mRNA_F-serratus_M_contig6419.17338.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6419.17338.1
Unique NamemRNA_F-serratus_M_contig6419.17338.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: D8LEJ0_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ0_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 1.480e-45
Identity = 84/125 (67.20%), Postives = 96/125 (76.80%), Query Frame = 1
Query:    1 PSGVLVFLPSYATLRRVGTIWRACDVWRRLERIKGIIVEEPESGAEFKAARRRYEAAIDA-PGG---------GSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFNDWK 345
            P+GVLVFL SY  L+R   IWR C+VW  LERIKG+IVEEPE+ A+FKAA+RRYE A+D  PGG         GSA+LLAVYRGKMSEG+SFND YARGVLCVGIP+ N G PKI AK  +NDWK
Sbjct:  347 PAGVLVFLSSYKLLQRAVAIWRKCEVWADLERIKGVIVEEPEAAADFKAAKRRYEDAVDGGPGGRGRGRGSAGGSAILLAVYRGKMSEGISFNDHYARGVLCVGIPYPNLGDPKIVAKKCYNDWK 471          
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A7S4EN76_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EN76_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.840e-22
Identity = 57/125 (45.60%), Postives = 75/125 (60.00%), Query Frame = 1
Query:    7 GVLVFLPSYATLRRVGTIWR----------ACDVWRRLERIKGIIVEEPE-SGAEFKAARRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFNDWKR 348
            G LVF PSY+ L++  + W           A DVW  L R KG ++ EP  S  EF+ AR  ++A I   G  S +LLAV+RGKMSEG+SFND YAR VLC+G+P+ N     + AK  +ND +R
Sbjct:  935 GCLVFFPSYSFLQKCVSCWNPNGYNQSQDTAPDVWNHLTRSKGKVIVEPTGSQEEFEVARDDFQATIQESG--SCILLAVFRGKMSEGISFNDAYARAVLCIGMPYPNYKDRGVKAKQSYNDEQR 1057          
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A6H5JZN2_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN2_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 4.720e-22
Identity = 52/88 (59.09%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 PSGVLVFLPSYATLRRVGTIWRACDVWRRLERIKGIIVEEPESGAEFKAARRRYEAAIDAPGGGSA----------LLLAVYRGKMSE 234
            P+GVLVFL SY  L+R   IWR C+VW  LER KG+IVEEPE+ A+FKAA+RRYE A+D   GG            +LLAVYRGKMSE
Sbjct:  676 PAGVLVFLSSYKLLQRAVAIWRKCEVWADLERSKGVIVEEPEAAADFKAAKRRYEEAVDGGPGGRXXXXXXXXXXXVLLAVYRGKMSE 763          
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A7S1R5E9_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R5E9_ALECA)

HSP 1 Score: 95.9 bits (237), Expect = 1.900e-21
Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 1
Query:    1 PSGVLVFLPSYATLRRVGTIWRA-----CDVWRRLERIKGIIVEEPESGAEFKAARRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFNDWKRSSSGSG 366
            P GVL F PS+A L    + W+        VW R+   KG+++ EP        A   Y AA  +  G  AL LAVYRG+MSEG+SFND   RGV+C+G+P+     P + AK  +ND +R+S  SG
Sbjct:   88 PGGVLCFFPSFAALEACASAWQRPEHAPAQVWARMRGAKGLVLVEPRGSDALPEACASYRAAAHSRAG--ALCLAVYRGRMSEGLSFNDDSCRGVICLGVPYPQAVNPAVAAKRRWNDAQRASRPSG 212          
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A7S0C0Q2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0Q2_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.960e-21
Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    7 GVLVFLPSYATLRRVGTIW---------RACDVWRRLERIKGIIVEEPE-SGAEFKAARRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFNDWKR 348
            G+L+FLPSY+ +++    W         R   VW R+++ KG ++ EP  S  +F+ A+R Y   I   G    ++LAV+RGKMSEG+SFND  ARGV+CVG+P+ N     ++AK  +ND +R
Sbjct:   25 GILIFLPSYSFMKKCVRAWNPDFDRSAYRGPSVWDRMKKSKGRVIVEPTGSQDDFEVAKREYIGTIKTKG--KCIILAVFRGKMSEGISFNDDNARGVICVGLPYPNAKDRAVSAKKAYNDEQR 146          
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A1E7FKG8_9STRA (DNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKG8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.670e-21
Identity = 58/128 (45.31%), Postives = 74/128 (57.81%), Query Frame = 1
Query:    7 GVLVFLPSYATLRRVGTIWR-------------ACDVWRRLERIKG-IIVEEPESGAEFKAARRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFNDWKR 348
            G L+F PSY+ L +  T W              A DVW RL R KG +IVE  +S  EF+ AR  Y+  I   G  S +LLAV+RGKMSEG+SFND  AR VLC+G+P+ N     + AK  +ND +R
Sbjct: 1290 GCLIFFPSYSFLNKCITCWNPIGPERYSRFTETAPDVWTRLLRSKGKLIVEPTKSQEEFELARDEYKNTIKETG--SCILLAVFRGKMSEGISFNDDNARAVLCIGMPYPNWHDRGVKAKQAYNDEQR 1415          
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A448ZL79_9STRA (HELICc2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZL79_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 8.770e-21
Identity = 56/125 (44.80%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    7 GVLVFLPSYATLRRVGTIWRAC----------DVWRRLERIKGIIVEEPESGAE-FKAARRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFNDWKR 348
            G LVF PSY+ L++  + W A            VW R+ R KG IV EP    E F++AR  ++  I   G  S +LLAV+RGKMSEG+SFND YAR V+C+G+P  N    +I AK  +ND +R
Sbjct:  250 GCLVFFPSYSLLQKCVSCWNATGYSRFQVSSPQVWNRILRSKGKIVVEPTGSQEDFESARDDFQDTIRETG--SCVLLAVFRGKMSEGISFNDDYARAVICIGMPLPNLIDRRIKAKKXYNDEQR 372          
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A7S0FFG9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FFG9_9DINO)

HSP 1 Score: 94.4 bits (233), Expect = 1.460e-20
Identity = 54/121 (44.63%), Postives = 66/121 (54.55%), Query Frame = 1
Query:    1 PSGVLVFLPSYATLRRVGTIWRACD-----VWRRLERIKGIIVEEPESGAEFKAARRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFNDWKR 348
            P G+L F PS+  L      W+A       VW RL   KG +V EP S A    A   Y AA  +  G  A+ LAVYRGKMSEGVSFND   RGV+C+G+P+     P + AK  +ND  R
Sbjct:   69 PGGILCFFPSFVALEACVATWQAAGGPSGHVWARLRCTKGAVVIEPRSAAALPEACASYAAAACSAHG--AICLAVYRGKMSEGVSFNDGLCRGVICLGVPYPQATDPVVIAKRRWNDAHR 187          
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A0G4FSP7_9ALVE (Helicase ATP-binding domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FSP7_9ALVE)

HSP 1 Score: 95.1 bits (235), Expect = 2.680e-20
Identity = 48/118 (40.68%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    7 GVLVFLPSYATLRRVGTIWRAC-------DVWRRLERIKGIIVEEPESGAEFKAARRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFND 339
            G+LVF PSYA L+    IW           + +RLE  KG ++ +     +    + +++ AI +  G  A+L AVYRGKMSEG+SFND +AR V C+G+P+ N G P++  K +FND
Sbjct: 1193 GMLVFCPSYAFLQNAAKIWNTPYSPATPQTIMQRLENAKGTVLTDDRDAKQSHRVKEQFDRAITS--GEGAVLFAVYRGKMSEGISFNDDFARAVCCIGLPYPNWGSPEVVQKRVFND 1308          
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Match: A0A7R9YYY0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YYY0_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.840e-20
Identity = 51/92 (55.43%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   76 VWRRLERIKG-IIVEEPESGAEFKAARRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNKGCPKINAKMLFNDWKR 348
            VW RL   KG +IVE   S  +F+AAR  Y   I +  GGS +LLAVYRGKMSEGVSFND YARGV+C+G+P  N     I AK  +ND +R
Sbjct:    1 VWDRLIASKGKVIVESTGSQDKFEAARAEYNGTIKS--GGSCVLLAVYRGKMSEGVSFNDDYARGVICIGLPLPNAFDRSIRAKRDYNDEQR 90          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6419.17338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ0_ECTSI1.480e-4567.20Helicase ATP-binding domain-containing protein n=1... [more]
A0A7S4EN76_9STRA1.840e-2245.60Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A6H5JZN2_9PHAE4.720e-2259.09Helicase ATP-binding domain-containing protein n=1... [more]
A0A7S1R5E9_ALECA1.900e-2141.73Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S0C0Q2_9STRA2.960e-2141.13Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1E7FKG8_9STRA5.670e-2145.31DNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP... [more]
A0A448ZL79_9STRA8.770e-2144.80HELICc2 domain-containing protein n=1 Tax=Pseudo-n... [more]
A0A7S0FFG9_9DINO1.460e-2044.63Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A0G4FSP7_9ALVE2.680e-2040.68Helicase ATP-binding domain-containing protein n=1... [more]
A0A7R9YYY0_9STRA2.840e-2055.43Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6419contigF-serratus_M_contig6419:20096..21635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue2.9e-39
Seed eggNOG ortholog2880.D8LEJ0
KEGG koko:K11136,ko:K15362
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1132@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons3
Model size368
Cds size366
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6419.17338.1prot_F-serratus_M_contig6419.17338.1Fucus serratus malepolypeptideF-serratus_M_contig6419 20096..21635 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931983.0733263-CDS-F-serratus_M_contig6419:20095..202271622931983.0733263-CDS-F-serratus_M_contig6419:20095..20227Fucus serratus maleCDSF-serratus_M_contig6419 20096..20227 -
1690964088.5246453-CDS-F-serratus_M_contig6419:20095..202271690964088.5246453-CDS-F-serratus_M_contig6419:20095..20227Fucus serratus maleCDSF-serratus_M_contig6419 20096..20227 -
1622931983.0920446-CDS-F-serratus_M_contig6419:20985..211441622931983.0920446-CDS-F-serratus_M_contig6419:20985..21144Fucus serratus maleCDSF-serratus_M_contig6419 20986..21144 -
1690964088.538406-CDS-F-serratus_M_contig6419:20985..211441690964088.538406-CDS-F-serratus_M_contig6419:20985..21144Fucus serratus maleCDSF-serratus_M_contig6419 20986..21144 -
1622931983.1054313-CDS-F-serratus_M_contig6419:21560..216351622931983.1054313-CDS-F-serratus_M_contig6419:21560..21635Fucus serratus maleCDSF-serratus_M_contig6419 21561..21635 -
1690964088.5479908-CDS-F-serratus_M_contig6419:21560..216351690964088.5479908-CDS-F-serratus_M_contig6419:21560..21635Fucus serratus maleCDSF-serratus_M_contig6419 21561..21635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6419.17338.1

>prot_F-serratus_M_contig6419.17338.1 ID=prot_F-serratus_M_contig6419.17338.1|Name=mRNA_F-serratus_M_contig6419.17338.1|organism=Fucus serratus male|type=polypeptide|length=122bp
PSGVLVFLPSYATLRRVGTIWRACDVWRRLERIKGIIVEEPESGAEFKAA
RRRYEAAIDAPGGGSALLLAVYRGKMSEGVSFNDRYARGVLCVGIPFSNK
GCPKINAKMLFNDWKRSSSGSG
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mRNA from alignment at F-serratus_M_contig6419:20096..21635-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6419.17338.1 ID=mRNA_F-serratus_M_contig6419.17338.1|Name=mRNA_F-serratus_M_contig6419.17338.1|organism=Fucus serratus male|type=mRNA|length=1540bp|location=Sequence derived from alignment at F-serratus_M_contig6419:20096..21635- (Fucus serratus male)
CCGTCCGGCGTCCTGGTGTTTCTGCCATCGTACGCAACTCTTCGAAGGGT TGGGACGATCTGGCGCGCCTGCGATGTGCGGTGACACCCTTTTGTTTGTT GGATCAGTGAAAATTCAGCTCACCGAGGGCGGCTTCCGGACTGTTGACTG TTCCGACGTTTCGATGCCAAAAAGATAACGAAAAACGGGGGGAACATGCG ATCGGTCGCTGATATCAGGCTTTGTGGGGTTGTTCGAGTCGAGGCTGTGT CGTCACGACCTGCATATCTGTTGGTTTTTTTCTCCCGATGTAGAGTCGGG AAAAAAAGCTGGAAACAGACCACGGGGGATATAAACAGAAACAAGCACGT AGCTCAAATTGTGGTCGCGATGTTGCTGCACGCCGGGAATGCTCTTTTTG ATTCTCATAAGCGGTGGATTCACCCTTGACGAAGAGGTTGAGTCGATTTT TCTCGAGTCGATGGTTCGGAACCTCGAATCCTCGTTACAAGGTGTGGAGG CGGCTTGAGCGCATCAAGGGGATCATTGTTGAAGAGCCGGAATCCGGGGC GGAGTTCAAGGCCGCAAGAAGGCGTTACGAGGCGGCGATCGACGCCCCCG GCGGGGGTAGCGCTCTGCTCTTAGCTGTGTACCGCGGGAAAATGAGCGAG GTATGGGTGCAATTTTAAAAGCCACGTTTACAATACTCAACTCCAGTTTT TTTGTTTTTTTTTTCGGGGGTGGGGGCTGGAGGGCTATTATGTCGAGATG GTTTACTTTCATCCCGCTTACTCCTCACTAAAAACAAATGCCGTGGAACC ATCCCCTCACATCTCTTGAAAAATGCGCGATCGATTGCTTTCGATCCCCC CCCCACTCCTCCTTGCGGTTGGCACAACTCCACTTCTCTCGAAAACAAGC CAACCATCCACGTTACTTTGAAAGCCGTCCTCTCTCTCTTGATTATCTTG GCATTGTTTCCCTGCCCCCCGCGCACACCTCGGCACTTCACGCAATGCGT ATTTTAATGTCACCACTTTCTTCCAATGTGGCCATTCCACGGCTCTACGA TACCGATCCCGATCCCATCCACTGCAACATTGCCCGTCCCGCGCCTGTGG TTACCAAGAACCAACTCATCTCTCCCTGTTTCACGCCCCCGTTTTTTTTG TTTTAATTTTCTTTCTACAGCGACACAGGTTGAGTACACTCTTCACACAT TCCGTCAACTCATGGTCGAACTTTGCTTGCTGTGTATTCACCCTACGACG TCTTCCGAACCCGGAAAAACAGAACTTAGAAAGCAGAAAGATCGCTCTGA AGAGATTCGATTTCACGAAGTTCCTCTGTTAAAGATAGACTGCTGTACAA CGAGTGGTTTTCCATTACCCTACGCACTGCTGTACTCGGGGGGGGATCGA TCACGCAGGGCGTAAGCTTCAATGACCGGTACGCCAGAGGTGTGCTTTGC GTGGGCATTCCATTCTCCAACAAAGGCTGCCCAAAGATAAACGCGAAAAT GCTCTTCAACGACTGGAAAAGAAGCAGCAGCGGCAGCGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6419:20096..21635-

>mRNA_F-serratus_M_contig6419.17338.1 ID=mRNA_F-serratus_M_contig6419.17338.1|Name=mRNA_F-serratus_M_contig6419.17338.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig6419:20096..21635- (Fucus serratus male)
CCGTCCGGCGTCCTGGTGTTTCTGCCATCGTACGCAACTCTTCGAAGGGT
TGGGACGATCTGGCGCGCCTGCGATCCGTCCGGCGTCCTGGTGTTTCTGC
CATCGTACGCAACTCTTCGAAGGGTTGGGACGATCTGGCGCGCCTGCGAT
GTGTGGAGGCGGCTTGAGCGCATCAAGGGGATCATTGTTGAAGAGCCGGA
ATCCGGGGCGGAGTTCAAGGCCGCAAGAAGGCGTTACGAGGCGGCGATCG
ACGCCCCCGGCGGGGGTAGCGCTCTGCTCTTAGCTGTGTACCGCGGGAAA
ATGAGCGAGGTGTGGAGGCGGCTTGAGCGCATCAAGGGGATCATTGTTGA
AGAGCCGGAATCCGGGGCGGAGTTCAAGGCCGCAAGAAGGCGTTACGAGG
CGGCGATCGACGCCCCCGGCGGGGGTAGCGCTCTGCTCTTAGCTGTGTAC
CGCGGGAAAATGAGCGAGGGCGTAAGCTTCAATGACCGGTACGCCAGAGG
TGTGCTTTGCGTGGGCATTCCATTCTCCAACAAAGGCTGCCCAAAGATAA
ACGCGAAAATGCTCTTCAACGACTGGAAAAGAAGCAGCAGCGGCAGCGGC
GGCGTAAGCTTCAATGACCGGTACGCCAGAGGTGTGCTTTGCGTGGGCAT
TCCATTCTCCAACAAAGGCTGCCCAAAGATAAACGCGAAAATGCTCTTCA
ACGACTGGAAAAGAAGCAGCAGCGGCAGCGGC
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