mRNA_F-serratus_M_contig6456.17398.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: D8LHI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI4_ECTSI) HSP 1 Score: 105 bits (261), Expect = 3.090e-24 Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 2
Query: 8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPFST-MFVEYPVHKMSGGETG*CFINGIAYVLLSSCFGLVAPIRSVVNK 301
LGI+FP+AI VG SL AL SAK AG+ YP +++ G+GTM+ SLFGSPF T M+ +P +K SG +TG ING+ Y+ LS FGLVA IRS+VN+
Sbjct: 265 LGIVFPIAISAVGTSLMALVSAKAAGDAYPVTESMVADGVGTMITSLFGSPFGTVMYFGHPAYKKSGAKTGYSLINGLLYLFLS-WFGLVALIRSIVNQ 362
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: A0A3C0EN88_9BACT (Permease n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A3C0EN88_9BACT) HSP 1 Score: 73.6 bits (179), Expect = 3.990e-13 Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 2
Query: 8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPF-STMFVEYPVHKMSGGETG*CFINGIAYVLLSSCF 265
+ IIFP+ +F + SL L+SA+ AG+VYPT+ +LLV G+G++V S+FGS F +T+++ +P K G G +NGIA + + CF
Sbjct: 250 MSIIFPMGLFNIIGSLQNLESAEAAGDVYPTRSSLLVNGLGSIVASMFGSCFPTTIYIGHPGWKAMGARAGYSILNGIA--ITAVCF 334
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: A0A2E2AWL4_9BACT (Permease n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2AWL4_9BACT) HSP 1 Score: 72.0 bits (175), Expect = 1.390e-12 Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = 2
Query: 8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPF-STMFVEYPVHKMSGGETG*CFINGIAYVLLSSCF 265
+ IIFP+ +F + SL L+SA+ AG+ +PT+ +LLV GIG+++ SLFGS F +T+++ +P K G G +NGIA ++ CF
Sbjct: 250 MSIIFPMGLFNIIGSLQNLESAEAAGDQFPTRSSLLVNGIGSIIASLFGSTFPTTIYIGHPGWKAMGARAGYSVLNGIAIAIV--CF 334
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: M6DE27_9LEPT (Putative membrane protein n=15 Tax=Leptospira TaxID=171 RepID=M6DE27_9LEPT) HSP 1 Score: 70.5 bits (171), Expect = 4.820e-12 Identity = 38/97 (39.18%), Postives = 66/97 (68.04%), Query Frame = 2
Query: 8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPF-STMFVEYPVHKMSGGETG*CFINGIAYVLLSSCFGLVAPIRSVV 295
L +I P+ IF V SL ++SA+ AG+ + T+ +L++ G+GT+V SLFGSPF +T+++ +P K G +G +NGI ++ L + FGLV+ + +++
Sbjct: 256 LSVILPMGIFNVIGSLQNIESAEAAGDKFNTRNSLMMNGVGTIVGSLFGSPFPTTIYIGHPGWKSLGARSGYSSLNGI-FMTLIAFFGLVSFVCALI 351
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: A0A5F1ZQN4_9LEPT (NCS2 family permease n=2 Tax=Leptospira TaxID=171 RepID=A0A5F1ZQN4_9LEPT) HSP 1 Score: 69.7 bits (169), Expect = 8.990e-12 Identity = 38/97 (39.18%), Postives = 62/97 (63.92%), Query Frame = 2
Query: 8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPF-STMFVEYPVHKMSGGETG*CFINGIAYVLLSSCFGLVAPIRSVV 295
L II P+ IF V SL ++SA+ AG+ + T+ +L+V G+GTMV SLFGSPF +T+++ +P K G G +NG+ ++ L + GL+ + ++
Sbjct: 256 LSIILPMGIFNVIGSLQNIESAEAAGDKFNTRNSLMVNGLGTMVGSLFGSPFPTTIYIGHPGWKALGARAGYSSLNGV-FMTLVAFLGLIGFVSKLI 351
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: A0A2P2E4K6_9LEPT (Permease transmembrane protein n=1 Tax=Leptospira ryugenii TaxID=1917863 RepID=A0A2P2E4K6_9LEPT) HSP 1 Score: 68.9 bits (167), Expect = 1.680e-11 Identity = 37/97 (38.14%), Postives = 65/97 (67.01%), Query Frame = 2
Query: 8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPF-STMFVEYPVHKMSGGETG*CFINGIAYVLLSSCFGLVAPIRSVV 295
L +I P+ IF V SL ++SA+ +G+ +PTK +LLV G+GT++ + FGSPF +T+++ +P K G + G +NGI ++ + FGL+ ++++V
Sbjct: 255 LAVILPMGIFNVIGSLQNIESAEASGDSFPTKTSLLVNGLGTIIGTFFGSPFPTTIYIGHPGWKGLGAKHGYSVLNGI-FMSIVCFFGLMGILQALV 350
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: A0A4V3JRW2_9LEPT (NCS2 family permease n=1 Tax=Leptospira ognonensis TaxID=2484945 RepID=A0A4V3JRW2_9LEPT) HSP 1 Score: 68.9 bits (167), Expect = 1.680e-11 Identity = 37/97 (38.14%), Postives = 64/97 (65.98%), Query Frame = 2
Query: 8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPF-STMFVEYPVHKMSGGETG*CFINGIAYVLLSSCFGLVAPIRSVV 295
L +I P+ IF V SL ++SA+ +G+ + TK +LL GIGT+V +LFGSPF +T+++ +P K G + G +NGI ++ + FGL+ +++++
Sbjct: 255 LAVILPMGIFNVIGSLQNIESAEASGDHFDTKSSLLANGIGTLVGTLFGSPFPTTIYIGHPGWKGLGAKHGYSVLNGI-FITIVCLFGLMGILQALI 350
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: A0A5F1YNZ9_9LEPT (NCS2 family permease n=4 Tax=Leptospira wolffii TaxID=409998 RepID=A0A5F1YNZ9_9LEPT) HSP 1 Score: 65.5 bits (158), Expect = 2.770e-10 Identity = 37/97 (38.14%), Postives = 61/97 (62.89%), Query Frame = 2
Query: 8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPF-STMFVEYPVHKMSGGETG*CFINGIAYVLLSSCFGLVAPIRSVV 295
L II P+ IF V SL ++SA+ AG+ + T+ +L+ G+GT+V SLFGSPF +T+++ +P K G +G +NGI ++ + GL+ + +V
Sbjct: 256 LSIILPMGIFNVIGSLQNIESAEAAGDKFNTRNSLMANGVGTIVGSLFGSPFPTTIYIGHPGWKALGARSGYSTLNGI-FMTAIAFLGLMGFVSKLV 351
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: A0A7C6TEG7_9CHLR (Xanthine permease n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C6TEG7_9CHLR) HSP 1 Score: 65.1 bits (157), Expect = 3.770e-10 Identity = 35/92 (38.04%), Postives = 58/92 (63.04%), Query Frame = 2
Query: 23 PVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPFSTM-FVEYPVHKMSGGETG*CFINGIAYVLLSSCFGLVAPIRSVV 295
P+AI+ SL ++SA+ AG+ Y T+ T+LV GIGT++ SLFGSPF T+ ++ +P K G G + +G+ +LL GL+ + +++
Sbjct: 258 PLAIYLFLESLNNVESAEAAGDSYSTRETMLVAGIGTLIGSLFGSPFPTLVYIGHPGWKSVGARVGYSWASGLV-ILLLGVLGLLPILLNII 348
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: Q7U3V7_PARMW (Uncharacterized protein n=1 Tax=Parasynechococcus marenigrum (strain WH8102) TaxID=84588 RepID=Q7U3V7_PARMW) HSP 1 Score: 65.1 bits (157), Expect = 3.770e-10 Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 2
Query: 8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPF-STMFVEYPVHKMSGGETG*CFINGIAYVL--LSSCFGLVAPIRSV 292
LG+I P+ +F + SL L+SA AG+ YPT+G+LLV G GT+ + GS F +T+++ +P K G + ++NG+ + L FG+V + V
Sbjct: 261 LGVIVPMGLFNLIGSLQNLESAAAAGDAYPTRGSLLVDGCGTLTAAALGSCFPTTLYIGHPGFKALGARSAYSWMNGVVMAVGCLFGLFGVVTVLIPV 358 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6456.17398.1 >prot_F-serratus_M_contig6456.17398.1 ID=prot_F-serratus_M_contig6456.17398.1|Name=mRNA_F-serratus_M_contig6456.17398.1|organism=Fucus serratus male|type=polypeptide|length=58bp MSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPFSTMFVEYPVHKback to top mRNA from alignment at F-serratus_M_contig6456:8941..9714- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6456.17398.1 ID=mRNA_F-serratus_M_contig6456.17398.1|Name=mRNA_F-serratus_M_contig6456.17398.1|organism=Fucus serratus male|type=mRNA|length=774bp|location=Sequence derived from alignment at F-serratus_M_contig6456:8941..9714- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6456:8941..9714- >mRNA_F-serratus_M_contig6456.17398.1 ID=mRNA_F-serratus_M_contig6456.17398.1|Name=mRNA_F-serratus_M_contig6456.17398.1|organism=Fucus serratus male|type=CDS|length=348bp|location=Sequence derived from alignment at F-serratus_M_contig6456:8941..9714- (Fucus serratus male)back to top |