|
|
Homology
BLAST of mRNA_F-serratus_M_contig643.17355.1 vs. uniprot
Match: D7G7N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N6_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 5.180e-17 Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 1
Query: 46 MSNSQANVGTWLVDLIMKPGTSVQLVPAINFTLCLLGTMLLYLVANGESSVHLYVMGGLAVGLMVSINW 252
+S +G WLVDL MKPG+SVQLVP IN LC+L +L+Y+ A+GE S+H+YVMG L++GLM S+NW
Sbjct: 17 ISGGGEGIGQWLVDLAMKPGSSVQLVPFINGVLCILVGLLVYVAASGEGSIHVYVMGFLSIGLMGSVNW 85
BLAST of mRNA_F-serratus_M_contig643.17355.1 vs. uniprot
Match: A0A7S1UA77_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UA77_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 9.860e-12 Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 64 NVGTWLVDLIMKPGTSVQLVPAINFTLCL-LGTM--LLYLVANGESSVHLYVMGGLAVGLMVSINWFISEFNKVKRQQALEGDGG 309
+ G W ++LIM PG+SVQL+P IN L + +G M Y NG +H VM LA+GL V INWF+ E+ K K +Q GD G
Sbjct: 30 SAGEWAINLIMAPGSSVQLLPVINLALAIVIGVMGYTAYSTDNGAVQLHCSVMSFLALGLCVVINWFVGEYQKAKAEQEAAGDSG 114
BLAST of mRNA_F-serratus_M_contig643.17355.1 vs. uniprot
Match: B3RPS9_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RPS9_TRIAD) HSP 1 Score: 55.1 bits (131), Expect = 6.500e-6 Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 1
Query: 79 LVDLIMKPGTSVQLVPAINFTLCLLGTMLLYLVANGESSVHLYVMGGLAVGLMVSINWFISEFNKVKRQQALE 297
+VD I +PG + Q+V IN +L + + L E ++HL ++G L L++SINWF++E KVK + A E
Sbjct: 23 IVDNIFQPGVNSQVVIFINVVFVILLILFITLAVLWELNIHLIILGSLTFILIISINWFLAEIQKVKMESAQE 95
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-22_001650.1 |
| Exons | 3 |
| Model size | 1405 |
| Cds size | 324 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931986.735934-UTR-F-serratus_M_contig643:263412..263457 | 1622931986.735934-UTR-F-serratus_M_contig643:263412..263457 | Fucus serratus male | UTR | F-serratus_M_contig643 263413..263457 + |
| 1690964090.2475402-UTR-F-serratus_M_contig643:263412..263457 | 1690964090.2475402-UTR-F-serratus_M_contig643:263412..263457 | Fucus serratus male | UTR | F-serratus_M_contig643 263413..263457 + |
| 1622931986.794017-UTR-F-serratus_M_contig643:269315..270351 | 1622931986.794017-UTR-F-serratus_M_contig643:269315..270351 | Fucus serratus male | UTR | F-serratus_M_contig643 269316..270351 + |
| 1690964090.2992246-UTR-F-serratus_M_contig643:269315..270351 | 1690964090.2992246-UTR-F-serratus_M_contig643:269315..270351 | Fucus serratus male | UTR | F-serratus_M_contig643 269316..270351 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931986.7506125-CDS-F-serratus_M_contig643:263457..263532 | 1622931986.7506125-CDS-F-serratus_M_contig643:263457..263532 | Fucus serratus male | CDS | F-serratus_M_contig643 263458..263532 + |
| 1690964090.2680638-CDS-F-serratus_M_contig643:263457..263532 | 1690964090.2680638-CDS-F-serratus_M_contig643:263457..263532 | Fucus serratus male | CDS | F-serratus_M_contig643 263458..263532 + |
| 1622931986.765111-CDS-F-serratus_M_contig643:268780..268911 | 1622931986.765111-CDS-F-serratus_M_contig643:268780..268911 | Fucus serratus male | CDS | F-serratus_M_contig643 268781..268911 + |
| 1690964090.276653-CDS-F-serratus_M_contig643:268780..268911 | 1690964090.276653-CDS-F-serratus_M_contig643:268780..268911 | Fucus serratus male | CDS | F-serratus_M_contig643 268781..268911 + |
| 1622931986.7799141-CDS-F-serratus_M_contig643:269197..269315 | 1622931986.7799141-CDS-F-serratus_M_contig643:269197..269315 | Fucus serratus male | CDS | F-serratus_M_contig643 269198..269315 + |
| 1690964090.2857566-CDS-F-serratus_M_contig643:269197..269315 | 1690964090.2857566-CDS-F-serratus_M_contig643:269197..269315 | Fucus serratus male | CDS | F-serratus_M_contig643 269198..269315 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig643.17355.1 >prot_F-serratus_M_contig643.17355.1 ID=prot_F-serratus_M_contig643.17355.1|Name=mRNA_F-serratus_M_contig643.17355.1|organism=Fucus serratus male|type=polypeptide|length=108bp
MSNSQANVGTWLVDLIMKPGTSVQLVPAINFTLCLLGTMLLYLVANGESS VHLYVMGGLAVGLMVSINWFISEFNKVKRQQALEGDGGTSTTSAAASGEE STRPKTD* back to topmRNA from alignment at F-serratus_M_contig643:263413..270351+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig643.17355.1 ID=mRNA_F-serratus_M_contig643.17355.1|Name=mRNA_F-serratus_M_contig643.17355.1|organism=Fucus serratus male|type=mRNA|length=6939bp|location=Sequence derived from alignment at F-serratus_M_contig643:263413..270351+ (Fucus serratus male) CTTGTGCGTTGCTTTGAGTGAAGACGAATAACAGGAAAAATATCCATGTC
TAATTCTCAAGCGAATGTAGGTACATGGCTTGTCGATCTCATCATGAAGC
CGGGTACTTCCGTCCAACTGGTGAGCTTGATTCCCATCTCATTGCGGACC
GCATTGACCCAAGTCTAACACCTCTCCACATCCATGCCCTGGTGTTTGGC
AGCAGCTGTCTGCCGTGTGTTTAGTTTCTGTGAACGACTTACCAGGTTCC
TTATAAAATACTGTGCTGCTGAGATTGCTGTTCAGCCAGCCCGCTGAGGA
AACCACAAGCTTCGAGCTGCTACACTTGCTACTGCGTACTAAATACAGTT
TTAAACATATTGCGCTGTATGTTCTTCTCCCTTCCTTACAGCACTCAATA
CTGTGTGTCCAACACGCATGGGACCTATACCCAGGCCAGTAGACACGTCG
CGATTTTCGGAAGCACCTTTCAACATCACGTTCATGGGTTTGTCTTTGCA
GCCTATGATCCCACCTAAACGTTTTGACATTTCCCCCACTGACTATTACT
GGGGGATGCCCAGAAGGTCTAGATGTGTTTCGTGGGTTCGAGGGGTAGAC
TATGGCGTATAGTATCTACGAAATTGGTTCGTGTAGAAATATGTGCGCTG
TAGTACGTACAGTAATATTTATTACTCGGGGTATGTTGTGTGTGCGTGTT
TTCTTCCCATTCATTCTGGACATCAAGTTCGTTGGGCGTACCAGCCGGGG
TCACACAGGAGGAAGGTCACACAGGATTTCTCATCCATCTTCCTTCTGCG
GTGCGTGCCTTAATTTTTCTCGCGAGAAGCATTCAGCTATTCCTTTCCCT
CGTCGACCGTGAACTCGAATTTTGTGTACTTACGATTTAATTGTTCTCCG
CTCGTTGGGCATTTTTATTTTATTTATTTTATTTTTTAGTGAGAAAAATC
CCGTTCGCCGCGATCGAACTCACGTCCCAACGTGTCAGAAGGTTACGAGG
TTACCTCTGAGCTACCGGGGCGATCATATACCAGGTATCAATTAATTACC
TGTACGAATACTTATTATCTATTATCTAGCACTCAAAGCAGCACCCGTTT
GTAACTACCTTGAGGTTTACTGGCCCTGTGTCGGCGGACTCTCGGCAGTG
AACGCCATCGGAACGCAATTGCGTGACCCGATAAACTCGGGACTGACCCT
ATGATATATGGCGGTTTAAATAATGAATTGACGCCGCCGCGGAACTCGGG
AGGAATTCCGCGAGTAAGCACCAGATTCAGCTTGAGAATGAAGATGAACA
GGTTGACGCGGGACGGGACTGCGGAACCCGTCTCGCGAGACCAAATTCTC
AGGCGCGAACGGGGACAGGGAAATATTAATTTTCCCTGTTCAGCTAACCA
TGAGCAGGATTGGCAACCTTACCAGGTTGATCCTAAAGTACCGTTGCTAT
ATGTGATGACCATACATACATTCGACCGCCGGTACATTGAACATGCCCAT
TTCATACCGTTAGTGGGTGTGGGAAAGAGAGGCGCATATTAATTGGTCCA
TGGTGACCTGCCAAGGTAGCACCCGTTTGTAACTACCTTGAGGTTTACTG
GCCCTGTGCCGGCGGACACTCGGCAGTGAACGCGATCAATACGCAATTGC
GTGATCCGATAAACTCGGGACTTACCCGATGGCGTATGGCGGTTTAAATA
ATAAGTGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTGAGTAAGCACC
AGATTCAGCCTGAGTATGGAGATGAGCAGACTGACGCAGGAAGGGAATGC
CGAACCCATCTCCCGAGACCAAATTCTCAGGCACGAACGGGGACAGGGAA
GAAATCATTTTCCCTAATCAGGTGACCACGAGCAGGACTGGCAACCTTAC
CCGGTTGATCCTTACCCTTGCTATATGTGACAACAATACGTACATAATAC
ATACATACATACATGTATGGCCATTCATGTAGCAGAGTACTGATTAACCG
CGTAAGGTTGTCAATCCTACCCGTGGTCAGCTGAACAGGGAAAATGAATG
TTCCATGCCCCCGCTCGAGCCTGAAAAATTGATTTCGCGAGACGGGTTCG
GTCGTCCCGTCCCGCGTCAGCCTGCTCATCCCCATACTCAGGCTGAATCT
GGTGCTTACTTACGGGATTCCTCCCGAGTTCCGCGGCGGGTTCCATTTAT
GAAACCGTCATACGCCATCGGGTAATTCCCGAGTTATCAGGTCACGCAAT
TGCGTACCGATGGCGTTTCCTGCCGAGAGTCCGCCGGCACAGGGGCAGTA
GTCCCCAAGGTAGTTCCAGTAACGGATACTGCCTTTGCAGGTTACATGGA
CTATGACCAATTAATGTTTTCTTTTCTTTTCTTTTTCCCGACACCCATCA
TTGGTACGAAGGGGTTATATTAATAGCATGTTGAAAGTATCGGCGACTAG
ACTGAGTTGAACGGAGTAGTTAGTATTCAAGTATTTTGTTAAGATTGTGA
TTGGCCGCTTGATTTAAGAGCTACAAGCATGTATCACCTGATAATACTTA
CCTGGTGTGCTGTTCATTCCTCGGAAAGGATGGTAAGAGTTAAAACCCGC
TGTCCGCTTTCCAGGTTCGCCATCGCTACGCTGCTCTATTCTCTACTCCA
TATATTATCAATTCGAAGACCATTTACCACACCCCCTTTCCAAAATAGCT
TGCAGCTATTGAAGTTTTTTTTATATATATCAAATTCTAGCTCGTGGTCA
GCTGAATAGCGAAAATGTTTTTTTTGTGTGTCCCTGTTCATGAGGAAATA
TTTTTCGCGAGACAGGTTAGACTATCACGTCCTGGGTCAGCCCGCTCGTC
TTACACACCCACAGACTGAATCTGGCGCTTGCCCAAGGGCTCGTCCTCCG
CCTCGCGCTTTCCGTGACGGTGTCCATCTCAACCGTCATCCGCCATCGGA
TTATTCCCGAGTTTATCAGGTGGCGCAATTATTGCGTACCGCTGAAGGCG
CTCACCGCCGAGAGTCCGCCAACACAAGGCCAGAAGTCCTCAAGGTAGCT
CGAGTAATACAGGCAATGCTGCCTGTCAATGGGACCCTCTCCTTTCCCAC
GTCTACGACCTCGACCTGATGCCTGACACTGTGGCTGAGGGCATGCGCGA
GATACCGAAACTGTTGTACAGCCTTGACCGCGCCTTCGTTTAACTGTTCA
GAGCTTTGCTCAGTCAGTCTAGAGGCGTGAAAGCTGCCACCTGGTGATCT
GGTTGCTGCACTCTTCTGCCGTGGCCAGAGCCCTCCCCGCCGCGGACAAG
TACCCCTCTATCAGGACCACGCTACCACGCTAGACCTCGTCCTTGTATGT
GGTATCAGGACTATTTGTGGAATGGTACTAGCCGGTCGCCCCGGTGGTTC
AGTCGGTAACCTGGAAACCTTCCGACGTTGGGACGTGAGTTTGAATCTCG
GTGCAGTCACACGAACTGGGGTTTTTCCTCATGCCCAGCAAGGGGAGACC
GATTAGTTCGTGGGTACACAAAATTCGACTTCACGGTCGGCGAGGGAAAG
AGGCTGCTGAATTTTTCTCGCTAGAAATATTTAAGGCAAGCACCGCAGAA
GGAAGGTTGAAAAATCATGTGTCACCTCCCTCCTGTTTGACCCCGGCTGG
TGCGTCCACAAGACTGACGTCCAGAAGAAATTGGATGACAACACACACAC
AACAACAGACACTGTACGATATCATACGGGAAGCGCTTGACTTCGTCCTT
TAGGCGACCGTCGCTTCAAAAACTACTCGGCCTTCGGCGGCACCGCCCTA
GGGTTGTTGTCATAGGATTATAGGATTACAATTTACCACTCAGAAATGGT
ATTTCCCAATGTTTTTACGGCGGAGTTCTGGTTTGTCACATTACCAACTA
AATGTATGCTGGAACTTTACCATGTTTGTCATACACATACTCTCTGTACC
GGTATTGTATAGATTCTTGTAGTGGGCGTGGGAAAAGAAAGACGCTCATT
AATTGATTCATGATATACCTAAATAGGCAGCATCCGTTCCTCGAGCGGCC
TTGGGTGACTACTGGCCCTGCGCCGGCAGACTCTCGACGATGAACGCAGT
CGGTACGCAAGTGCGTGACCTAATATACTCGGAACTGACCCGACGGTGGT
TTACCCTGAGGAATTATCATCGGCGGTGAAGTTATCATCGTTTGGAGCAA
GCCAGATGATTAAATCCTGCTGGAAACCCATTACCAGGTACTGAGATTAT
AGTTGCCTTGGTACACTGGTCGACCGTGGATACGATGGCAATTGCCATTA
CAATCAAAACGATGGGTGGGCGGCAGCAGTTGTTGTTGCTTAGACGCGTA
AGGTAGCTCAGCTCGATGATAGCGTAGGAAGATGAGGTCGAGAGACCCGC
GCTTCAAGGCGTAGGCGACACGTTGCCCCCCCCCCGCGCCGAAACTATAC
AAGGCGTTGTCCGTGGGAAGTCGTTCATGTACGAGGATAACGCGCTCGAG
GACCCAATGCTGCGCCTGGCGGAGCTGTTTTCCAGACGCTTCCGCGTGCC
GTTCTTCGGAGTTACAGCACCCGGCATCCCCAAGGATGCTGCATGTGAAC
ACAAGCAGCTCGAGTTTGATGGGTTGGAAGCTCGCAGAACTTTCTCGGTC
CTATGCCGGGAGAGTGCTGTGTGCATGTGTGGGTGTGTGATTGTCGCGTC
AACCCAGTAGGCCCCAACCATATACACTACTAGAGCCTATGTACTCTCGT
ACAGCGCTGTATCGGTCGGCGTCTTAGCTTTGTCCGAGCAAGCTTACGAC
TCTCTATACCGTAGTTAAATACACGACGAATAAAGCTAAAAAGGTTCACC
CATTAATAATAACCTACAGTTAAAAACCTGCAGTTAAGAGCTCTACAACG
ACCGCCGCAGGTCAAACCCCCTCCATCTCATCTACAAAGCCCTCGGGAAG
TTGTCCATTTCTGTACAGCCAGCTCTCAAAGTCATCGCTTTCACACGATC
AAAGTACACAACTGGAGTAAAGTAAAACACCTTCCGTGGAATTCTTCTCC
TGACTGCGCAAAGTGTGCCGACTCAGACCCAACTGGTGTGAACCAACTGG
TGTGAATGCGTCCAGCATTCGAAGTCCGGGTGTGTGATTAGGAGAGCCAT
CGAGCATTTTCAGAGTTGCGTGGGATAACCCGACCCTCTTAATAGCTCAT
GTAGAGGGTAGCCTGCCTTGCACGGTTTGATGCCGAGTTACTCTGAGATT
AAGATAAATTCTGCCGCACCGGGACCAAGCCGGATGCCGCCAGCACACAG
GTTTTAGGGGTTTCAAACTCCATTTGAGTATGTACTCATCACTGTATTTT
GAAACGCTCCGGCCCCAGGTGCCCGCGATCAACTTCACCCTGTGCCTCTT
GGGGACGATGCTGCTGTACCTGGTCGCCAACGGGGAGAGTAGCGTCCACT
TGTATGTGATGGGGGGCCTGGCCGTGGGACTCATGGTGTCGATAAACTGG
TGAGGTTGTACGATATCTCTTACACCGGCGAGCTGCACGCCCAAAACATG
TTGCGGAGAGATGCACCACGGTACTTTGCGATGTGTGTTGGGCAGGTTGG
CGTTTTATTTATACTATTTCGATTCCATCAAAGATTACACGCTCACCTTA
CCTTGACTAAAAAGGACACACTGTACCGGGTTTATATATAACAAACATTT
GATGTGGGTTTAGTAGCCTTCTGTAACCTCAAAAGACTCGCCACCACGAT
TGCCCCCTTTTCTGTTTGATGCACTGCACGCCCAGGTTCATCTCGGAGTT
CAACAAGGTAAAGAGGCAGCAAGCACTAGAGGGCGATGGAGGTACCAGTA
CCACCTCCGCCGCTGCTTCGGGAGAAGAGTCCACTAGACCAAAAACAGAC
TAGAGGGGCGGAGAGGTGGAGGGGTTGGATTCCACAAGAGGAGGCGTTAC
TGCCGCCCTGAAACTTGATCGCCGGAGTTTGGAAACTAATCGCTTGGGTG
GTGGGTTGAAGGAGACTACTACATGGTCACGTGGAGGTGGCGCACCCCCT
TCGCTGCAACTGGAGAAAAGTCCAGTAGACCGAAAAAATGGACTAGATGG
TTTTCCGCAGAGGAGTTCCTTCCGTCGTGGATGTCGATCGTTATGGTTCG
GAAACGAACGACTCGGGTGGCACGTTGAGGGAGACCACAGGCTCGCATGG
GGGTAGCGTTTTTTTACGGATCGTCGAATCCCGCTCTCGCTTTGGCGGAG
TGCGTTTTCCGATGACCGTCGTGCCCCTTATGGCGCCCCCGAATCGTAAG
GTTCGTCACTTCGGTTCTTGACCGGCGATACGTGGTTTTATAGCATCTTC
CGCGGAGTGTGTTTTGTGTTTTCTTCCCATTTATTCTGGACATCAAGTTT
GTTGGACGTACGAGGCGGGGTCACACAGGATTTTTCATCACCTTCCTTCT
GCGGTGCGTGTCTTAATTTTTCTCGCGAGAAGAATTCACATTCCTTCCCC
TCGTCGACCGTGAAGTCGAATTTTTGTGTTAACGATTTAATCGTTTTCCA
CTCGTTGGGTATTTTTATTTTACTTTTATTTCTATTTTTTTAGTGATAAA
AATCCCGTTTACCGTGATCAAACTCACGTCCCAACGTGTCAGAAGGTTAC
GAGGTTTCCTCTGAGCTACCGGGGCGACCGAACGCAAGCAAAACAAATCA
CGGCAGGCAAACGATTGGCGAGAAGATTCCCTCCCAAGTAACATGGCGAA
TTATCTTGAAAAACGAAGAGGTGTTAAAAGAGTTTCATGCTGCGGAGGAT
TGATTGTCGTTTTTTGGAAAAAACCTGATTTGATTTCTAGCTACTCGATA
GTTAGTTGAGAGTGTCGTGCAGTCTATTTGTTCAGCCGTGCTCGTGTGAC
ATCTCCACCTCGATTCAGTCGCGATGATTGATGCCAATC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig643:263413..270351+ >mRNA_F-serratus_M_contig643.17355.1 ID=mRNA_F-serratus_M_contig643.17355.1|Name=mRNA_F-serratus_M_contig643.17355.1|organism=Fucus serratus male|type=CDS|length=648bp|location=Sequence derived from alignment at F-serratus_M_contig643:263413..270351+ (Fucus serratus male) ATGTCTAATTCTCAAGCGAATGTAGGTACATGGCTTGTCGATCTCATCAT GAAGCCGGGTACTTCCGTCCAACTGATGTCTAATTCTCAAGCGAATGTAG GTACATGGCTTGTCGATCTCATCATGAAGCCGGGTACTTCCGTCCAACTG GTGCCCGCGATCAACTTCACCCTGTGCCTCTTGGGGACGATGCTGCTGTA CCTGGTCGCCAACGGGGAGAGTAGCGTCCACTTGTATGTGATGGGGGGCC TGGCCGTGGGACTCATGGTGTCGATAAACTGGTGCCCGCGATCAACTTCA CCCTGTGCCTCTTGGGGACGATGCTGCTGTACCTGGTCGCCAACGGGGAG AGTAGCGTCCACTTGTATGTGATGGGGGGCCTGGCCGTGGGACTCATGGT GTCGATAAACTGGTTCATCTCGGAGTTCAACAAGGTAAAGAGGCAGCAAG CACTAGAGGGCGATGGAGGTACCAGTACCACCTCCGCCGCTGCTTCGGGA GAAGAGTCCACTAGACCAAAAACAGACTAGGTTCATCTCGGAGTTCAACA AGGTAAAGAGGCAGCAAGCACTAGAGGGCGATGGAGGTACCAGTACCACC TCCGCCGCTGCTTCGGGAGAAGAGTCCACTAGACCAAAAACAGACTAG back to top
|