mRNA_F-serratus_M_contig644.17371.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig644.17371.1
Unique NamemRNA_F-serratus_M_contig644.17371.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig644.17371.1 vs. uniprot
Match: D7G4D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D5_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.450e-8
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 MTAGQIKSELDSLSVGYVGLLEKAEFVRRLAEARTSPGTDGACDGD 138
            MTAGQIK+ELD+L VGYVGLLEK+EFV +LAEAR   G   A +G+
Sbjct:  537 MTAGQIKAELDALGVGYVGLLEKSEFVMKLAEARVDGGGKAALEGE 582
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BLAST of mRNA_F-serratus_M_contig644.17371.1 vs. uniprot
Match: A0A6H5KUZ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ2_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.140e-7
Identity = 37/75 (49.33%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:    1 MTAGQIKSELDSLSVGYVGLLEKAEFVRRLAEARTSPGTDGACDGDGGKDKXXXXXDANARAQEVVDDGAEEAGG 225
            MTAGQIK+ELD L V YVGLLEK+EFV +LAEAR           DGG +       ++A  +E     A EAGG
Sbjct:  544 MTAGQIKAELDVLGVSYVGLLEKSEFVMKLAEARV----------DGGGEAPGEGESSDAVEEEEGQASANEAGG 608
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BLAST of mRNA_F-serratus_M_contig644.17371.1 vs. uniprot
Match: D7G5D2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D2_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 2.730e-5
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 MTAGQIKSELDSLSVGYVGLLEKAEFVRRLAEA 99
            MTAGQIK+ELD+L V YV LLEK+EFV +LAEA
Sbjct:  272 MTAGQIKAELDALGVSYVSLLEKSEFVMKLAEA 304
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig644.17371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4D5_ECTSI1.450e-867.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUZ2_9PHAE3.140e-749.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G5D2_ECTSI2.730e-575.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig644contigF-serratus_M_contig644:372281..372739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue2.8e-07
Seed eggNOG ortholog2880.D7G4D5
KEGG koko:K22262
Hectar predicted targeting categoryother localisation
EggNOG free text desc.platelet formation
EggNOG OGsKOG1787@1,KOG1787@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size459
Cds size459
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931988.2665596-CDS-F-serratus_M_contig644:372280..3727391622931988.2665596-CDS-F-serratus_M_contig644:372280..372739Fucus serratus maleCDSF-serratus_M_contig644 372281..372739 +
1690964090.910019-CDS-F-serratus_M_contig644:372280..3727391690964090.910019-CDS-F-serratus_M_contig644:372280..372739Fucus serratus maleCDSF-serratus_M_contig644 372281..372739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig644.17371.1prot_F-serratus_M_contig644.17371.1Fucus serratus malepolypeptideF-serratus_M_contig644 372281..372739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig644.17371.1

>prot_F-serratus_M_contig644.17371.1 ID=prot_F-serratus_M_contig644.17371.1|Name=mRNA_F-serratus_M_contig644.17371.1|organism=Fucus serratus male|type=polypeptide|length=153bp
MTAGQIKSELDSLSVGYVGLLEKAEFVRRLAEARTSPGTDGACDGDGGKD
KGDGDKDANARAQEVVDDGAEEAGGTTRGGEEVSPDGEATGQDPVVPGVS
GEESEPPMPPPAEEAYGEPTGKGKVSEGVESGRENDDVGGAGSVGDREEV
RY*
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mRNA from alignment at F-serratus_M_contig644:372281..372739+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig644.17371.1 ID=mRNA_F-serratus_M_contig644.17371.1|Name=mRNA_F-serratus_M_contig644.17371.1|organism=Fucus serratus male|type=mRNA|length=459bp|location=Sequence derived from alignment at F-serratus_M_contig644:372281..372739+ (Fucus serratus male)
ATGACCGCGGGTCAGATCAAGTCGGAGCTCGATTCCCTGAGCGTCGGCTA
CGTTGGACTCCTCGAGAAGGCGGAGTTTGTGAGGAGACTGGCGGAGGCCA
GAACGAGCCCCGGGACGGACGGTGCTTGCGACGGCGATGGAGGCAAAGAC
AAGGGTGACGGCGACAAGGACGCAAACGCAAGGGCTCAGGAAGTCGTCGA
TGATGGCGCGGAAGAGGCAGGCGGAACAACGAGGGGGGGCGAAGAAGTCT
CGCCCGATGGCGAAGCAACCGGACAAGACCCGGTCGTCCCGGGGGTAAGC
GGGGAAGAGAGTGAGCCACCGATGCCGCCACCTGCGGAGGAGGCTTATGG
CGAGCCGACGGGAAAGGGTAAGGTTAGTGAGGGGGTGGAAAGTGGGCGTG
AAAATGATGATGTTGGTGGAGCTGGGAGCGTGGGCGACAGAGAAGAGGTG
AGGTATTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig644:372281..372739+

>mRNA_F-serratus_M_contig644.17371.1 ID=mRNA_F-serratus_M_contig644.17371.1|Name=mRNA_F-serratus_M_contig644.17371.1|organism=Fucus serratus male|type=CDS|length=918bp|location=Sequence derived from alignment at F-serratus_M_contig644:372281..372739+ (Fucus serratus male)
ATGACCGCGGGTCAGATCAAGTCGGAGCTCGATTCCCTGAGCGTCGGCTA
CGTTGGACTCCTCGAGAAGGCGGAGTTTGTGAGGAGACTGGCGGAGGCCA
GAACGAGCCCCGGGACGGACGGTGCTTGCGACGGCGATGGAGGCAAAGAC
AAGGGTGACGGCGACAAGGACGCAAACGCAAGGGCTCAGGAAGTCGTCGA
TGATGGCGCGGAAGAGGCAGGCGGAACAACGAGGGGGGGCGAAGAAGTCT
CGCCCGATGGCGAAGCAACCGGACAAGACCCGGTCGTCCCGGGGGTAAGC
GGGGAAGAGAGTGAGCCACCGATGCCGCCACCTGCGGAGGAGGCTTATGG
CGAGCCGACGGGAAAGGGTAAGGTTAGTGAGGGGGTGGAAAGTGGGCGTG
AAAATGATGATGTTGGTGGAGCTGGGAGCGTGGGCGACAGAGAAGAGGTG
AGGTATTGAATGACCGCGGGTCAGATCAAGTCGGAGCTCGATTCCCTGAG
CGTCGGCTACGTTGGACTCCTCGAGAAGGCGGAGTTTGTGAGGAGACTGG
CGGAGGCCAGAACGAGCCCCGGGACGGACGGTGCTTGCGACGGCGATGGA
GGCAAAGACAAGGGTGACGGCGACAAGGACGCAAACGCAAGGGCTCAGGA
AGTCGTCGATGATGGCGCGGAAGAGGCAGGCGGAACAACGAGGGGGGGCG
AAGAAGTCTCGCCCGATGGCGAAGCAACCGGACAAGACCCGGTCGTCCCG
GGGGTAAGCGGGGAAGAGAGTGAGCCACCGATGCCGCCACCTGCGGAGGA
GGCTTATGGCGAGCCGACGGGAAAGGGTAAGGTTAGTGAGGGGGTGGAAA
GTGGGCGTGAAAATGATGATGTTGGTGGAGCTGGGAGCGTGGGCGACAGA
GAAGAGGTGAGGTATTGA
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