mRNA_F-serratus_M_contig645.17387.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig645.17387.1
Unique NamemRNA_F-serratus_M_contig645.17387.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig645.17387.1 vs. uniprot
Match: A0A6H5KXS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS5_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.100e-13
Identity = 67/193 (34.72%), Postives = 93/193 (48.19%), Query Frame = 2 
Query:   68 FTEEADARVAQQTFVVGPIPRFTALYFEEEMSEDGAGPSPGAPGDR-SVDGVGPEDRASLGLQAGKPAS----------PSNGYRRDPFL-LASATPPEKPLSREET--SEH--------------------VEDARRIARQQRAAYQKTLDKMEPKWFTAPRGSPR-PTKEKTPPLLVELYPTYWRVRTVST 541
            +T  A  +VA  +FV+GPI RFTALYF+EE+    A  S G   +  S  G+    R  +   AG  +           P++G  RD      + TP   PLSR E   S H                    V+  R+   +QR A Q+ L  +EP  F   +G+P+ P KEK PPL+++L PT WR+RT+ST
Sbjct:  142 YTRHAPMKVAS-SFVMGPISRFTALYFDEEIDPGAADSSSGGDDEHASFSGLSSGGRRGIADAAGNESETVSPPVFGGGPADGRGRDLCSGSGTGTPKSDPLSRCELPPSRHHHKRARLQRRIDCQADLLEVVKATRQAVGEQREADQEALAGVEPACFMNAKGTPKTPKKEKKPPLVIDLLPTCWRIRTIST 333
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BLAST of mRNA_F-serratus_M_contig645.17387.1 vs. uniprot
Match: D8LDK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK1_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.740e-10
Identity = 64/181 (35.36%), Postives = 86/181 (47.51%), Query Frame = 2 
Query:  113 VGPIPRFTALYFEEEMS-EDGAGPSPGAPGDRSVDGVGPEDRASLGLQAGKPAS----------PSNGYRRDPFLLASA----TPPEKPLSREETS----------------------EHVEDARRIARQQRAAYQKTLDKMEPKWFTAPRGSPR-PTKEKTPPLLVELYPTYWRVRTVST 541
            +GPI RFTALYF+EE+  ED    S G  G  S  G+    R ++   AG  +           P++G  R    L+SA    TP    L R E S                      E V+  R+   +QR A Q+ L  +EP  F   +G+P+ P KEK PPL++EL PT WR+RT+ST
Sbjct:    1 MGPISRFTALYFDEEIDPEDADSSSGGDNGHASFSGLSGGGRRAITDAAGNDSETVSPPVCGGGPADGRGRG---LSSASGTGTPKSDRLGRYELSPSRHHHKRARLRRRIDHEADLLEVVKVTRQAVGEQREADQEALAGVEPACFMNAKGTPKTPKKEKRPPLVIELLPTCWRIRTIST 178
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig645.17387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXS5_9PHAE2.100e-1334.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDK1_ECTSI1.740e-1035.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig645contigF-serratus_M_contig645:272738..276375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size546
Cds size543
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig645.17387.1prot_F-serratus_M_contig645.17387.1Fucus serratus malepolypeptideF-serratus_M_contig645 272738..276373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931991.1110554-CDS-F-serratus_M_contig645:272737..2731461622931991.1110554-CDS-F-serratus_M_contig645:272737..273146Fucus serratus maleCDSF-serratus_M_contig645 272738..273146 +
1690964092.1256526-CDS-F-serratus_M_contig645:272737..2731461690964092.1256526-CDS-F-serratus_M_contig645:272737..273146Fucus serratus maleCDSF-serratus_M_contig645 272738..273146 +
1622931991.1361587-CDS-F-serratus_M_contig645:275574..2756401622931991.1361587-CDS-F-serratus_M_contig645:275574..275640Fucus serratus maleCDSF-serratus_M_contig645 275575..275640 +
1690964092.1467912-CDS-F-serratus_M_contig645:275574..2756401690964092.1467912-CDS-F-serratus_M_contig645:275574..275640Fucus serratus maleCDSF-serratus_M_contig645 275575..275640 +
1622931991.1689901-CDS-F-serratus_M_contig645:276305..2763731622931991.1689901-CDS-F-serratus_M_contig645:276305..276373Fucus serratus maleCDSF-serratus_M_contig645 276306..276373 +
1690964092.1597736-CDS-F-serratus_M_contig645:276305..2763731690964092.1597736-CDS-F-serratus_M_contig645:276305..276373Fucus serratus maleCDSF-serratus_M_contig645 276306..276373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig645.17387.1

>prot_F-serratus_M_contig645.17387.1 ID=prot_F-serratus_M_contig645.17387.1|Name=mRNA_F-serratus_M_contig645.17387.1|organism=Fucus serratus male|type=polypeptide|length=181bp
RGRRDFGRGRNGDGGGGGRFGRIYGRGGCSRGAADVCSRAHTAVHGLVFR
GRNVRGRCWTFSRCAGGPLGRWRRSRGSRKPWVASGEARLSQQWIPSRSV
SPCLGNASGEAPEPGGDFGARGGRPAHRSSAEGCVPENARQDGAEVVHRP
KGEPEANKGKNASPFSGTLSHLLARAHGFNG
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mRNA from alignment at F-serratus_M_contig645:272738..276375+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig645.17387.1 ID=mRNA_F-serratus_M_contig645.17387.1|Name=mRNA_F-serratus_M_contig645.17387.1|organism=Fucus serratus male|type=mRNA|length=3638bp|location=Sequence derived from alignment at F-serratus_M_contig645:272738..276375+ (Fucus serratus male)
AGGGGAAGACGAGACTTTGGTCGCGGGAGAAATGGAGACGGCGGCGGGGG
AGGGCGATTCGGTAGGATTTACGGAAGAGGCGGATGCTCGCGTGGCGCAG
CAGACGTTTGTAGTAGGGCCCATACCGCGGTTCACGGCCTTGTATTTCGA
GGAAGAAATGTCAGAGGACGGTGCTGGACCTTCTCCCGGTGCGCCGGGGG
ACCGCTCGGTCGATGGCGTCGGTCCCGAGGATCGCGCAAGCCTTGGGTTG
CAAGCGGGGAAGCCCGCCTCTCCCAGCAATGGATACCGTCGCGATCCGTT
TCTCCTTGCCTCGGCAACGCCTCCGGAGAAGCCCCTGAGCCGGGAGGAGA
CTTCGGAGCACGTGGAGGACGCCCGGCGCATCGCTCGTCAGCAGAGGGCT
GCGTACCAGGTGAATAAATGGCTTGGTCTCGGGGGAACTTTTCGAACATT
TTTTTTTCAAGGTTGAAGAGCCTAAAGGGGCAAAGCTGGGCCGTTCGCGG
AATTGTATGGGGTTTTACGATCGTTTTTTTCTTCTTCCTTTTCTTATCGG
TATGGGATTTTTTATTTTTTTAAATTGCTTGGGTGTTGTAAAAACATGGC
GGTACGTTCGTTAAAAGAAAATTCAGAACGCGCCTAGACCCTCTGAGCAT
CCCCCAGTCAGGGGGGGAAAGATGTCAAAACGTTTATGGTAGGTGGGATC
AAAGGCTGCAAATATTGTTGTTGTTGTTTATATCACATTAACTGATCCTC
TACGAATCCAGCCGTGGTCACAAGATACAGTAGACGGAACCAAACCAGAT
CAAACCAGTAATACGTTCGAAGGTAAGCAGGGAAAGAAAGCAGACAGAAG
AGAACGGACAAGAAAGTAGCCAGCAATACAAAACCTCTTGCTGGCATTTA
TACAAGCTACCCGATGGTATTAGCATTGGGTCAACAGTATAATGTCAGGG
AGAAGCCCACCATTGTACTGTACACCTTGATGCCCTTTACCATATAGTGG
GAAGTTTCGTTCGGTGCTTTATACTTTATACGCCGCCGCGGAACTCGGGA
GGAATTGCGTAAGTAAGCACCAGGTTCAGCCTGAGTATGGAGATGAGCAG
GCTGACGCGGGACGGGACTGCCGAACCCGTCTCGCAAGACCAAATTTTCA
GGCGCAAATGGGGACAGGAAAGTATTCATTTTCCCTGTTCAGCTGACCAC
GAGCACGATCAGCAATCTTACCCAGTTGATCCTTACCCTTGCTGCATGTG
ATGACTATACATACTTCAAGTATAGTAGTCGGAGGAATCGAGAAATGGCC
GGGGGAAGAAGAGACTTATTATTAATGGCACAATAGATCATAAGGCGAGA
ACCAGGGAGAGATGGGAAAATCCTTCGTGGCCACAGGCATCAACAGGATG
GATGATGGCAACGCTGCAGAAGTTGGGATTGGTAACCAAGCACGTTGAGG
CCCATCGGCCGTAAGTGAGATACTACAACGAATACAAGTCACTTACTGCA
CAACTTTGGTTGATCTAAGACTGATAGACATCAAGTTGACGCATTCGATT
AAAAACAAGGAACGCGGCAAGGGAAGGTTACTTTGGTGCCCGTGACTCCC
AGAGTGCAATTGTCTTGTCGGTAGATAGGTTAGGTACGACAGCAATCAAA
ACCTACCGCAATTTCCGTGTATAATATACCTGGTATAATATATAATATAT
ACTATATGGTATTTAGATATCCTGGCGGTGGGTGAATCGAATCGAATCGA
ATCGAGGAGAGATCGTGCACACCTTTAGTAACCACGCGCAAGATTCGCCT
CAGAGTGTCGTACCGTTGCTGCTGCTGCAGAATCTAACCAAAGCGCTATG
ATACTGTAAATGTGACAAGACAAGAACAGGAACAAGTTCTATAGGTACTG
CAGTAATATCGGCCTTTGTCTCCGTCATCTACTTAACATTGTACTTGTTA
TTAATGACACAACAGATGCAAAACTCAACCCTTTTGTTTGACTCCTAAGG
AGTGCGTCGATGTGTGTCCCCTGTCCCCGCGCCCGTGACAAGCCTAAACT
TTGTTGGAAAACGGCGGCGAGATAAGTAACTCTCCCCCTGGTGTTCTACC
TTACCTGGTAACTCGTTCTATCATACTGGTACATTTTTTTCTGTAATATA
ATATACAAAGTAGCGAATAATGATATGTGGAAAAACGGGAAAATCGCATG
AAAACGAAGGCGAGACCGAACTAAACTTCAAAAAGTACGTACCGGTACCA
TGAGCCATTGCCCTTTTGCGGCCGTGAGTAACGCGCTGAGAAGTTGGTTT
CCCAGCCAGAAGCCATAAAAAACAAAAACGGCCCTTGCCGTGGCCTCTTC
CTCCTTAATCCTTAATGATTATCGTTCCACAGTACGCCTTAGGATATTGG
AGACAATTCGATTGAAGTTTTTCTCGGTAGCACAGCACCATACGTTTCCG
CTCGATTTTTTTTCTTCCAGACCGTGTTTTCCCAGCTCCTCCTTATCCCC
GCTATGAATAGGACGAAACTTTTTCGTCGTGGTTCGTTCCTCCTTGCCCT
AACCCTACGCGATATTATAATCGCACCTGCACAGACACTTTCTCATAGGA
CAATATGCTACGTCACCCGGCACACGCACGATGACTGGCTCGTTCGACTG
CAGCACCCAATTTTATATCGGCTAAGAGTCGAGAAGGATGGCAGGACGAA
ACCGTCAGAATTGTCGATTCTTGACCGAGGGCCTAGCTCGTGCGGAGGAG
CGGTGTCAGAAGAAGTTGTACCCGCCGCCAAGCTGATTTTCACCGGGGAC
CCCTTGGTCTGTCCCCTTTTGCTTCCTCTCTCCCCAGAAAACGCTCGACA
AGATGGAGCCGAAGTGGTTCACCGCCCCAAGGGGGAGCCCGAGGCCAACA
AAGGTGCGGGCCACTTTTAACGCGTACTTCCGTTGACACCCGCCGGTTGA
TGGATTCGTGCTTTCGCTCCGTGATCTCCCGTTCCACGCCTTGTGATCGC
ATCAGCAATAGGCTTATCGGACTAGTGGACCTGAGTTTATCGCTCAAGGG
GTTCCTGGCGCGGTGCTGTTTTTACCTGGGTACGTGCGCTTTATGGGCGG
GGAAGTGCCGCGGATCGCTTAGCTCTATTTCATAGGTGACGGGGTGTTTG
GGGGTGTTGCATCACGGCGGGGATGGGTGACGGACGTCCCCGCTCTATGG
TCTCTCCGTTGAGATCGCGCGCTAAGTGCGAACACGAACGAACTCAGCGG
GGTTTGGTAAGAATCCTGCTGCAAGCTCGCAGGAAATATGATTAAAAACT
AGCTTGCGGCGTCGATGCTGCCTCCACGCATTGCTTTGTCTCGTGGAAAG
TGGGGGTATAGTTCCTCCCCTTCCCCCCCCCCCCCCCGGTCTGTTGAAAC
ACTAAACACTACTCAGGTCGTATCCTCTCACTGTTCATGCGTCGGGCATT
TTTTCTCTCAGCATTGTGAACGCTGTAGAGGCGTTTTATGCCCGGGGGAT
TGTGAAAACGTTCCATGGATAAGATCATAACCAGCGTCTTGGCGTCGTGA
ACATCTCGTTGCATGCAGGAAAAAACGCCTCCCCTTTTAGTGGAACTCTA
TCCCACCTACTGGCGCGTGCGCACGGTTTCAACGGAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig645:272738..276375+

>mRNA_F-serratus_M_contig645.17387.1 ID=mRNA_F-serratus_M_contig645.17387.1|Name=mRNA_F-serratus_M_contig645.17387.1|organism=Fucus serratus male|type=CDS|length=1086bp|location=Sequence derived from alignment at F-serratus_M_contig645:272738..276375+ (Fucus serratus male)
AGGGGAAGACGAGACTTTGGTCGCGGGAGAAATGGAGACGGCGGCGGGGG
AGGGCGATTCGGTAGGATTTACGGAAGAGGCGGATGCTCGCGTGGCGCAG
CAGACGTTTGTAGTAGGGCCCATACCGCGGTTCACGGCCTTGTATTTCGA
GGAAGAAATGTCAGAGGACGGTGCTGGACCTTCTCCCGGTGCGCCGGGGG
ACCGCTCGGTCGATGGCGTCGGTCCCGAGGATCGCGCAAGCCTTGGGTTG
CAAGCGGGGAAGCCCGCCTCTCCCAGCAATGGATACCGTCGCGATCCGTT
TCTCCTTGCCTCGGCAACGCCTCCGGAGAAGCCCCTGAGCCGGGAGGAGA
CTTCGGAGCACGTGGAGGACGCCCGGCGCATCGCTCGTCAGCAGAGGGCT
GCGTACCAGAGGGGAAGACGAGACTTTGGTCGCGGGAGAAATGGAGACGG
CGGCGGGGGAGGGCGATTCGGTAGGATTTACGGAAGAGGCGGATGCTCGC
GTGGCGCAGCAGACGTTTGTAGTAGGGCCCATACCGCGGTTCACGGCCTT
GTATTTCGAGGAAGAAATGTCAGAGGACGGTGCTGGACCTTCTCCCGGTG
CGCCGGGGGACCGCTCGGTCGATGGCGTCGGTCCCGAGGATCGCGCAAGC
CTTGGGTTGCAAGCGGGGAAGCCCGCCTCTCCCAGCAATGGATACCGTCG
CGATCCGTTTCTCCTTGCCTCGGCAACGCCTCCGGAGAAGCCCCTGAGCC
GGGAGGAGACTTCGGAGCACGTGGAGGACGCCCGGCGCATCGCTCGTCAG
CAGAGGGCTGCGTACCAGAAAACGCTCGACAAGATGGAGCCGAAGTGGTT
CACCGCCCCAAGGGGGAGCCCGAGGCCAACAAAGAAAACGCTCGACAAGA
TGGAGCCGAAGTGGTTCACCGCCCCAAGGGGGAGCCCGAGGCCAACAAAG
GAAAAAACGCCTCCCCTTTTAGTGGAACTCTATCCCACCTACTGGCGCGT
GCGCACGGTTTCAACGGAGAAAAAACGCCTCCCCTTTTAGTGGAACTCTA
TCCCACCTACTGGCGCGTGCGCACGGTTTCAACGGA
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