mRNA_F-serratus_M_contig641.17331.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig641.17331.1
Unique NamemRNA_F-serratus_M_contig641.17331.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig641.17331.1 vs. uniprot
Match: D7FXF9_ECTSI (Anaphase-promoting complex subunit 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF9_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 4.300e-62
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 1 
Query:    1 RWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGHCNHTFHMHCVLKHLQFATQQNRQQQCPLCRQEWQFREAQPAT 258
            RWHGVAVWKWDVN+DVCGICRLAFDACCPDCTVPGD+CSPVWG CNHTFHMHCVLKHLQFATQQNR QQCPLCRQEWQFREAQPAT
Sbjct:   15 RWHGVAVWKWDVNEDVCGICRLAFDACCPDCTVPGDNCSPVWGQCNHTFHMHCVLKHLQFATQQNRPQQCPLCRQEWQFREAQPAT 100
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BLAST of mRNA_F-serratus_M_contig641.17331.1 vs. uniprot
Match: A0A835ZF45_9STRA (Anaphase-promoting complex subunit 11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF45_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.360e-40
Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:    1 RWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGHCNHTFHMHCVLKHLQFATQQNRQQQCPLCRQEWQFREA 246
            RWHGVAVWKWDV DDVCGICR+A+DACCPDCT+PGD+C PVWG CNH FH+HC +K L    Q      CP+CR++++F+E+
Sbjct:    7 RWHGVAVWKWDVEDDVCGICRMAYDACCPDCTMPGDNCPPVWGECNHAFHIHCAMKWLASQAQAGGGAPCPMCRRDFKFKES 88
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BLAST of mRNA_F-serratus_M_contig641.17331.1 vs. uniprot
Match: H3G666_PHYRM (Anaphase-promoting complex subunit 11 n=19 Tax=Oomycota TaxID=4762 RepID=H3G666_PHYRM)

HSP 1 Score: 131 bits (329), Expect = 4.440e-38
Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:    1 RWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGHCNHTFHMHCVLKHLQFATQQNRQQQCPLCRQEWQFR 240
            RWHGVA W W V+++ CGICR AF+ACCPDCT+PGD C PVWG CNH FHMHC++K L+    Q+ +Q CP+CRQ+W+FR
Sbjct:    9 RWHGVATWTWGVDEECCGICRYAFEACCPDCTMPGDGCPPVWGACNHAFHMHCLMKWLESL--QSMRQHCPMCRQDWKFR 86
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BLAST of mRNA_F-serratus_M_contig641.17331.1 vs. uniprot
Match: A0A6A3FJP8_9STRA (Anaphase-promoting complex subunit 11 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FJP8_9STRA)

HSP 1 Score: 131 bits (329), Expect = 6.540e-38
Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:    1 RWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGHCNHTFHMHCVLKHLQFATQQNRQQQCPLCRQEWQFR 240
            RWHGVA WKW V+++ CGICR AF+ACCPDCT+PGD C PVWG C H FHMHC++K L+    Q+ +Q CP+CRQ+W+FR
Sbjct:   22 RWHGVATWKWGVDEECCGICRYAFEACCPDCTMPGDGCPPVWGACTHAFHMHCLMKWLESL--QSMRQHCPMCRQDWKFR 99
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BLAST of mRNA_F-serratus_M_contig641.17331.1 vs. uniprot
Match: W7T4Y4_9STRA (Anaphase-promoting complex subunit 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4Y4_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.500e-37
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    1 RWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGHCNHTFHMHCVLKHLQFATQQNRQQQCPLCRQEWQFR 240
            RWH VA W+WDVND+ CGIC  AF+ACCPDC +PGD C PVWG CNH FHMHC++K L      N+Q  CP CRQ+W+FR
Sbjct:    7 RWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGGCNHAFHMHCIMKWLNSQQNANKQT-CPACRQKWEFR 85
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BLAST of mRNA_F-serratus_M_contig641.17331.1 vs. uniprot
Match: G4YWI2_PHYSP (Anaphase-promoting complex subunit 11 n=2 Tax=Phytophthora TaxID=4783 RepID=G4YWI2_PHYSP)

HSP 1 Score: 129 bits (324), Expect = 3.070e-37
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    1 RWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGHCNHTFHMHCVLKHLQFATQQNRQQQCPLCRQEWQFR 240
            RWHGVA W W V+++ CGICR AF+ACCPDC +PGD C PVWG CNH FHMHC++K L+    Q+ +Q CP+CRQ+W+FR
Sbjct:   15 RWHGVATWTWGVDEECCGICRYAFEACCPDCAMPGDGCPPVWGACNHAFHMHCLMKWLESL--QSMRQHCPMCRQDWKFR 92
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BLAST of mRNA_F-serratus_M_contig641.17331.1 vs. uniprot
Match: A7SJC0_NEMVE (Anaphase-promoting complex subunit 11 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SJC0_NEMVE)

HSP 1 Score: 128 bits (321), Expect = 7.820e-37
Identity = 54/81 (66.67%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    1 RWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGHCNHTFHMHCVLKHLQFATQQNRQQQCPLCRQEWQFRE 243
            RW GVA WKW  NDD CGICR+ FD CCPDC VPGD C  VWG C+H FHMHC+LK L     Q  QQ CP+CRQEWQF+E
Sbjct:   12 RWVGVATWKWMANDDNCGICRMPFDGCCPDCKVPGDDCPLVWGRCSHVFHMHCILKWL---NSQLHQQLCPMCRQEWQFKE 89
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BLAST of mRNA_F-serratus_M_contig641.17331.1 vs. uniprot
Match: A0A6A4K288_APOLU (Anaphase-promoting complex subunit 11 n=6 Tax=Cimicomorpha TaxID=33354 RepID=A0A6A4K288_APOLU)

HSP 1 Score: 127 bits (319), Expect = 1.360e-36
Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    4 WHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGHCNHTFHMHCVLKHLQFATQQNRQQQCPLCRQEWQFRE 243
            W+GVA W+W  NDD CGICRLAFD CCPDC VPGD C  VWG C+H FH+HC++K L     Q   QQCP+CRQEW+FRE
Sbjct:    8 WNGVATWRWLANDDTCGICRLAFDGCCPDCKVPGDECPLVWGQCSHCFHIHCIMKWL---NSQQVNQQCPMCRQEWKFRE 84
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BLAST of mRNA_F-serratus_M_contig641.17331.1 vs. uniprot
Match: UPI0009E5C155 (anaphase-promoting complex subunit 11-like n=2 Tax=Scleractinia TaxID=6125 RepID=UPI0009E5C155)

HSP 1 Score: 126 bits (317), Expect = 3.090e-36
Identity = 52/81 (64.20%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    1 RWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGHCNHTFHMHCVLKHLQFATQQNRQQQCPLCRQEWQFRE 243
             W GVA W+W  NDD CGICR+AFD CCPDC +PGD C  VWG C+H FHMHC+LK L     Q  QQ CP+CRQEWQF+E
Sbjct:   11 EWIGVATWRWVANDDNCGICRMAFDGCCPDCKIPGDDCPLVWGRCSHVFHMHCILKWL---NSQLHQQLCPMCRQEWQFKE 88
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BLAST of mRNA_F-serratus_M_contig641.17331.1 vs. uniprot
Match: UPI000F553B4F (anaphase-promoting complex subunit 11-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F553B4F)

HSP 1 Score: 127 bits (318), Expect = 3.710e-36
Identity = 52/81 (64.20%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    1 RWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGHCNHTFHMHCVLKHLQFATQQNRQQQCPLCRQEWQFRE 243
             W GVA W+W  NDD CGICR+AFD CCPDC +PGD C  VWG C+H FHMHC+LK L     Q  QQ CP+CRQEWQF+E
Sbjct:   29 EWTGVATWRWVANDDNCGICRMAFDGCCPDCKIPGDDCPLVWGRCSHVFHMHCILKWL---NSQLHQQLCPMCRQEWQFKE 106
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig641.17331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXF9_ECTSI4.300e-6295.35Anaphase-promoting complex subunit 11 n=1 Tax=Ecto... [more]
A0A835ZF45_9STRA2.360e-4064.63Anaphase-promoting complex subunit 11 n=1 Tax=Trib... [more]
H3G666_PHYRM4.440e-3863.75Anaphase-promoting complex subunit 11 n=19 Tax=Oom... [more]
A0A6A3FJP8_9STRA6.540e-3863.75Anaphase-promoting complex subunit 11 n=3 Tax=Phyt... [more]
W7T4Y4_9STRA2.500e-3763.75Anaphase-promoting complex subunit 11 n=2 Tax=Mono... [more]
G4YWI2_PHYSP3.070e-3762.50Anaphase-promoting complex subunit 11 n=2 Tax=Phyt... [more]
A7SJC0_NEMVE7.820e-3766.67Anaphase-promoting complex subunit 11 n=1 Tax=Nema... [more]
A0A6A4K288_APOLU1.360e-3665.00Anaphase-promoting complex subunit 11 n=6 Tax=Cimi... [more]
UPI0009E5C1553.090e-3664.20anaphase-promoting complex subunit 11-like n=2 Tax... [more]
UPI000F553B4F3.710e-3664.20anaphase-promoting complex subunit 11-like n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig641contigF-serratus_M_contig641:199255..199942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.1
Seed ortholog evalue2.8e-47
Seed eggNOG ortholog2880.D7FXF9
Preferred nameANAPC11
KEGG koko:K03358,ko:K14972
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005730,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009790,GO:0009792,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016043,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0022402,GO:0022414,GO:0030071,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034450,GO:0036211,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045132,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046872,GO:0046914,GO:0048285,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051321,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0061630,GO:0061659,GO:0062033,GO:0065007,GO:0070013,GO:0070647,GO:0070979,GO:0071704,GO:0071840,GO:0090068,GO:0097602,GO:0098813,GO:0140013,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903046,GO:1903052,GO:1903364,GO:1905818,GO:1905820,GO:1990234,GO:2001252
EggNOG free text desc.cullin family protein binding
EggNOG OGsCOG5194@1,KOG1493@2759
Ec32 ortholog descriptionPutative subunit of the Anaphase Promoting Complex
Ec32 orthologEc-07_003050.1
COG Functional cat.DO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931982.315001-CDS-F-serratus_M_contig641:199254..1993751622931982.315001-CDS-F-serratus_M_contig641:199254..199375Fucus serratus maleCDSF-serratus_M_contig641 199255..199375 +
1690964088.0848656-CDS-F-serratus_M_contig641:199254..1993751690964088.0848656-CDS-F-serratus_M_contig641:199254..199375Fucus serratus maleCDSF-serratus_M_contig641 199255..199375 +
1622931982.345993-CDS-F-serratus_M_contig641:199790..1999421622931982.345993-CDS-F-serratus_M_contig641:199790..199942Fucus serratus maleCDSF-serratus_M_contig641 199791..199942 +
1690964088.0986454-CDS-F-serratus_M_contig641:199790..1999421690964088.0986454-CDS-F-serratus_M_contig641:199790..199942Fucus serratus maleCDSF-serratus_M_contig641 199791..199942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig641.17331.1prot_F-serratus_M_contig641.17331.1Fucus serratus malepolypeptideF-serratus_M_contig641 199255..199942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig641.17331.1

>prot_F-serratus_M_contig641.17331.1 ID=prot_F-serratus_M_contig641.17331.1|Name=mRNA_F-serratus_M_contig641.17331.1|organism=Fucus serratus male|type=polypeptide|length=91bp
RWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGHCNHTFH
MHCVLKHLQFATQQNRQQQCPLCRQEWQFREAQPATKRDS*
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mRNA from alignment at F-serratus_M_contig641:199255..199942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig641.17331.1 ID=mRNA_F-serratus_M_contig641.17331.1|Name=mRNA_F-serratus_M_contig641.17331.1|organism=Fucus serratus male|type=mRNA|length=688bp|location=Sequence derived from alignment at F-serratus_M_contig641:199255..199942+ (Fucus serratus male)
AGGTGGCACGGAGTTGCGGTGTGGAAATGGGACGTGAACGACGACGTGTG
CGGTATCTGCCGGCTAGCCTTTGATGCCTGCTGTCCAGACTGCACGGTCC
CTGGAGACAGCTGCTCACCAGGTGAACCCCCGAAAGGGTCAACAGAATAC
ACGTCTACTCCTCTGTAAAAACAAAACCACCGAAGGCGTTTTCTTAAAGA
TCGAGTGGCGTATTCGGGCGGCCGCTTCAGGCGTTGTAAGTGGTTAGTTT
TTAAAATTTGGTGCGGAGCTCCTTAAAGCAAGAGAGATCTTCCCAAACTG
CCCCTCCTCCATGACCGACACTCGCCCATTATTCGTTTTTGATTGCGCGA
CAACGCCGGTTGCCGTCTACGCGGTACAAGTAATTCGGGGCAGTCTCGTA
TGGCTCATAACACTTTTGAACCCGAAGAATTATGACTGTTAAACCTTTCT
TCCGCGAAATAGCCCCTATTCCCCCTCCCTCCCTTCGCTTCCCCCCCCCA
AAACGCGCTTTGCTCCTGCTGCTGCTGCTGCCATAGTGTGGGGGCACTGC
AACCATACCTTCCATATGCACTGCGTCCTGAAGCACCTACAGTTCGCGAC
GCAGCAGAATCGGCAACAGCAGTGCCCGCTGTGTCGCCAGGAGTGGCAGT
TTCGAGAGGCGCAGCCGGCTACTAAGCGAGACAGCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig641:199255..199942+

>mRNA_F-serratus_M_contig641.17331.1 ID=mRNA_F-serratus_M_contig641.17331.1|Name=mRNA_F-serratus_M_contig641.17331.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig641:199255..199942+ (Fucus serratus male)
AGGTGGCACGGAGTTGCGGTGTGGAAATGGGACGTGAACGACGACGTGTG
CGGTATCTGCCGGCTAGCCTTTGATGCCTGCTGTCCAGACTGCACGGTCC
CTGGAGACAGCTGCTCACCAGAGGTGGCACGGAGTTGCGGTGTGGAAATG
GGACGTGAACGACGACGTGTGCGGTATCTGCCGGCTAGCCTTTGATGCCT
GCTGTCCAGACTGCACGGTCCCTGGAGACAGCTGCTCACCAGTGTGGGGG
CACTGCAACCATACCTTCCATATGCACTGCGTCCTGAAGCACCTACAGTT
CGCGACGCAGCAGAATCGGCAACAGCAGTGCCCGCTGTGTCGCCAGGAGT
GGCAGTTTCGAGAGGCGCAGCCGGCTACTAAGCGAGACAGCTGATGTGGG
GGCACTGCAACCATACCTTCCATATGCACTGCGTCCTGAAGCACCTACAG
TTCGCGACGCAGCAGAATCGGCAACAGCAGTGCCCGCTGTGTCGCCAGGA
GTGGCAGTTTCGAGAGGCGCAGCCGGCTACTAAGCGAGACAGCTGA
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