mRNA_F-serratus_M_contig644.17372.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig644.17372.1
Unique NamemRNA_F-serratus_M_contig644.17372.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig644.17372.1 vs. uniprot
Match: D7G5M9_ECTSI (STI1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M9_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 9.240e-9
Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   79 DLLSMLMNNPKAQAXXXXXXXXXXXXXXXXXXSQNGLGAMAKYQDDPEILGVIEELKSLF 258
            D++  +MNNPKA          XX        +QNG+ AM+KYQDDPEIL +IEELK LF
Sbjct:   26 DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 85
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BLAST of mRNA_F-serratus_M_contig644.17372.1 vs. uniprot
Match: D7G4D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D5_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.350e-7
Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   79 DLLSMLMNNPKAQAXXXXXXXXXXXXXXXXXXSQNGLGAMAKYQDDPEILGVIEELKSLF 258
            D++  +MNNPKA          XX        +QNG+ AM+KYQDDPEIL +IEELK LF
Sbjct:  828 DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 887
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig644.17372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5M9_ECTSI9.240e-950.00STI1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G4D5_ECTSI2.350e-750.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig644contigF-serratus_M_contig644:374397..375551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size371
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig644.17372.1prot_F-serratus_M_contig644.17372.1Fucus serratus malepolypeptideF-serratus_M_contig644 374412..375441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931988.0768578-UTR-F-serratus_M_contig644:374396..3744111622931988.0768578-UTR-F-serratus_M_contig644:374396..374411Fucus serratus maleUTRF-serratus_M_contig644 374397..374411 +
1690964090.8346984-UTR-F-serratus_M_contig644:374396..3744111690964090.8346984-UTR-F-serratus_M_contig644:374396..374411Fucus serratus maleUTRF-serratus_M_contig644 374397..374411 +
1622931988.1342893-UTR-F-serratus_M_contig644:375441..3755511622931988.1342893-UTR-F-serratus_M_contig644:375441..375551Fucus serratus maleUTRF-serratus_M_contig644 375442..375551 +
1690964090.865025-UTR-F-serratus_M_contig644:375441..3755511690964090.865025-UTR-F-serratus_M_contig644:375441..375551Fucus serratus maleUTRF-serratus_M_contig644 375442..375551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931988.0979564-CDS-F-serratus_M_contig644:374411..3745461622931988.0979564-CDS-F-serratus_M_contig644:374411..374546Fucus serratus maleCDSF-serratus_M_contig644 374412..374546 +
1690964090.8454275-CDS-F-serratus_M_contig644:374411..3745461690964090.8454275-CDS-F-serratus_M_contig644:374411..374546Fucus serratus maleCDSF-serratus_M_contig644 374412..374546 +
1622931988.1163943-CDS-F-serratus_M_contig644:375330..3754411622931988.1163943-CDS-F-serratus_M_contig644:375330..375441Fucus serratus maleCDSF-serratus_M_contig644 375331..375441 +
1690964090.854789-CDS-F-serratus_M_contig644:375330..3754411690964090.854789-CDS-F-serratus_M_contig644:375330..375441Fucus serratus maleCDSF-serratus_M_contig644 375331..375441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig644.17372.1

>prot_F-serratus_M_contig644.17372.1 ID=prot_F-serratus_M_contig644.17372.1|Name=mRNA_F-serratus_M_contig644.17372.1|organism=Fucus serratus male|type=polypeptide|length=82bp
MGGATPPGGATPPGGAGPGASDLLSMLMNNPKAQAVLQKVQSNPKVMAAI
QDVSQNGLGAMAKYQDDPEILGVIEELKSLF*
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mRNA from alignment at F-serratus_M_contig644:374397..375551+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig644.17372.1 ID=mRNA_F-serratus_M_contig644.17372.1|Name=mRNA_F-serratus_M_contig644.17372.1|organism=Fucus serratus male|type=mRNA|length=1155bp|location=Sequence derived from alignment at F-serratus_M_contig644:374397..375551+ (Fucus serratus male)
GGCGCCCTGGGGGGCATGGGAGGGGCGACTCCGCCTGGAGGGGCTACTCC
GCCTGGAGGGGCTGGGCCAGGCGCGAGCGACTTGCTGAGCATGTTGATGA
ACAACCCCAAAGCCCAGGCCGTCTTGCAGAAGGTTCAGTCGAATCCAAAG
GTAGGCGAGCGTGCTCTTAAGATGGGTGGCTTCGTGAGTGAGGAGAGGCT
GCGTGTGCAGCCGTGCGCTTCGAAGGGCGGCATCCTCTCGCGCAACACTC
TGCAGCGACGACAAAACGGGGGTCACAAATACCTCGTGTTTCTCGCCAGA
AGCTCGGTTGATCTCGTGAAGCAAACGAGCCTGTGTAAGCGGAAAGCCAA
CACTACGGTGGAAATAATTCACTATAATAGCTGACAGAGACCGCGGAGGC
GGCAATACGATTGTGTTTCGCGTCTTCTGGTGGTGTTTTGAAGATATTTT
TCGCTCTAGGTTGGACCCATTTTCTTCAAAACACGCAGCCCGACAGGACT
CCCAAGACCAGCCCCCCAAGGAAAGAGCTGACCGATGCGATCCCAGCCGC
ACATGTTAATCGCGTGGGGTCTCAAGACTTCTCTCCTCGATAAGACGACC
GCGTTGCGGGCGGGATCGTAAGGGGTGTTTTTTTTTTTCACATAATTTTT
CGACCATGCAGGAGAGATCTGTGTATGTGTATGTTCGGTGATCGCCTGTC
CTTAATCGACAGCAGGCTGGGAGCACCTGCCGGGTCCCTTCTCCCGCAGC
GCAACAAAACGAACGCGCGAAACGGTGCAAGCGCGATGTTCCACGGAAGA
TTACCATGTTTTGTGTTGTTTTATGTATGTGTGCGCATCCGATCCGCCCG
CGTGTGTGGTAATGTGGTTATGCGTTGGTTTGTTTTTCGTTCTTGTGCTT
GCCGCTTTCATCCATCCGCATTGGCGCACGGCAGGTAATGGCGGCAATTC
AAGACGTGAGTCAAAACGGCCTGGGAGCAATGGCGAAATACCAAGACGAC
CCCGAGATTCTGGGCGTCATCGAGGAGCTCAAGAGCCTTTTCTGAGCAGC
CCGCTTCCCCCCGTTTTTATCCCGGCTGCCTCGGTGCCTCGGTGCCTCAC
CGTGAAGACAGCGGAAATATTGAGTGGCGGCTCCGGTGCGCCATCGTGCA
CTCGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig644:374397..375551+

>mRNA_F-serratus_M_contig644.17372.1 ID=mRNA_F-serratus_M_contig644.17372.1|Name=mRNA_F-serratus_M_contig644.17372.1|organism=Fucus serratus male|type=CDS|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig644:374397..375551+ (Fucus serratus male)
ATGGGAGGGGCGACTCCGCCTGGAGGGGCTACTCCGCCTGGAGGGGCTGG
GCCAGGCGCGAGCGACTTGCTGAGCATGTTGATGAACAACCCCAAAGCCC
AGGCCGTCTTGCAGAAGGTTCAGTCGAATCCAAAGATGGGAGGGGCGACT
CCGCCTGGAGGGGCTACTCCGCCTGGAGGGGCTGGGCCAGGCGCGAGCGA
CTTGCTGAGCATGTTGATGAACAACCCCAAAGCCCAGGCCGTCTTGCAGA
AGGTTCAGTCGAATCCAAAGGTAATGGCGGCAATTCAAGACGTGAGTCAA
AACGGCCTGGGAGCAATGGCGAAATACCAAGACGACCCCGAGATTCTGGG
CGTCATCGAGGAGCTCAAGAGCCTTTTCTGAGTAATGGCGGCAATTCAAG
ACGTGAGTCAAAACGGCCTGGGAGCAATGGCGAAATACCAAGACGACCCC
GAGATTCTGGGCGTCATCGAGGAGCTCAAGAGCCTTTTCTGA
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