mRNA_F-serratus_M_contig643.17358.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig643.17358.1
Unique NamemRNA_F-serratus_M_contig643.17358.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig643.17358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig643contigF-serratus_M_contig643:309375..313517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size273
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig643.17358.1prot_F-serratus_M_contig643.17358.1Fucus serratus malepolypeptideF-serratus_M_contig643 309375..313517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931984.7357926-CDS-F-serratus_M_contig643:309374..3094501622931984.7357926-CDS-F-serratus_M_contig643:309374..309450Fucus serratus maleCDSF-serratus_M_contig643 309375..309450 +
1690964089.2420008-CDS-F-serratus_M_contig643:309374..3094501690964089.2420008-CDS-F-serratus_M_contig643:309374..309450Fucus serratus maleCDSF-serratus_M_contig643 309375..309450 +
1622931984.7522085-CDS-F-serratus_M_contig643:309787..3099361622931984.7522085-CDS-F-serratus_M_contig643:309787..309936Fucus serratus maleCDSF-serratus_M_contig643 309788..309936 +
1690964089.252623-CDS-F-serratus_M_contig643:309787..3099361690964089.252623-CDS-F-serratus_M_contig643:309787..309936Fucus serratus maleCDSF-serratus_M_contig643 309788..309936 +
1622931984.7708142-CDS-F-serratus_M_contig643:313469..3135171622931984.7708142-CDS-F-serratus_M_contig643:313469..313517Fucus serratus maleCDSF-serratus_M_contig643 313470..313517 +
1690964089.2695777-CDS-F-serratus_M_contig643:313469..3135171690964089.2695777-CDS-F-serratus_M_contig643:313469..313517Fucus serratus maleCDSF-serratus_M_contig643 313470..313517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig643.17358.1

>prot_F-serratus_M_contig643.17358.1 ID=prot_F-serratus_M_contig643.17358.1|Name=mRNA_F-serratus_M_contig643.17358.1|organism=Fucus serratus male|type=polypeptide|length=91bp
RHRAANCVQGLAPLGHWQERQLSLKGRINLMMMVSLPALTAEDVGVLKRA
FAGDNATPAIIEALCSSKSTTSVRQVVEGHLLEKDRVSTFA
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mRNA from alignment at F-serratus_M_contig643:309375..313517+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig643.17358.1 ID=mRNA_F-serratus_M_contig643.17358.1|Name=mRNA_F-serratus_M_contig643.17358.1|organism=Fucus serratus male|type=mRNA|length=4143bp|location=Sequence derived from alignment at F-serratus_M_contig643:309375..313517+ (Fucus serratus male)
CGGCACCGAGCTGCAAATTGTGTGCAAGGTCTCGCTCCTCTTGGCCACTG
GCAAGAGCGTCAGTTATCATTGAAAGGTTCGGCCATTTCGTTTGTTTTCT
GAACCAAGGAAATATCAATATAGGGGGTGGAGCGCACGCCAACCTTAAAT
ATTGAAAATATTGTGACTTCAGGCCCCTCAACACATGCTCCAGCTTTGAA
AAATCAAATTTTGAACCGTAGATCAGGGGCAAGGAGCACGAGCACGCTCC
GCAGGTCAATCGAGCACCACACGTTCAAGTAAGCGGTCGATAGAGGAGAT
GGCCGCATGAATATACTTGCTCGGAGAGGAGACACATTTTTGATTGGTTT
TGAATGTTTTGTTATCGCTTCGACGTCCTCCGGCATTATTGATGATGTGA
TCACTCGGTCCAGGAAGAATCAACCTGATGATGATGGTGAGCCTTCCGGC
CCTGACGGCGGAAGATGTGGGAGTGCTCAAGAGGGCTTTCGCCGGCGATA
ACGCCACGCCGGCCATCATCGAAGCTCTCTGCTCCTCCAAGTCCACCACA
AGCGTGCGCCAGGCACGGCACGACGCATTTTCCGAGCATTTTTTGTACCA
TTACCGTTCTCTCTTTTGTTCAGAGAGACGTCGCACGTTTTCCCCCTCTT
CCGGATAGTGTTTTTCTACCATATACCTTGTGACCACGGGCTGGATTTTT
TATATTAGCTTATTATGTGAGAATTCAATCTGATCAATAAAAATACCTGT
ATATCGGTATCCTAACAACCAGTAGGGCTATTGATATCTCTAATATTAAT
AGATACTTGTACATCTCTCGAGTGCTTTTCTTAACTAAAAATAGTACCAG
GTAGAAAATAATATTTGGTCTCCATGAAGAGCTCTCGAAATTTGAATAGC
TCCAGGCCTAGGTCCGTCTAACTTCTGAAATCACGGCAGGCGCCACAGGG
GAACCACCGATCGCATTCTCCGGAGGGAAGTTGTTGTCATTTTATCTTAC
TATTAATATTACAGAATATACCGCTGCACAGCGTGTAACAGGTTACCAGT
GCCACAGTACGTTGACGAAATCGTTTCACTTTTGTCAGAAAACTGTTCAA
CTCAAGAATCTACCTGCTAGATATGTGCGACCCCCCAAAGCGTTGGGACT
CTTACGGCGGCAACGGTACGGTATGGTTGAGCTGGCCGACGTTCTGTTGC
CAATTTGTACACATCCGTCCGTGTGGTCTGTATCGACCTATGGTTCTCGA
GAGAGGTTTGACGCTATATTATTGGGATCAGTGCGCGGACAGGGGAATCT
TATTTTCCCTGTTCAGCTGGCCACGAACTGTGGTTGTTGTGGGGATCCTT
TTTACCCACGACAGGAACTGTTCTACGCACGTATGTATCTAGATGGGTAA
CCCCGCGCACATACACCTGATCGGAGGTTTCAATCCGATACTTTCAACAT
GCCCGCTTCATACCATTAATTATTGGGTGTGGGAAAGAGAGGCGCACATT
CATTGATCCATGGTGACCTGCCAAGGCAGTACCCGTTTGGAACTACCTTG
AGGTTTACTGGTCCTGTGCCGGCAAACTCGTGGCAGTGAACGCCATCGGT
ACACAATTGCATGATCCGATAAACTCGGGACTGGCTCGATGGCGTATGGC
GGTTTAAATAGATAAACGGATGCCGCCGTGGAAATCGAGAGGAATCCCGT
AAGTAAGCACCAGATTCAGCGTGAGTATGGAGATGGGCAGACTGACGCGG
GGCGGGACTGCCGAACCCATCTCGCGAGACCAAATTGTCAGGCACGAACG
GGGACAGGGAAACATATAGTTTCCTTGTTCAGCTGACCACGAGCAGGATT
GGCAACATTACCCGGTTGATACATAATCTTGCTATGTGTGTGACGATACA
TACATACACAGTACACGATATGTGTGTTGTTTGTGTTTATTAAATTGCAC
ATAACCGCGCAATCCGGCCCTGTCATCATCATATGCCTAGTCATTCTATG
CCACTCGCATTGATCCTCCCAATGGGGTGTCAATGATACTTATTACGTAT
GTATGTGTGTATGGTCACACATATAGCAAGAGCAAGGATCAACCGGGTAA
TGTTGCCAATCCTACTCGTGGTCAGCAAACAAGGAAACTGTATGTTTCTC
TGTCCCCGTTCGTGCCTGACAATTTGGTCTCGCGAGATGGGTTCAGCAGT
CCCGCCCCGCGTCAGCCTGCTCATCTCCATAATCACGCTGAATCTGGTGC
TTACTTACGGGATTCCTCTCGATTTCCGCGGCGGCGTCCATTTATCTATT
TAAACCGCCATACGCCATCGAGCCAGTCTCGAGTTTATCGGATCATGCAA
TTGCGTAACGACGGCGTTCACTGCCACGAGTTTGCCGGCACAGGACCAGT
AAACCTCAAGGTAGTTCCAAACGGGTACTGCCTTGGCAGGTCACCATGGA
TCAATGAATATGCGCCTCTCTTTCCCACACCCAATAATCAATGGTATGAT
GTGGGCATATGTTGAAAGTACCGGATGGAAACCTCCGATTGATCAGGTGT
ATATGCGTGTGGTCACCCATCTAGATACATACTGGTACGTGCGTAGAACA
GTTCCTGTCGTGGGTAAATAGGAGCCCCACAACAACCACAGTAGTAGTAG
TATACTACTAGTAGTATAATGCAGTACTTCAAAGAAAAGTGTAAACGTAT
CTAAACCTTCTGAGCATCCACCCTCGGGAGATGCCACCTCTTCTTGTACT
AAATAGCTGGAACGGTAGTAGTTCACGTGTCCGCTGGTACTTTCAACATG
CCCACTTCATACCAATAGTGGGTGTGGGAAAGAGAGGCGAATATTAGTTG
GTCCATGGTGACCTGCCAAGGCAGCATTCGTTAGGAACTACCTTGAGGTT
TACTGGCCCTGTGCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACGCA
ATTGCGTGGCCCGATAAACTCGGGACTGACCCGATGGCGTATGGCGGTTT
CATAAATGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAACAC
CAGAGTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGACGG
CTGAACCCATCTCGCGAGACCAAATTCTCAGGCGCGTACGGGGAGGAATC
CCGTAAGTAAACACCAGATTTAGCCTGAGTATGGAGATGAGCAGGCTGAC
GCGGGACGGGACGGCTGAACTCATGTCGCGAGACCAAATTCTCAGGCGCG
CACGGGGACAGAGGAATATTTATTTTCCCTGTTCAGCTGATCACGTGCAG
GACTGGCAACCTTACCCGGTTGATCCATACTCTGCTATATGTGATGACCA
TACACACATACTACATACATACACACATACGTGTAAAAAAGTGGAACTTA
AGTTGTTTAGTCATTTTGAGGTTGGGCTCCATGATACGAGGCAAAGTTCG
CTAAATCATCAACCTTTCACAGCGCCAGTCCATCACCGCCGAGCGGGCGC
TGACATCTTCCGTGGTTCTTTGCTTTCTTCTTCAACGAACGAGGAGACTT
GCACTCATTTTACTACTTACAGCTGTAGTAACCTGGGGCGTAGTTTGCTA
GTGGTGATGCTTACTCCATCCCACCGTTTTTCGGAGGAAGTCTTAGGTTT
CCAACCTTTTGAAGCAAAACGAAAATGTGTGATATAGATTTATCAAATTG
CACATGAACCGCGCAAGCAGTCTAAGCTTCTCGTGCTGGGCCTCCCAGTA
GATATCAGTGATGATTGGTGTGCGTTTTTATGAAATTGCGTGTATATATG
CACCAGGAATATTCATTAAACTACAAATAATGACCGCGTATTTCGGCCCC
GCGTTGTTCTTACCATTCCTAAGCTATTCCTATTGCTCCTCCAAATGGGG
GGGGGGGGAAGGTGGCGACGATGGTCTGTGTGTATCTTAGGAAACCCCTT
TCCCCAGCTCCACTCAATGAGCAACGACAGCAAGTTTCATGTCTACTTTA
GCCCGGCCTGACTGTAGGTAGCGTCCGATCGCGGCTGCATGCCCTGCTTT
TGGTGTGTCACCTGCCGCCGATCATTCGCATCTATCTCTCTCCAGGTGGT
AGAGGGTCATCTCCTGGAGAAGGACAGGGTCAGTACTTTCGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig643:309375..313517+

>mRNA_F-serratus_M_contig643.17358.1 ID=mRNA_F-serratus_M_contig643.17358.1|Name=mRNA_F-serratus_M_contig643.17358.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig643:309375..313517+ (Fucus serratus male)
CGGCACCGAGCTGCAAATTGTGTGCAAGGTCTCGCTCCTCTTGGCCACTG
GCAAGAGCGTCAGTTATCATTGAAAGCGGCACCGAGCTGCAAATTGTGTG
CAAGGTCTCGCTCCTCTTGGCCACTGGCAAGAGCGTCAGTTATCATTGAA
AGGAAGAATCAACCTGATGATGATGGTGAGCCTTCCGGCCCTGACGGCGG
AAGATGTGGGAGTGCTCAAGAGGGCTTTCGCCGGCGATAACGCCACGCCG
GCCATCATCGAAGCTCTCTGCTCCTCCAAGTCCACCACAAGCGTGCGCCA
GGAAGAATCAACCTGATGATGATGGTGAGCCTTCCGGCCCTGACGGCGGA
AGATGTGGGAGTGCTCAAGAGGGCTTTCGCCGGCGATAACGCCACGCCGG
CCATCATCGAAGCTCTCTGCTCCTCCAAGTCCACCACAAGCGTGCGCCAG
GTGGTAGAGGGTCATCTCCTGGAGAAGGACAGGGTCAGTACTTTCGCCGT
GGTAGAGGGTCATCTCCTGGAGAAGGACAGGGTCAGTACTTTCGCC
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