mRNA_F-serratus_M_contig645.17388.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig645.17388.1
Unique NamemRNA_F-serratus_M_contig645.17388.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig645.17388.1 vs. uniprot
Match: D8LDK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK1_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 6.880e-28
Identity = 56/98 (57.14%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:    4 GLGHRKTEKLQYCRASRQIMFDFDTGRLPLALMWVLPEVKRHKGLVLTEIHDYRGFGHEEADPTVSTEM-SLIGDAANSKGSHHLPGLGQGPGQGDRY 294
            G GH+KT  LQYC ASRQIM D D GR PLALMW LPEV +  G V+ EIHD RG   +  +P+V T +    G+    KG+HH PGLGQGPGQG+R+
Sbjct:  184 GDGHKKTANLQYCFASRQIMLDLDNGRFPLALMWALPEVMQEAGTVIAEIHDLRGNALDAGNPSVGTTLLQPFGEGICPKGTHHPPGLGQGPGQGERF 281
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BLAST of mRNA_F-serratus_M_contig645.17388.1 vs. uniprot
Match: A0A6H5KXS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS5_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 2.420e-27
Identity = 55/98 (56.12%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:    4 GLGHRKTEKLQYCRASRQIMFDFDTGRLPLALMWVLPEVKRHKGLVLTEIHDYRGFGHEEADPTVSTEM-SLIGDAANSKGSHHLPGLGQGPGQGDRY 294
            G GH+KT  LQYC +SRQIM D D GR PLALMW LPEV +  G V+ EIHD RG   +  +P+V T +    G+    KG+HH PGLGQGPGQG+R+
Sbjct:  339 GDGHKKTGNLQYCFSSRQIMLDLDNGRFPLALMWALPEVMQEAGTVIAEIHDLRGNALDAGNPSVGTTLLQPFGEGICPKGTHHPPGLGQGPGQGERF 436
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig645.17388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDK1_ECTSI6.880e-2857.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXS5_9PHAE2.420e-2756.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig645contigF-serratus_M_contig645:276384..278323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size386
Cds size384
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig645.17388.1prot_F-serratus_M_contig645.17388.1Fucus serratus malepolypeptideF-serratus_M_contig645 276384..278323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931991.991919-CDS-F-serratus_M_contig645:276383..2764401622931991.991919-CDS-F-serratus_M_contig645:276383..276440Fucus serratus maleCDSF-serratus_M_contig645 276384..276440 +
1690964092.398597-CDS-F-serratus_M_contig645:276383..2764401690964092.398597-CDS-F-serratus_M_contig645:276383..276440Fucus serratus maleCDSF-serratus_M_contig645 276384..276440 +
1622931992.0109825-CDS-F-serratus_M_contig645:276818..2769171622931992.0109825-CDS-F-serratus_M_contig645:276818..276917Fucus serratus maleCDSF-serratus_M_contig645 276819..276917 +
1690964092.4094431-CDS-F-serratus_M_contig645:276818..2769171690964092.4094431-CDS-F-serratus_M_contig645:276818..276917Fucus serratus maleCDSF-serratus_M_contig645 276819..276917 +
1622931992.0338995-CDS-F-serratus_M_contig645:278095..2783231622931992.0338995-CDS-F-serratus_M_contig645:278095..278323Fucus serratus maleCDSF-serratus_M_contig645 278096..278323 +
1690964092.4195974-CDS-F-serratus_M_contig645:278095..2783231690964092.4195974-CDS-F-serratus_M_contig645:278095..278323Fucus serratus maleCDSF-serratus_M_contig645 278096..278323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig645.17388.1

>prot_F-serratus_M_contig645.17388.1 ID=prot_F-serratus_M_contig645.17388.1|Name=mRNA_F-serratus_M_contig645.17388.1|organism=Fucus serratus male|type=polypeptide|length=128bp
PGLGHRKTEKLQYCRASRQIMFDFDTGRLPLALMWVLPEVKRHKGLVLTE
IHDYRGFGHEEADPTVSTEMSLIGDAANSKGSHHLPGLGQGPGQGDRYSG
ILVDPPSKANASSSSGQAAGRGSALSGG
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mRNA from alignment at F-serratus_M_contig645:276384..278323+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig645.17388.1 ID=mRNA_F-serratus_M_contig645.17388.1|Name=mRNA_F-serratus_M_contig645.17388.1|organism=Fucus serratus male|type=mRNA|length=1940bp|location=Sequence derived from alignment at F-serratus_M_contig645:276384..278323+ (Fucus serratus male)
CCAGGACTAGGACACAGGAAGACGGAAAAACTGCAATACTGTCGAGCCTC
TCGCCAGGTGAGGGCGAGGGGGGGCGCGCGCGTCCACCTATCAGGGTTGG
CGCGCTGGGTCGCCGAATCGTGAGCAGCTTCCGGGTTCCTCATCACTATT
TTCCATTCCATAGTCGAAATATAAGTGCTGGATTGATGTTTGTTGGGGTT
CGAAGTTGCTGCAGACGACTGGAAACGTAAGCACCCAATACCCTCTCCAG
AGGGATGATGACCAAAAAGTGTCAAAACTCCTACCAGGTAGAGGTTTTCA
GTGACAGTGGCGTTTCTTGGCCTGGTTGTATCCCGTCCCGTGACTTCGTT
TTCCCCTTCGACTTCGAGTGAATCTGTCCCATCGCGACCTTGAAAACATT
TGCCTGTTGTTTCACGGCGAACATATAAATTCAAGATCATGTTCGATTTC
GACACGGGAAGGCTCCCGCTGGCGCTCATGTGGGTCCTGCCTGAGGTGAA
GCGGCACAAAGGCCTCGTCTTGACGGAGATCCACGTAAGTTTTCTGCTTA
TCTCCGGGAGGCGTTTGTGCAGAGAGAGGGGGGCGGGGGCGGATAATATA
GTAGTATTTGTAGGATGAATGGTGATTTGCTGGGGAATAAAAATTTAGAA
GTGGTGAGAGTCACGTATTTTTTTGGCAAACAACAGAAAAGCGACACCTC
TGTTAAAAAAATAACGTTTGACCTCGAAGCAAGCAAAAGAAGCGTCAAGA
AATTGCGCGTTGATTGACGTTCAGCGCGCTGTCGTTGTTAAAAAAGAAAT
CAAATCGCCAGAATGGATTGCCAAGATAGCGCGGGCTAGTCTCGCCGGAC
CACCTCAGTATCCTGATTCTCACGCACTGAGGATCACGCGGGGGGCTCCA
ATACCTAGGGCCCCCGATATTTTGTCCCTGTTTGGGCGGTCTGATTCTGC
TGTTTCTGTTTTTTGCTTGGTTGTTTTAGGTGTGTGGTTCTCTTGGGTCT
CCAAAAATCGTAGAATTCGAGGAGCACGGCCTGTTTATTTTTTCGTTGAG
GTGGGGGGGGGGGGGGATAAAATCCCCGTGCTTCCTTTTTAGCAGCATGT
CATCGCCGGCCCAGTCGCGTCGTAGGTGGTTCGTCGAGGTGTTCAAATTT
TGAATGGAAGTTGATACCGGACCCCATTGCTCTCGAAAGGGTCGACCCGT
GCACGCTCTCCAGATTGAGGTGCAAGCCCAAGCCTTGATCAGCCTTGACG
TTGCTGCGGTATGTCTCTGTCGCTCCGCTGGACCCGCGTCGTTACCGAAG
CGCGCTTTGCAGCCTTCCCCCCGCCTCCAGCCCCCGTATTTTCGCTACGA
ACTCCCCCACGTACCCTTCTACCGTAGTGTGATTACTACAGACAGGGGAT
CTGTCCCCTTTTTTTCAATCATTTAGTGCCAGGTAATCTTGTATCTGAAA
TGAAGAGTATTTTACAACCCCGGGGGGGAAATAATATGCCGCAACCCCCT
TGTCCCCGAACCCCCGCCCCCCCCCCCCCCCAATGAAATTCAGCACAATT
TTTTTTTTTTAAAAAAAGCCTACCATTTTTCTTGTGCAGCCTCGACTTTA
TCGGGGTAAATGGATGTCTTTAATCTCGCCACGTGTAGGTAAATTAGGAT
TTGACCAAGTTAAGATTTGACCACCGCACCTCCATGTCCCGCCACGACTC
CCATCTCTCCAGGACTATCGCGGCTTCGGACACGAGGAAGCAGATCCCAC
TGTGTCCACCGAAATGTCTCTGATCGGCGACGCAGCCAACTCCAAGGGTT
CCCACCACCTCCCCGGCCTTGGACAGGGACCCGGTCAAGGGGACCGCTAC
TCGGGCATTCTTGTCGATCCCCCCTCAAAGGCAAACGCCTCTTCTTCCAG
CGGTCAAGCCGCCGGCAGGGGTAGTGCTTTGAGTGGCGGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig645:276384..278323+

>mRNA_F-serratus_M_contig645.17388.1 ID=mRNA_F-serratus_M_contig645.17388.1|Name=mRNA_F-serratus_M_contig645.17388.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig645:276384..278323+ (Fucus serratus male)
CCAGGACTAGGACACAGGAAGACGGAAAAACTGCAATACTGTCGAGCCTC
TCGCCAGCCAGGACTAGGACACAGGAAGACGGAAAAACTGCAATACTGTC
GAGCCTCTCGCCAGATCATGTTCGATTTCGACACGGGAAGGCTCCCGCTG
GCGCTCATGTGGGTCCTGCCTGAGGTGAAGCGGCACAAAGGCCTCGTCTT
GACGGAGATCCACATCATGTTCGATTTCGACACGGGAAGGCTCCCGCTGG
CGCTCATGTGGGTCCTGCCTGAGGTGAAGCGGCACAAAGGCCTCGTCTTG
ACGGAGATCCACGACTATCGCGGCTTCGGACACGAGGAAGCAGATCCCAC
TGTGTCCACCGAAATGTCTCTGATCGGCGACGCAGCCAACTCCAAGGGTT
CCCACCACCTCCCCGGCCTTGGACAGGGACCCGGTCAAGGGGACCGCTAC
TCGGGCATTCTTGTCGATCCCCCCTCAAAGGCAAACGCCTCTTCTTCCAG
CGGTCAAGCCGCCGGCAGGGGTAGTGCTTTGAGTGGCGGTGACTATCGCG
GCTTCGGACACGAGGAAGCAGATCCCACTGTGTCCACCGAAATGTCTCTG
ATCGGCGACGCAGCCAACTCCAAGGGTTCCCACCACCTCCCCGGCCTTGG
ACAGGGACCCGGTCAAGGGGACCGCTACTCGGGCATTCTTGTCGATCCCC
CCTCAAAGGCAAACGCCTCTTCTTCCAGCGGTCAAGCCGCCGGCAGGGGT
AGTGCTTTGAGTGGCGGT
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