mRNA_F-serratus_M_contig645.17391.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig645.17391.1
Unique NamemRNA_F-serratus_M_contig645.17391.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig645.17391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig645contigF-serratus_M_contig645:289999..290517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size521
Cds size495
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931991.5989764-UTR-F-serratus_M_contig645:289998..2900221622931991.5989764-UTR-F-serratus_M_contig645:289998..290022Fucus serratus maleUTRF-serratus_M_contig645 289999..290022 +
1690964092.2739286-UTR-F-serratus_M_contig645:289998..2900221690964092.2739286-UTR-F-serratus_M_contig645:289998..290022Fucus serratus maleUTRF-serratus_M_contig645 289999..290022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931991.6214402-CDS-F-serratus_M_contig645:290022..2905171622931991.6214402-CDS-F-serratus_M_contig645:290022..290517Fucus serratus maleCDSF-serratus_M_contig645 290023..290517 +
1690964092.284237-CDS-F-serratus_M_contig645:290022..2905171690964092.284237-CDS-F-serratus_M_contig645:290022..290517Fucus serratus maleCDSF-serratus_M_contig645 290023..290517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig645.17391.1prot_F-serratus_M_contig645.17391.1Fucus serratus malepolypeptideF-serratus_M_contig645 290023..290517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig645.17391.1

>prot_F-serratus_M_contig645.17391.1 ID=prot_F-serratus_M_contig645.17391.1|Name=mRNA_F-serratus_M_contig645.17391.1|organism=Fucus serratus male|type=polypeptide|length=165bp
MQQKRILLRHQQVQQQQQQQQQQKVQKIEASGVPSRPGAYAASRGRATSN
SPQVPSNSSSGLPQLLNGVGVGSSTGMRRQSSTSRSQLRRNAHHQQAQHQ
SPSLVSLQTKSSVTSPMPAPLSYQTQSPSHIPSPSHTPSPSRPPSRQQVA
PPATAPLPNDRLLFP
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mRNA from alignment at F-serratus_M_contig645:289999..290517+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig645.17391.1 ID=mRNA_F-serratus_M_contig645.17391.1|Name=mRNA_F-serratus_M_contig645.17391.1|organism=Fucus serratus male|type=mRNA|length=519bp|location=Sequence derived from alignment at F-serratus_M_contig645:289999..290517+ (Fucus serratus male)
AAGAAACTGGAGGAGCAGGAGGAAATGCAGCAAAAACGAATCCTGTTGCG
GCATCAGCAAGTCCAACAGCAACAGCAACAGCAACAGCAACAAAAGGTAC
AGAAAATCGAGGCTTCTGGAGTACCCTCGAGGCCTGGTGCTTACGCTGCC
AGTAGGGGACGTGCGACGAGCAATTCCCCCCAGGTCCCGTCAAATTCGAG
TTCCGGTCTCCCCCAATTGTTGAACGGTGTTGGGGTCGGCAGCAGCACCG
GAATGCGGCGCCAGTCCTCCACCAGCCGCTCGCAACTCCGTCGGAACGCG
CACCACCAGCAAGCGCAGCACCAGAGCCCGTCGCTCGTGTCTCTGCAGAC
GAAGTCATCGGTGACGTCGCCGATGCCAGCCCCGCTGTCCTACCAGACCC
AATCTCCTTCTCATATACCGTCGCCCTCTCACACTCCGTCTCCGTCTCGA
CCGCCATCGCGTCAACAAGTAGCACCACCAGCTACGGCGCCCCTGCCCAA
TGACCGATTGCTCTTCCCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig645:289999..290517+

>mRNA_F-serratus_M_contig645.17391.1 ID=mRNA_F-serratus_M_contig645.17391.1|Name=mRNA_F-serratus_M_contig645.17391.1|organism=Fucus serratus male|type=CDS|length=990bp|location=Sequence derived from alignment at F-serratus_M_contig645:289999..290517+ (Fucus serratus male)
ATGCAGCAAAAACGAATCCTGTTGCGGCATCAGCAAGTCCAACAGCAACA
GCAACAGCAACAGCAACAAAAGGTACAGAAAATCGAGGCTTCTGGAGTAC
CCTCGAGGCCTGGTGCTTACGCTGCCAGTAGGGGACGTGCGACGAGCAAT
TCCCCCCAGGTCCCGTCAAATTCGAGTTCCGGTCTCCCCCAATTGTTGAA
CGGTGTTGGGGTCGGCAGCAGCACCGGAATGCGGCGCCAGTCCTCCACCA
GCCGCTCGCAACTCCGTCGGAACGCGCACCACCAGCAAGCGCAGCACCAG
AGCCCGTCGCTCGTGTCTCTGCAGACGAAGTCATCGGTGACGTCGCCGAT
GCCAGCCCCGCTGTCCTACCAGACCCAATCTCCTTCTCATATACCGTCGC
CCTCTCACACTCCGTCTCCGTCTCGACCGCCATCGCGTCAACAAGTAGCA
CCACCAGCTACGGCGCCCCTGCCCAATGACCGATTGCTCTTCCCTATGCA
GCAAAAACGAATCCTGTTGCGGCATCAGCAAGTCCAACAGCAACAGCAAC
AGCAACAGCAACAAAAGGTACAGAAAATCGAGGCTTCTGGAGTACCCTCG
AGGCCTGGTGCTTACGCTGCCAGTAGGGGACGTGCGACGAGCAATTCCCC
CCAGGTCCCGTCAAATTCGAGTTCCGGTCTCCCCCAATTGTTGAACGGTG
TTGGGGTCGGCAGCAGCACCGGAATGCGGCGCCAGTCCTCCACCAGCCGC
TCGCAACTCCGTCGGAACGCGCACCACCAGCAAGCGCAGCACCAGAGCCC
GTCGCTCGTGTCTCTGCAGACGAAGTCATCGGTGACGTCGCCGATGCCAG
CCCCGCTGTCCTACCAGACCCAATCTCCTTCTCATATACCGTCGCCCTCT
CACACTCCGTCTCCGTCTCGACCGCCATCGCGTCAACAAGTAGCACCACC
AGCTACGGCGCCCCTGCCCAATGACCGATTGCTCTTCCCT
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