprot
Match: A0A818DA00_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818DA00_9BILA)

HSP 1 Score: 97.8 bits (242), Expect = 1.060e-18
Identity = 56/157 (35.67%), Postives = 84/157 (53.50%), Query Frame = 2
Query:  224 YGINTAGAFAFAFNVIYPVYFA-----GSGDSTENFLKAYRMALTGNFLSGVLSTILGVLGPQMLTIIPPAALLVPLAGVGFAFLGLEQAVASFSAPMVGFLPITFMFLSWYANVRIGWENFKIPEVLQVILVGVVLGWITGLNNLSDVGDARDFVR 679
            YGINT GAFAF F +I+PVY        S D       A  +AL  NF++G++  +L + G  +   IP  ALL  LA VGF +L L Q +   ++P+V FLP   + + +++ +++G      P     +++G  LGW T LN   DV +A   V+
Sbjct:  134 YGINTPGAFAFVFGIIFPVYNGCIRENNSSDKRSCQELALYVALASNFITGIIILLLCLFGEFIRRNIPGVALLSSLAAVGFTYLALNQYLPIAASPIVSFLPFAIVMIGYFSGIKVG----PFPIAFIALIIGTALGWATSLNKAEDVRNASLVVK 286          
BLAST of mRNA_F-serratus_M_contig6456.17399.1 vs. uniprot
Match: A0A815XK08_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815XK08_ADIRI)

HSP 1 Score: 98.6 bits (244), Expect = 1.350e-18
Identity = 55/157 (35.03%), Postives = 88/157 (56.05%), Query Frame = 2
Query:  224 YGINTAGAFAFAFNVIYPVYFA-----GSGDSTENFLKAYRMALTGNFLSGVLSTILGVLGPQMLTIIPPAALLVPLAGVGFAFLGLEQAVASFSAPMVGFLPITFMFLSWYANVRIGWENFKIPEVLQVILVGVVLGWITGLNNLSDVGDARDFVR 679
            YGINT GAFAF F++I+P YF+        D       A+ +A+  NFL+G++  IL + G  +    P  ALL  ++ +GF +L L + +   ++P+V FLP T + L ++ +V+ G     IP V   ++VG +  W T LN++S+V  A   V+
Sbjct:  150 YGINTPGAFAFIFSIIFPTYFSCLNRNNGRDKRSCEELAWYVAIASNFLTGIILLILCLFGEFIRKHTPGVALLSSISALGFTYLALNEYLQVAASPLVSFLPFTIVMLGYFGDVKFG----SIPIVFIALVVGTIFAWATSLNHVSNVRTAASIVK 302          
BLAST of mRNA_F-serratus_M_contig6456.17399.1 vs. uniprot
Match: A0A814BIB7_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814BIB7_9BILA)

HSP 1 Score: 98.6 bits (244), Expect = 1.400e-18
Identity = 52/154 (33.77%), Postives = 84/154 (54.55%), Query Frame = 2
Query:  224 YGINTAGAFAFAFNVIYPVYFAGSGDSTENFLK--AYRMALTGNFLSGVLSTILGVLGPQMLTIIPPAALLVPLAGVGFAFLGLEQAVASFSAPMVGFLPITFMFLSWYANVRIGWENFKIPEVLQVILVGVVLGWITGLNNLSDVGDARDFVR 679
            YGINT GAFAF F++I+P Y   +  ++  + +  A+ +AL  NF++G +  +L V+G  +    P  ALL  ++G+GF +L L + +     P+V F+P   + L ++ N++ G     IP     ++ G  LGW TG N    V DA   V+
Sbjct:  148 YGINTPGAFAFVFSIIFPTYHGCAQINSAAYCRELAWYVALASNFITGCILLLLCVVGEHIRRHTPAVALLSSISGIGFTYLALNEYIDVADVPIVAFIPFAIVMLGYFGNIKFG----PIPVAFVALVAGTALGWATGTNTRQPVIDASHLVK 297          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6456.17399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHI4_ECTSI5.600e-6564.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A448ZC90_9STRA1.130e-4755.84Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4EKF1_9STRA5.710e-4653.25Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1Z5K0X1_FISSO2.220e-4453.21Putative MFS transporter, AGZA family, xanthine/ur... [more]
A0A8J9TWT1_PHATR3.370e-2555.32Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A6U0VLX7_9STRA7.610e-2540.82Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A814EYH1_ADIRI1.700e-1936.84Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A818DA00_9BILA1.060e-1835.67Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A815XK08_ADIRI1.350e-1835.03Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
A0A814BIB7_9BILA1.400e-1833.77Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6456contigF-serratus_M_contig6456:9439..13750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.0
Seed ortholog evalue3.7e-57
Seed eggNOG ortholog2880.D8LHI4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.purine nucleobase transmembrane transporter activity
EggNOG OGs2QRYA@2759,COG2252@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1214
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6456.17399.1prot_F-serratus_M_contig6456.17399.1Fucus serratus malepolypeptideF-serratus_M_contig6456 9968..13641 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931993.2858777-UTR-F-serratus_M_contig6456:9438..99671622931993.2858777-UTR-F-serratus_M_contig6456:9438..9967Fucus serratus maleUTRF-serratus_M_contig6456 9439..9967 -
1690964093.0074809-UTR-F-serratus_M_contig6456:9438..99671690964093.0074809-UTR-F-serratus_M_contig6456:9438..9967Fucus serratus maleUTRF-serratus_M_contig6456 9439..9967 -
1622931993.3962092-UTR-F-serratus_M_contig6456:13641..137501622931993.3962092-UTR-F-serratus_M_contig6456:13641..13750Fucus serratus maleUTRF-serratus_M_contig6456 13642..13750 -
1690964093.0788605-UTR-F-serratus_M_contig6456:13641..137501690964093.0788605-UTR-F-serratus_M_contig6456:13641..13750Fucus serratus maleUTRF-serratus_M_contig6456 13642..13750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931993.2982347-CDS-F-serratus_M_contig6456:9967..100571622931993.2982347-CDS-F-serratus_M_contig6456:9967..10057Fucus serratus maleCDSF-serratus_M_contig6456 9968..10057 -
1690964093.0182323-CDS-F-serratus_M_contig6456:9967..100571690964093.0182323-CDS-F-serratus_M_contig6456:9967..10057Fucus serratus maleCDSF-serratus_M_contig6456 9968..10057 -
1622931993.3175697-CDS-F-serratus_M_contig6456:10408..104891622931993.3175697-CDS-F-serratus_M_contig6456:10408..10489Fucus serratus maleCDSF-serratus_M_contig6456 10409..10489 -
1690964093.027977-CDS-F-serratus_M_contig6456:10408..104891690964093.027977-CDS-F-serratus_M_contig6456:10408..10489Fucus serratus maleCDSF-serratus_M_contig6456 10409..10489 -
1622931993.3299508-CDS-F-serratus_M_contig6456:10916..111181622931993.3299508-CDS-F-serratus_M_contig6456:10916..11118Fucus serratus maleCDSF-serratus_M_contig6456 10917..11118 -
1690964093.037674-CDS-F-serratus_M_contig6456:10916..111181690964093.037674-CDS-F-serratus_M_contig6456:10916..11118Fucus serratus maleCDSF-serratus_M_contig6456 10917..11118 -
1622931993.3447258-CDS-F-serratus_M_contig6456:11322..114141622931993.3447258-CDS-F-serratus_M_contig6456:11322..11414Fucus serratus maleCDSF-serratus_M_contig6456 11323..11414 -
1690964093.0460405-CDS-F-serratus_M_contig6456:11322..114141690964093.0460405-CDS-F-serratus_M_contig6456:11322..11414Fucus serratus maleCDSF-serratus_M_contig6456 11323..11414 -
1622931993.3593905-CDS-F-serratus_M_contig6456:13006..130891622931993.3593905-CDS-F-serratus_M_contig6456:13006..13089Fucus serratus maleCDSF-serratus_M_contig6456 13007..13089 -
1690964093.0576134-CDS-F-serratus_M_contig6456:13006..130891690964093.0576134-CDS-F-serratus_M_contig6456:13006..13089Fucus serratus maleCDSF-serratus_M_contig6456 13007..13089 -
1622931993.379364-CDS-F-serratus_M_contig6456:13613..136411622931993.379364-CDS-F-serratus_M_contig6456:13613..13641Fucus serratus maleCDSF-serratus_M_contig6456 13614..13641 -
1690964093.0663102-CDS-F-serratus_M_contig6456:13613..136411690964093.0663102-CDS-F-serratus_M_contig6456:13613..13641Fucus serratus maleCDSF-serratus_M_contig6456 13614..13641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6456.17399.1

>prot_F-serratus_M_contig6456.17399.1 ID=prot_F-serratus_M_contig6456.17399.1|Name=mRNA_F-serratus_M_contig6456.17399.1|organism=Fucus serratus male|type=polypeptide|length=192bp
MIIGRRTSLGSERILLQQGAREEVRALFAMLKTMIVKSYGINTAGAFAFA
FNVIYPVYFAGSGDSTENFLKAYRMALTGNFLSGVLSTILGVLGPQMLTI
IPPAALLVPLAGVGFAFLGLEQAVASFSAPMVGFLPITFMFLSWYANVRI
GWENFKIPEVLQVILVGVVLGWITGLNNLSDVGDARDFVRW*
back to top

mRNA from alignment at F-serratus_M_contig6456:9439..13750-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6456.17399.1 ID=mRNA_F-serratus_M_contig6456.17399.1|Name=mRNA_F-serratus_M_contig6456.17399.1|organism=Fucus serratus male|type=mRNA|length=4312bp|location=Sequence derived from alignment at F-serratus_M_contig6456:9439..13750- (Fucus serratus male)
TACACACACAAAGCGTACCAGTCAGTCGTCGCGATTTGCTCAAAGCGTCC AACATTGCAACAAAACGGCGTATTGCTAATCTTCTCTGGCCAGCTCTATC TAGCAGATTATGATTATTGGGCGACGAACATCATTAGGTGAGGAGACGTC CCATATGTCTGCGAGTCCTGTTGCCGTGCGGCTCCCATGAACTTGGGGAA GAGGTGTCTTACGTTTAATTGTCAAGACATGCATCCAGACTTGATTGGAT CGAACAACATTCATTCGCGGGCTTCAAAGTGTACCGATTAACCAACTAGT CTACCACACGGTAATTTTTGTTTTGTTTCATGATCGATTTATTATTGGAG ACTCTGTCCTGTTCGATCTCTTGAACGGGGTGCTTCCACCCTGCCTACTG TCTGTGATCTTCTCGTTTTGTTGCTGCAGTAGTATTGGTAACACCAGCTG CCTACTGTTGTTCTGTTGGAAACGAGCAGAATTTGGGATCGTTGGAAACC AGAACTTTCCTTTGGTGCTTACTCAGGATGATTCACACCGACATGTAATA CTAATTTAGTGATGAATTGAAGCACCGCGGTATGTGCTCCGGATATGTAT CTAGAAAATACAACCGATGGAAATCTCCCCTTCGTCTCCTCGGCGTGCCT GGTAATACAAGGGTCCGAGCGCATTTTATTACAGCAAGGGGCGCGTGAGG AAGTCAGAGCCCTGTTTGCGATGCTGAAGACGATGATCGTGAAGGTGGGG ACCAGAAATCGTCATATATACTGTATTAATTTCTCATAATAGCTGTACAT TCATTTCTGCTACTAACTACAATAGTAGTATAGTGGCCATTCATTTCTTG TCTTGAAGATTTGACACGTACGTCCTCCCTCTTTTTCCCGACCTCACTAC GAAGCAGATAAGGGAGGGATTTCTCATTACAAGTAAATATAACATGTTTG CTAAAACATCTTTTCTTTTTTTTTCTTTTTTATGCCAAACTTGACTTTTC AGAGCGGAATTTTGTAAAACCTTGGCGGAATGAGAGTATATTCGGTGTAG TATGTATATGTTGTACGGTCAGCCCTTTCAGCAGAGTACTGATCAACCGG GCATGGTTGCCTATCCTACTCGTCGTGGTCAGCTGAGGACGAAAAAAATA TTCCATGCTCGGTCGCGCCTGATAATTTGGTCTCGCGAGACGACTGGCCG TCCAGCCTCATGTTAGCCCGCTCATTCTCCACATTCAAGCTGAATCCTCC TCGTAGTCAGCTGAACAGGGAAAACGCATTTTCTTCTGTCTTCGTCCACG CCTGAGAACTTGGTCTCGCATGACGGGTTCAGTCATCCTGTCCCGCGTCA GTCTGCTCGTTCTCCACACTCGGGCTGAATCTGGGGCTTACTCGAGGGGT TCCACCCGCTTTCAGCGACGGCGTCCAGCTATATACCGCCAACCGACATC GAGTCAATCTCGAGTTATTCAGGTCCCGCATTTGCGTACCAATTGTGTTT ACTGTCCGCCGGAACAGGGCCAGCAGTCCTCAAAATAGTTCCAGTAACGG GTGTTGCCTTAGCATCACCGGACCGGAGGACCACTTTTTGTCCGTCTCTA TTTCCACGTCCACTATTATATTGGTGCAGTGGACATGCGTATTACAGAAC GCATCGGAGGCAAATGTATCACGAGCCGTCGAGTTGGCCGAGTCTGACTG AAAACCCGACTTCAAGGTCGAGAATGAGGAAGCTCTATTGGAACGTGGAT ACAACTACATATTGTATAAGAGCTGTAAAATCACATTCACGATTATATCT TGAAGACATTTATTTCCCCTGCAGATAAGAGATGAGCCTTATTTGCGAGT TCAAGTCTCGTCAGGATGATTTATTTTGTTCAAGTTTACGTAGTGGAAGT CGCGAGTGGGAGAATAAACAAAGTTTTACCATTGACGAGGTGTAAAGATA ACGAGTGTATAGTATTAATACGTAGGAGTGCTGAATTTGCATTTCGCGAA AAAAATGGAGGCGTGAGCCGAGGAGAGATAACTACATCCTTATTAGTAGT AGTAGTAACACACATCAGGCGGAATGGTACTGCTCTGCAATAGGTGATAT TGGTAACCTAGCATGGTGGTTGAGCTCATCGGCAGAACTTGAGAACGAAT AAAACAAAACAAGCAGTACCGGCCGTAAGACCGCTCTCTGCCACTAATTT TAAGTTGTTTACACAACAACACTCACAGGCAATAACCATCATCGACGGCG AAAGGCCATGTCATTGCTCTTTGCGTGCAATCAGCCTGCTCGTCCCCCCT CTCAGATACGCCCATTCCTACCGCCACTGCCCACAGTCCTACGGCATCAA CACCGCTGGAGCTTTTGCGTTCGCCTTCAACGTCATATACCCCGTCTACT TTGCCGGTTCTGGCGATTCCACCGAGAAGTGAGTCGCGAGGGTACACTCA GTAGACACTATGCATTAGAACCTTGCAATAGCTTTACACAACCCGAGGAT ACCTCTGACCTGCAATGCAACATTCTGACCGACAGAGCTTGGTCTGCTCC CCCGGCTCGAGCGACGCTGCTTAGCGTTGTGTTATTCCTTTTTCCTCCTC TTCATGTGTTTGCTTTGTTTTTCTTCCCCCAGCTTCCTTAAGGCGTACAG AATGGCTCTCACGGGGAACTTCCTCTCTGGCGTCCTTTCGACCATCCTGG GGGTGCTGGGTCCACAGATGCTGACCATCATCCCTCCTGCTGCTCTCCTG GTACCCTTAGCGGGCGTTGGATTCGCGTTTCTCGGCCTCGAACAGGCTGT CGCGTCCTTCAGTGCTCCCATGGTTGGTTTCTTGGTGAGATGCTTCCGAC GTCGCTCTTTGCTGTACTGTAAAACTACTATAGTACCCTATTGCATTGCA TCTGGCGAGAAAGATAATATTTGGCCACTCAAGCAATAATGATTTAAGGC CACTCCAAACACACACACATATATATATATATATATTAACTGTATAATCT ATAGCTACGAAACCTACGGTAGCAGCGAGTTCTTCAAACATCCTTTGAAG TCGACATCAACGGACGATTGAGATGTTATCAAATGATTAGTTTGCGAGGT AGAGAAGGGGAAATACGCTACCGGCTGAGGGAGGGTAAGGTATCATAGAC GATTTTGTACTGTTGATTTTTCGTATGCCCCACCTCAGAGCACCCCCCAA CACATTAGCCCCCTATAACTCATTACATTTCATCCATAATATATCGATGC TTATTATGCAGCCCATCACCTTCATGTTCCTTAGCTGGTACGCGAACGTC CGCATCGGCTGGGAAAACTTCAAGATCCCGGAAGTCTTGCAGGTTTGACC TCGTGTTTTCCCCTGCGCTAATGCTGTGGGAGCAGGCGATTTAGCGTGGA CGGAATGGATGCTGGAGTTGGAATTAGAGGAGCGGAGGGTGGCCTCGCCG TGAACGTTTCGCTAAGGTCCCGATCAAACCCAGATGTAGCTTGCAGGGGT AGCTAAATCGCCGTGATCGAGTGAAATCGGCGTCATGGATGGTGCCGACA CACTTTCTTTGTTGTAAATGGGATAATAAGTCGGACTATTAACGGCAGAT GACTCCTATACCGTGAAGGAAATCTAAACGTTTACGTTTCCCCCTCTTGG CACTGTTTCCGGCGTTGAATGGTTTCTCGGTACTGTCCGGCAGGTCATCC TGGTGGGTGTAGTCTTGGGCTGGATCACGGGGTTGAACAATTTGTCAGAC GTGGGAGATGCCAGGGACTTTGTTAGATGGTGATAATAATTTCAGAGGCA GTCAAGCTGGAAGAGGGAGGTCGGGAATGGAGGAGTCGGTACAAACATCC AAAATACGGCTGAGTATTCATTCCAACCAATCAGGTCCAATGTAATGCGA TACATGTCCAGTTTTCAACCCAGACCACTCGTCATATTGTTGATAGCATC GAAGTGTAAAACAAACGACTGACGGAACTTTGGGCCTACCTGGACTGGCA AGGACATAGTTGAGAATTTGTACGACGCCAAGGACTACATACCCTAGGGA TCATCTTCCCCGTCGCTATCTTCACCGTGGGCATGTCACTCACGGCCCTC GACAGCGCCAAGACCGCAGGTACCGCCCGATTTATTCACCGCGTGGCCTT TAGTATATTCCTCCGCTGTCGCTGCCTTCCGCTCGCCCACTCCTTGTCAC CTGTTGGTCGCAGACCAAATAGAAACCACTTATTATTTCCAGCGGGAATT TACCTCCCACACTTTCTCAATGTAAAATTCCAGGCAATGTATACCCCACG AAGGGGACCTTG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6456:9439..13750-

>mRNA_F-serratus_M_contig6456.17399.1 ID=mRNA_F-serratus_M_contig6456.17399.1|Name=mRNA_F-serratus_M_contig6456.17399.1|organism=Fucus serratus male|type=CDS|length=1152bp|location=Sequence derived from alignment at F-serratus_M_contig6456:9439..13750- (Fucus serratus male)
ATGATTATTGGGCGACGAACATCATTAGATGATTATTGGGCGACGAACAT
CATTAGGGTCCGAGCGCATTTTATTACAGCAAGGGGCGCGTGAGGAAGTC
AGAGCCCTGTTTGCGATGCTGAAGACGATGATCGTGAAGGGTCCGAGCGC
ATTTTATTACAGCAAGGGGCGCGTGAGGAAGTCAGAGCCCTGTTTGCGAT
GCTGAAGACGATGATCGTGAAGTCCTACGGCATCAACACCGCTGGAGCTT
TTGCGTTCGCCTTCAACGTCATATACCCCGTCTACTTTGCCGGTTCTGGC
GATTCCACCGAGAATCCTACGGCATCAACACCGCTGGAGCTTTTGCGTTC
GCCTTCAACGTCATATACCCCGTCTACTTTGCCGGTTCTGGCGATTCCAC
CGAGAACTTCCTTAAGGCGTACAGAATGGCTCTCACGGGGAACTTCCTCT
CTGGCGTCCTTTCGACCATCCTGGGGGTGCTGGGTCCACAGATGCTGACC
ATCATCCCTCCTGCTGCTCTCCTGGTACCCTTAGCGGGCGTTGGATTCGC
GTTTCTCGGCCTCGAACAGGCTGTCGCGTCCTTCAGTGCTCCCATGGTTG
GTTTCTTGCTTCCTTAAGGCGTACAGAATGGCTCTCACGGGGAACTTCCT
CTCTGGCGTCCTTTCGACCATCCTGGGGGTGCTGGGTCCACAGATGCTGA
CCATCATCCCTCCTGCTGCTCTCCTGGTACCCTTAGCGGGCGTTGGATTC
GCGTTTCTCGGCCTCGAACAGGCTGTCGCGTCCTTCAGTGCTCCCATGGT
TGGTTTCTTGCCCATCACCTTCATGTTCCTTAGCTGGTACGCGAACGTCC
GCATCGGCTGGGAAAACTTCAAGATCCCGGAAGTCTTGCAGCCCATCACC
TTCATGTTCCTTAGCTGGTACGCGAACGTCCGCATCGGCTGGGAAAACTT
CAAGATCCCGGAAGTCTTGCAGGTCATCCTGGTGGGTGTAGTCTTGGGCT
GGATCACGGGGTTGAACAATTTGTCAGACGTGGGAGATGCCAGGGACTTT
GTTAGATGGTGAGTCATCCTGGTGGGTGTAGTCTTGGGCTGGATCACGGG
GTTGAACAATTTGTCAGACGTGGGAGATGCCAGGGACTTTGTTAGATGGT
GA
back to top