mRNA_F-serratus_M_contig6430.17362.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6430.17362.1
Unique NamemRNA_F-serratus_M_contig6430.17362.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig6430.17362.1 vs. uniprot
Match: A0A6H5L5Q2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q2_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 3.380e-30
Identity = 56/68 (82.35%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 GAIHLAKNPATTPNSKHIDIRHHFIRERVANGEFKVVYVPSEEQHADFLTKPLHQGAFEVHRNFVMNI 204
            GA+HLA NPATTPNSKHID+RHHFIRERV  GEFKVVYVPS  QHADFLTKPL + AF VHRNFVMN+
Sbjct:  278 GALHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 345
[Close]
BLAST of mRNA_F-serratus_M_contig6430.17362.1 vs. uniprot
Match: A0A6H5KG18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG18_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.150e-29
Identity = 57/69 (82.61%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 GAIHLAKNPATTPNSKHI-DIRHHFIRERVANGEFKVVYVPSEEQHADFLTKPLHQGAFEVHRNFVMNI 204
            GA+HLA NPATTPNSKHI DIRHHFIRERV  GEFKVV+VPS  QHADFLTKPLH+ AF VHRNFVMN+
Sbjct:  346 GALHLANNPATTPNSKHIIDIRHHFIRERVDRGEFKVVFVPSHLQHADFLTKPLHKEAFSVHRNFVMNL 414
[Close]
BLAST of mRNA_F-serratus_M_contig6430.17362.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.940e-29
Identity = 56/68 (82.35%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 GAIHLAKNPATTPNSKHIDIRHHFIRERVANGEFKVVYVPSEEQHADFLTKPLHQGAFEVHRNFVMNI 204
            GA+HLA NPATTPNSKHID+RHHFIRERV  GEFKVVYVPS  QHADFLTKPL + AF VHRNFVMN+
Sbjct: 1046 GALHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 1113
[Close]
BLAST of mRNA_F-serratus_M_contig6430.17362.1 vs. uniprot
Match: A0A6H5L610_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L610_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.720e-28
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 GAIHLAKNPATTPNSKHIDIRHHFIRERVANGEFKVVYVPSEEQHADFLTKPLHQGAFEVHRNFVMNI 204
            GAIHLA NPATTPNSKHIDIRHHFIRERVA GEFKVV+V S+ Q ADFLTKPL +  F  HR+FVMNI
Sbjct:   63 GAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 130
[Close]
BLAST of mRNA_F-serratus_M_contig6430.17362.1 vs. uniprot
Match: A0A6H5KZC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZC8_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 6.130e-28
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 GAIHLAKNPATTPNSKHIDIRHHFIRERVANGEFKVVYVPSEEQHADFLTKPLHQGAFEVHRNFVMNI 204
            GAIHLA NPATTPNSKHIDIRHHFIRERVA GEFKVV+V S+ Q ADFLTKPL +  F  HR+FVMNI
Sbjct:  109 GAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 176
[Close]
BLAST of mRNA_F-serratus_M_contig6430.17362.1 vs. uniprot
Match: A0A6H5KHN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN8_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 5.430e-26
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 GAIHLAKNPATTPNSKHIDIRHHFIRERVANGEFKVVYVPSEEQHADFLTKPLHQGAFEVHRNFVMNI 204
            GAIHLA NPATTPNSKHIDIRHHFIRERVA GEFKVV+V S+ Q ADFLTKPL +  F  HR+FVMNI
Sbjct:  347 GAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 414
[Close]
BLAST of mRNA_F-serratus_M_contig6430.17362.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.470e-25
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 GAIHLAKNPATTPNSKHIDIRHHFIRERVANGEFKVVYVPSEEQHADFLTKPLHQGAFEVHRNFVMNI 204
            GAIHLA NPATTPNSKHIDIRHHFIRERVA GEFKVV+V S+ Q ADFLTKPL +  F  HR+FVMNI
Sbjct:  495 GAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 562
[Close]
BLAST of mRNA_F-serratus_M_contig6430.17362.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.530e-25
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 GAIHLAKNPATTPNSKHIDIRHHFIRERVANGEFKVVYVPSEEQHADFLTKPLHQGAFEVHRNFVMNI 204
            GAIHLA NPATTPNSKHIDIRHHFIRERVA GEFKVV+V S+ Q ADFLTKPL +  F  HR+FVMNI
Sbjct:  508 GAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 575
[Close]
BLAST of mRNA_F-serratus_M_contig6430.17362.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.860e-25
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 GAIHLAKNPATTPNSKHIDIRHHFIRERVANGEFKVVYVPSEEQHADFLTKPLHQGAFEVHRNFVMNI 204
            GAIHLA NPATTPNSKHIDIRHHFIRERVA GEFKVV+V S+ Q ADFLTKPL +  F  HR+FVMNI
Sbjct:  732 GAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 799
[Close]
BLAST of mRNA_F-serratus_M_contig6430.17362.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.950e-25
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 GAIHLAKNPATTPNSKHIDIRHHFIRERVANGEFKVVYVPSEEQHADFLTKPLHQGAFEVHRNFVMNI 204
            GAIHLA NPATTPNSKHIDIRHHFIRERVA GEFKVV+V S+ Q ADFLTKPL +  F  HR+FVMNI
Sbjct: 1808 GAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 1875
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6430.17362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5Q2_9PHAE3.380e-3082.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KG18_9PHAE5.150e-2982.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCD8_9PHAE5.940e-2982.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L610_9PHAE1.720e-2879.41Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZC8_9PHAE6.130e-2879.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHN8_9PHAE5.430e-2679.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5L3_9PHAE1.470e-2579.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWG1_9PHAE1.530e-2579.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGK7_9PHAE1.860e-2579.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAC2_9PHAE1.950e-2579.41Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6430contigF-serratus_M_contig6430:20298..20674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score72.0
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog400682.PAC_15698807
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3A8FB@33154,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons2
Model size364
Cds size210
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6430.17362.1prot_F-serratus_M_contig6430.17362.1Fucus serratus malepolypeptideF-serratus_M_contig6430 20298..20507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931987.6953692-CDS-F-serratus_M_contig6430:20297..205071622931987.6953692-CDS-F-serratus_M_contig6430:20297..20507Fucus serratus maleCDSF-serratus_M_contig6430 20298..20507 +
1690964090.683729-CDS-F-serratus_M_contig6430:20297..205071690964090.683729-CDS-F-serratus_M_contig6430:20297..20507Fucus serratus maleCDSF-serratus_M_contig6430 20298..20507 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931987.7166884-UTR-F-serratus_M_contig6430:20507..205571622931987.7166884-UTR-F-serratus_M_contig6430:20507..20557Fucus serratus maleUTRF-serratus_M_contig6430 20508..20557 +
1690964090.6981192-UTR-F-serratus_M_contig6430:20507..205571690964090.6981192-UTR-F-serratus_M_contig6430:20507..20557Fucus serratus maleUTRF-serratus_M_contig6430 20508..20557 +
1622931987.7326972-UTR-F-serratus_M_contig6430:20570..206741622931987.7326972-UTR-F-serratus_M_contig6430:20570..20674Fucus serratus maleUTRF-serratus_M_contig6430 20571..20674 +
1690964090.7144084-UTR-F-serratus_M_contig6430:20570..206741690964090.7144084-UTR-F-serratus_M_contig6430:20570..20674Fucus serratus maleUTRF-serratus_M_contig6430 20571..20674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6430.17362.1

>prot_F-serratus_M_contig6430.17362.1 ID=prot_F-serratus_M_contig6430.17362.1|Name=mRNA_F-serratus_M_contig6430.17362.1|organism=Fucus serratus male|type=polypeptide|length=70bp
GAIHLAKNPATTPNSKHIDIRHHFIRERVANGEFKVVYVPSEEQHADFLT
KPLHQGAFEVHRNFVMNIH*
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mRNA from alignment at F-serratus_M_contig6430:20298..20674+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6430.17362.1 ID=mRNA_F-serratus_M_contig6430.17362.1|Name=mRNA_F-serratus_M_contig6430.17362.1|organism=Fucus serratus male|type=mRNA|length=377bp|location=Sequence derived from alignment at F-serratus_M_contig6430:20298..20674+ (Fucus serratus male)
GGGGCGATTCACTTAGCTAAGAACCCGGCGACCACGCCCAACTCAAAGCA
CATCGACATTCGTCACCATTTCATTCGGGAGCGTGTGGCGAACGGCGAAT
TCAAGGTAGTCTATGTGCCGTCCGAAGAACAACACGCGGATTTTCTCACC
AAACCGTTGCACCAGGGGGCGTTCGAAGTTCACCGTAATTTTGTGATGAA
TATTCATTGATTATTTTTTTTTCGCATGGTATTAGTGTGCTAAATGTCGA
ATCCTGGGGGGAGTTGAGTATGACATGATTCCACATATAGCGACAAAGGG
TAGAGAATCAACATGAATTAATGTTGTGTTGAAACTACACTTGGTTTGAG
AAATCGGCATGAAGAACTCAGGGTTTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6430:20298..20674+

>mRNA_F-serratus_M_contig6430.17362.1 ID=mRNA_F-serratus_M_contig6430.17362.1|Name=mRNA_F-serratus_M_contig6430.17362.1|organism=Fucus serratus male|type=CDS|length=420bp|location=Sequence derived from alignment at F-serratus_M_contig6430:20298..20674+ (Fucus serratus male)
GGGGCGATTCACTTAGCTAAGAACCCGGCGACCACGCCCAACTCAAAGCA
CATCGACATTCGTCACCATTTCATTCGGGAGCGTGTGGCGAACGGCGAAT
TCAAGGTAGTCTATGTGCCGTCCGAAGAACAACACGCGGATTTTCTCACC
AAACCGTTGCACCAGGGGGCGTTCGAAGTTCACCGTAATTTTGTGATGAA
TATTCATTGAGGGGCGATTCACTTAGCTAAGAACCCGGCGACCACGCCCA
ACTCAAAGCACATCGACATTCGTCACCATTTCATTCGGGAGCGTGTGGCG
AACGGCGAATTCAAGGTAGTCTATGTGCCGTCCGAAGAACAACACGCGGA
TTTTCTCACCAAACCGTTGCACCAGGGGGCGTTCGAAGTTCACCGTAATT
TTGTGATGAATATTCATTGA
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