mRNA_F-serratus_M_contig645.17389.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig645.17389.1
Unique NamemRNA_F-serratus_M_contig645.17389.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig645.17389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig645contigF-serratus_M_contig645:278354..282779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size265
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931991.2260246-CDS-F-serratus_M_contig645:278353..2784581622931991.2260246-CDS-F-serratus_M_contig645:278353..278458Fucus serratus maleCDSF-serratus_M_contig645 278354..278458 +
1690964092.1752143-CDS-F-serratus_M_contig645:278353..2784581690964092.1752143-CDS-F-serratus_M_contig645:278353..278458Fucus serratus maleCDSF-serratus_M_contig645 278354..278458 +
1622931991.248843-CDS-F-serratus_M_contig645:282620..2827791622931991.248843-CDS-F-serratus_M_contig645:282620..282779Fucus serratus maleCDSF-serratus_M_contig645 282621..282779 +
1690964092.1863053-CDS-F-serratus_M_contig645:282620..2827791690964092.1863053-CDS-F-serratus_M_contig645:282620..282779Fucus serratus maleCDSF-serratus_M_contig645 282621..282779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig645.17389.1prot_F-serratus_M_contig645.17389.1Fucus serratus malepolypeptideF-serratus_M_contig645 278354..282779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig645.17389.1

>prot_F-serratus_M_contig645.17389.1 ID=prot_F-serratus_M_contig645.17389.1|Name=mRNA_F-serratus_M_contig645.17389.1|organism=Fucus serratus male|type=polypeptide|length=88bp
GRKKKDPRNGRAVMPPPGTVCLGKGKPRIKRIGLKVNRSALMNALRRDIV
AAPDGPSTKSVLSNVLSNEDPPTTKNLPSSTKNTPPTK
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mRNA from alignment at F-serratus_M_contig645:278354..282779+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig645.17389.1 ID=mRNA_F-serratus_M_contig645.17389.1|Name=mRNA_F-serratus_M_contig645.17389.1|organism=Fucus serratus male|type=mRNA|length=4426bp|location=Sequence derived from alignment at F-serratus_M_contig645:278354..282779+ (Fucus serratus male)
GGGAGGAAGAAAAAGGATCCCCGGAATGGTCGGGCCGTGATGCCGCCTCC
CGGAACAGTGTGCCTAGGGAAGGGAAAGCCTCGGATCAAGCGCATCGGGC
TCAAGGTAAGGGATCGTGAGGGAATGACAGGACTCGATGGTTTTCTGTTG
AGCGTAGGCGGATCACAAAACCGGATGCTCCCTTGAAAGCTTCAAGAAAA
AAGGAGCGAGAAAACTAGGGTGCTTGCGAATGAACATAAAACTTCTTGCG
TGTTAGCCGTTTGAGCTCACGGAACCGCTGATCGGAGTTCCTTGACTCCT
TTGATGATTTTATTGTTTTTCTCTTTTCGTTCAAGACAGTAACGCCTCTT
TCATTATATAACCGTTTCGGTACCGTGGAGTCGTTAGCACACATGAAAAT
ATAAAGTGACCGTGTTCGGCTGTGGCTCCATGATGTAGTCATGAATCAGG
GCTTTTCTTTTTGTGACTGCTCCGAATCCTCAAGAGCAGAAATGCATTGG
TTTACGAACAGAATTGTTGACCTCAAAGTGTACCTGAAAAGCACAAAACA
CTCAAACTACGTACTAGTGAAGGCGTACTGGGTCTACGGACAAGCCATCG
CGAAACCGAGGCATGTACTTGGTTGAGCGACGCTTCTGCCTTCTCATTGC
TCCAGACTATTAACTATTAGTACGAGCTGTTCGCTTCCCGGGCTTTGCTG
TAAGTTTGCTACTGATAGTGAGGCTCGAAGCATGAGCCTCTATAATATAA
ACAGCTTCCCGCCGTGGAAGAGGCGAGCGACTCTGATGGTCTCTCGTGGT
CTCAGCTTCATGCCCCTCGTGTATCTAGTGTTGTATAATACCGAAGCAAA
TGTTGTTGTTGACTGTCTTGTGCTTTCCTCCACGCCATGCTGCGCCGAAG
ATGATTCCCCCTTCCGCGGGGATGAATCAAGATTGAACGTTTCAAGGTTG
AACATTCACGTTTGGAGGCGTTTTTTGTCGTATCGTAATACTGCACTGTA
TTAGTAGTATTGAATTAGAGGCGCAACTACTGTACATATGTAATAATATT
AGTACACCCCTTCAAAATGTTAATTTAGGCGGGACGTTATCGGAGGAAGA
GCACAGAAGTACAGTATATCTTCGACTTATGCCCTCGTGCCCTCTCTCCC
TCCGAAGCCTGGTTTCGGGGTATGAGTGTGGGAGGGTCTTTCCGGCGGGT
GTAGGGTCGGACTCACCCTCAAGAGGTGCAGCCAACTGGCTGCCTCCGCG
ATTCAGCCTGTAGGTTGAGACGCGGCGGCGGTATGGTTGGCTGAAGATGA
TGGTGTTCCCAGGTGTGCGCCTCTTCCGAGCCTCAATTTGGTGGCTTTCG
GGAGGGTGGCGGCACGCGAGAGGCAGGGAGCACTGTCGCGGAGAGCCTGG
TAGTGCTCTACCGGGTGGGTACGCACCAGATTCGGCGAAGGCGGAGGGCA
GCTCGATCGTTGACGAGCCAGGGGAGGGCCGAACCCCTGTGCGCGAGAAT
CACAGACGTGAACCGGGAGGTTTCTTAGGAAAAGCTGACATCTGACCACA
CGCCCATTTGTCGTCCTACGAGGGCCGTAAGGAGCGGCGAACGGGCAAGA
TTCGTGGGACTTTTTTCAGGGATGCACAGGGCTTCGGACGGCTGGATACT
GGCTCGCGCGCCGGCCTCACCAGCTCAAGGCCTCCACCACCATGGACCTC
GGTAATTCAATTTTTCTTATTTCTGTAAGATTGCGTGGCCTTGAGAAACT
TGGAATTTTGTTGATCAAAACTGGTTGGAGCGTAATTCTTCCGGTTTTTT
GCTGAGAACGCTGGTCGTGGGTAGGCGATAACAATCCGAGTCGATCGAGG
TTGCTCTCGATATGGAGTAAGGATGTTTGATGAACCGTTTTGTTTGGTCG
GTGCCATTACTTGTAGAGTCGCATAACTTTTTGTCGCGATTTGGATCCCT
GTTGGTCTGAGTAGCGGGTTGTCACCATGATGTGCCCCGTTGACCTTTGT
ACCTCTTTGTGACCACGTACCGGATTGGCAACCGCGTACATTACTAGGTA
TGGTTGAGGCCCGATCGGTTAATGTGAAGAATACTACTACTACTACTACT
ACTACTACTTCTATGCCCTCCAAGTCAAAAATTCTTGGCGGAATCCCGAC
TGGGGGGGGGGGGGGGGGGGTCTATGCGAACCACGGGTGTGGACGAAAGT
TCTGACTGACTTTTCTCAAAACGCCCTAACAAAGGAAAGCGAGGGGGACA
ACTGTTGGTAAAGACAAAAAAGAACGCACCATAACTTCTCCTCATTTGTA
GACTTTTAGATGTACAGCCACCTAGAGTGTCGTCCGAGTGGTCTATTAAT
ATTAATAGTAGGTAAGGTAACCTGCACACCTGCTTTTTATATAATACCTG
GTAGTGCGGAAGTCGTGAGTTCGATTCCTGTCAAAGGAGGAATTCTATTC
TGACGTCCGGTACAATAGCGGAAAGCAGTAATACAGTACGTGAGTAGGAA
AATTCAACCATTTTGATTGGTTGATGAGTTGTAAGAGTGCTGAACTTGCG
TTGCGATAAAAAATGGTAAGGCGTGAACCGGGGAGAGATGGGAGGATCCT
TTGTGATCACAGTCAGGATGGCAACATTGGGGATCATCGGCTATACTATT
AATAAGTTAGATGAAAAAATAATATATAGTGGTATATATAGGCTACGGCA
GCGATGGCTCTTGAAATATTTATATACTTCGTATATATATAAAATGCGTA
ACGGGTTTCACTTGCATAATGCATTGCTAAAAAGGCCCCTCTTAATATTT
GAATAAGAAGGCAAAACCCTGCAGTTGAAGCAAAACTCCAAATATAGTTC
AAATTGATGGCCGTTGGATAATCAATGGGAATGGCTATTTACCCCACCGG
TGGGCCAAATAGCCATACCCATAATCAATAATATGAGAATCTACCCTAAG
TATTGCATGTAAATTCCATCTTACCATAAAATATTACTATTAATTATGTA
ATATTTTTCAAATCTTGAGACCAAGGAATATGAAAGTCAAAGGTACGAAA
TCCTTGAGTTAATTCAATAGGGTCACAAACAACTACTCTCTGATCTTCGT
CGTAACGTAACTCGAAATAACCGCTTGACGGAAAATCCTTTCTTAAAGGA
TGACCTTCAAAACCATAATCTGTATGGAGTCGTCGTAAATCAGGATGGCC
CGAAAAAATTACGCCAACTAAATCCCAAATTTCACGTTCCCACCAATTTC
CCATCCCATATATATGTATATATATATGCACAGTATATATTTTATAAATG
AAATATACTCGTGGCGTTACCCTGGGCTTTCGTTCTCCTCGTGGGTCGCG
ACAAATCCGAGGCTTGACAGCTGCTGTTATAACCATAACTTGTCTTGGCG
AGACATCCCTGAATCGCGAGTTGTCCACGCACTAGTATTATAAAACCGAC
TTGGCAAGAGTATTATGTTTTCCCTCTAATAGCGCTCATCTACCCGCACC
GGGTTCGAAGACGAAAGTATTAATAGTCGTCTCGCCGAGCATGCTGCTAC
GGTGCCCGTGATGCCTCCTGGCGAGGGAGTTCGAACTAAGCTCAACGGGT
ACCAAGCCGAGGTCCCACGTAAATTGTTAGGAGGTTCCAACACCCTTTAG
GCCGCTTCCTCGACGAAGACGACAACTGTTTCTGTTGCTTGGAACGATGC
TATGGGGTGTGCGGATCGTGCCAGGCCAGACTCTGAGTTGTGGCATGGCG
GGATCATTTTTGATTTTCACTTGGTTTTTAAGAACCGAACATGAGGGTCT
GACCCTCTCGAAACGCGAATCCATTTGGGTAGAGGTTACTTACCCGTCAG
GAGGGGGAGTTATACGACAAGCCCGTATCTTGTCGGGATTGAAAAATGTG
TGTGTGTGTCTGTGCGGCAGAGAATCTCTCGCCTCAGGCGTGTCGTGGTA
CGTGAGCGCAGCGGGTGAAAAGAGGTTTATTTTCCAAACGTGCTTTGTGT
TTCTGCGCGTGCGGGGACATAATGAACGGTGTCGTCTATCCTTGGGGTAT
CCGTGGTATCTGTGGTGACCCAAACGGATAGCACGGAGTACCGCGCAGAG
TGCGCACACGGGATGAAACGAGACGGTAGCAAATCCCTAGGCAGGAGAAG
AGCGACGATCTGAAACCGGCACGCTGGGGGCATTGCGACATGCCAAGCTG
CGGCGGCGGCCGTCGGCTTTTGTAGCTTGCGTCCATTCTTCTCCCCTGCT
TCTGCCTCTTGCCCCAGGTGAATCGAAGCGCTCTCATGAACGCGCTGCGG
CGAGATATTGTGGCCGCTCCGGACGGGCCATCCACCAAGAGCGTGCTATC
GAACGTGCTATCGAACGAGGACCCACCAACTACCAAGAATTTGCCATCTT
CTACCAAAAACACTCCACCTACTAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig645:278354..282779+

>mRNA_F-serratus_M_contig645.17389.1 ID=mRNA_F-serratus_M_contig645.17389.1|Name=mRNA_F-serratus_M_contig645.17389.1|organism=Fucus serratus male|type=CDS|length=528bp|location=Sequence derived from alignment at F-serratus_M_contig645:278354..282779+ (Fucus serratus male)
GGGAGGAAGAAAAAGGATCCCCGGAATGGTCGGGCCGTGATGCCGCCTCC
CGGAACAGTGTGCCTAGGGAAGGGAAAGCCTCGGATCAAGCGCATCGGGC
TCAAGGGGAGGAAGAAAAAGGATCCCCGGAATGGTCGGGCCGTGATGCCG
CCTCCCGGAACAGTGTGCCTAGGGAAGGGAAAGCCTCGGATCAAGCGCAT
CGGGCTCAAGGTGAATCGAAGCGCTCTCATGAACGCGCTGCGGCGAGATA
TTGTGGCCGCTCCGGACGGGCCATCCACCAAGAGCGTGCTATCGAACGTG
CTATCGAACGAGGACCCACCAACTACCAAGAATTTGCCATCTTCTACCAA
AAACACTCCACCTACTAAGGTGAATCGAAGCGCTCTCATGAACGCGCTGC
GGCGAGATATTGTGGCCGCTCCGGACGGGCCATCCACCAAGAGCGTGCTA
TCGAACGTGCTATCGAACGAGGACCCACCAACTACCAAGAATTTGCCATC
TTCTACCAAAAACACTCCACCTACTAAG
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