mRNA_F-serratus_M_contig6419.17338.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: D8LEJ0_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ0_ECTSI) HSP 1 Score: 167 bits (422), Expect = 1.480e-45 Identity = 84/125 (67.20%), Postives = 96/125 (76.80%), Query Frame = 1
Query: 1 PSGVLVFLPSYATLRRVGTIWRACDVWRRLERIKGIIVEEPESGAEFKAARRRYEAAIDA-PGG---------GSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFNDWK 345
P+GVLVFL SY L+R IWR C+VW LERIKG+IVEEPE+ A+FKAA+RRYE A+D PGG GSA+LLAVYRGKMSEG+SFND YARGVLCVGIP+ N G PKI AK +NDWK
Sbjct: 347 PAGVLVFLSSYKLLQRAVAIWRKCEVWADLERIKGVIVEEPEAAADFKAAKRRYEDAVDGGPGGRGRGRGSAGGSAILLAVYRGKMSEGISFNDHYARGVLCVGIPYPNLGDPKIVAKKCYNDWK 471
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A7S4EN76_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EN76_9STRA) HSP 1 Score: 101 bits (251), Expect = 1.840e-22 Identity = 57/125 (45.60%), Postives = 75/125 (60.00%), Query Frame = 1
Query: 7 GVLVFLPSYATLRRVGTIWR----------ACDVWRRLERIKGIIVEEPE-SGAEFKAARRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFNDWKR 348
G LVF PSY+ L++ + W A DVW L R KG ++ EP S EF+ AR ++A I G S +LLAV+RGKMSEG+SFND YAR VLC+G+P+ N + AK +ND +R
Sbjct: 935 GCLVFFPSYSFLQKCVSCWNPNGYNQSQDTAPDVWNHLTRSKGKVIVEPTGSQEEFEVARDDFQATIQESG--SCILLAVFRGKMSEGISFNDAYARAVLCIGMPYPNYKDRGVKAKQSYNDEQR 1057
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A6H5JZN2_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN2_9PHAE) HSP 1 Score: 100 bits (248), Expect = 4.720e-22 Identity = 52/88 (59.09%), Postives = 61/88 (69.32%), Query Frame = 1
Query: 1 PSGVLVFLPSYATLRRVGTIWRACDVWRRLERIKGIIVEEPESGAEFKAARRRYEAAIDAPGGGSA----------LLLAVYRGKMSE 234
P+GVLVFL SY L+R IWR C+VW LER KG+IVEEPE+ A+FKAA+RRYE A+D GG +LLAVYRGKMSE
Sbjct: 676 PAGVLVFLSSYKLLQRAVAIWRKCEVWADLERSKGVIVEEPEAAADFKAAKRRYEEAVDGGPGGRXXXXXXXXXXXVLLAVYRGKMSE 763
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A7S1R5E9_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R5E9_ALECA) HSP 1 Score: 95.9 bits (237), Expect = 1.900e-21 Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 1
Query: 1 PSGVLVFLPSYATLRRVGTIWRA-----CDVWRRLERIKGIIVEEPESGAEFKAARRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFNDWKRSSSGSG 366
P GVL F PS+A L + W+ VW R+ KG+++ EP A Y AA + G AL LAVYRG+MSEG+SFND RGV+C+G+P+ P + AK +ND +R+S SG
Sbjct: 88 PGGVLCFFPSFAALEACASAWQRPEHAPAQVWARMRGAKGLVLVEPRGSDALPEACASYRAAAHSRAG--ALCLAVYRGRMSEGLSFNDDSCRGVICLGVPYPQAVNPAVAAKRRWNDAQRASRPSG 212
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A7S0C0Q2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0Q2_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 2.960e-21 Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 1
Query: 7 GVLVFLPSYATLRRVGTIW---------RACDVWRRLERIKGIIVEEPE-SGAEFKAARRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFNDWKR 348
G+L+FLPSY+ +++ W R VW R+++ KG ++ EP S +F+ A+R Y I G ++LAV+RGKMSEG+SFND ARGV+CVG+P+ N ++AK +ND +R
Sbjct: 25 GILIFLPSYSFMKKCVRAWNPDFDRSAYRGPSVWDRMKKSKGRVIVEPTGSQDDFEVAKREYIGTIKTKG--KCIILAVFRGKMSEGISFNDDNARGVICVGLPYPNAKDRAVSAKKAYNDEQR 146
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A1E7FKG8_9STRA (DNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKG8_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 5.670e-21 Identity = 58/128 (45.31%), Postives = 74/128 (57.81%), Query Frame = 1
Query: 7 GVLVFLPSYATLRRVGTIWR-------------ACDVWRRLERIKG-IIVEEPESGAEFKAARRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFNDWKR 348
G L+F PSY+ L + T W A DVW RL R KG +IVE +S EF+ AR Y+ I G S +LLAV+RGKMSEG+SFND AR VLC+G+P+ N + AK +ND +R
Sbjct: 1290 GCLIFFPSYSFLNKCITCWNPIGPERYSRFTETAPDVWTRLLRSKGKLIVEPTKSQEEFELARDEYKNTIKETG--SCILLAVFRGKMSEGISFNDDNARAVLCIGMPYPNWHDRGVKAKQAYNDEQR 1415
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A448ZL79_9STRA (HELICc2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZL79_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 8.770e-21 Identity = 56/125 (44.80%), Postives = 74/125 (59.20%), Query Frame = 1
Query: 7 GVLVFLPSYATLRRVGTIWRAC----------DVWRRLERIKGIIVEEPESGAE-FKAARRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFNDWKR 348
G LVF PSY+ L++ + W A VW R+ R KG IV EP E F++AR ++ I G S +LLAV+RGKMSEG+SFND YAR V+C+G+P N +I AK +ND +R
Sbjct: 250 GCLVFFPSYSLLQKCVSCWNATGYSRFQVSSPQVWNRILRSKGKIVVEPTGSQEDFESARDDFQDTIRETG--SCVLLAVFRGKMSEGISFNDDYARAVICIGMPLPNLIDRRIKAKKXYNDEQR 372
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A7S0FFG9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FFG9_9DINO) HSP 1 Score: 94.4 bits (233), Expect = 1.460e-20 Identity = 54/121 (44.63%), Postives = 66/121 (54.55%), Query Frame = 1
Query: 1 PSGVLVFLPSYATLRRVGTIWRACD-----VWRRLERIKGIIVEEPESGAEFKAARRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFNDWKR 348
P G+L F PS+ L W+A VW RL KG +V EP S A A Y AA + G A+ LAVYRGKMSEGVSFND RGV+C+G+P+ P + AK +ND R
Sbjct: 69 PGGILCFFPSFVALEACVATWQAAGGPSGHVWARLRCTKGAVVIEPRSAAALPEACASYAAAACSAHG--AICLAVYRGKMSEGVSFNDGLCRGVICLGVPYPQATDPVVIAKRRWNDAHR 187
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A0G4FSP7_9ALVE (Helicase ATP-binding domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FSP7_9ALVE) HSP 1 Score: 95.1 bits (235), Expect = 2.680e-20 Identity = 48/118 (40.68%), Postives = 70/118 (59.32%), Query Frame = 1
Query: 7 GVLVFLPSYATLRRVGTIWRAC-------DVWRRLERIKGIIVEEPESGAEFKAARRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFND 339
G+LVF PSYA L+ IW + +RLE KG ++ + + + +++ AI + G A+L AVYRGKMSEG+SFND +AR V C+G+P+ N G P++ K +FND
Sbjct: 1193 GMLVFCPSYAFLQNAAKIWNTPYSPATPQTIMQRLENAKGTVLTDDRDAKQSHRVKEQFDRAITS--GEGAVLFAVYRGKMSEGISFNDDFARAVCCIGLPYPNWGSPEVVQKRVFND 1308
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A7R9YYY0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YYY0_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 2.840e-20 Identity = 51/92 (55.43%), Postives = 61/92 (66.30%), Query Frame = 1
Query: 76 VWRRLERIKG-IIVEEPESGAEFKAARRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFNDWKR 348
VW RL KG +IVE S +F+AAR Y I + GGS +LLAVYRGKMSEGVSFND YARGV+C+G+P N I AK +ND +R
Sbjct: 1 VWDRLIASKGKVIVESTGSQDKFEAARAEYNGTIKS--GGSCVLLAVYRGKMSEGVSFNDDYARGVICIGLPLPNAFDRSIRAKRDYNDEQR 90 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6419.17338.1 >prot_F-serratus_M_contig6419.17338.1 ID=prot_F-serratus_M_contig6419.17338.1|Name=mRNA_F-serratus_M_contig6419.17338.1|organism=Fucus serratus male|type=polypeptide|length=122bp PSGVLVFLPSYATLRRVGTIWRACDVWRRLERIKGIIVEEPESGAEFKAAback to top mRNA from alignment at F-serratus_M_contig6419:20096..21635- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6419.17338.1 ID=mRNA_F-serratus_M_contig6419.17338.1|Name=mRNA_F-serratus_M_contig6419.17338.1|organism=Fucus serratus male|type=mRNA|length=1540bp|location=Sequence derived from alignment at F-serratus_M_contig6419:20096..21635- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6419:20096..21635- >mRNA_F-serratus_M_contig6419.17338.1 ID=mRNA_F-serratus_M_contig6419.17338.1|Name=mRNA_F-serratus_M_contig6419.17338.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig6419:20096..21635- (Fucus serratus male)back to top |