mRNA_F-serratus_M_contig64.17307.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig64.17307.1 vs. uniprot
Match: A0A7S0SGK9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SGK9_9CHLO) HSP 1 Score: 108 bits (271), Expect = 4.090e-23 Identity = 87/249 (34.94%), Postives = 133/249 (53.41%), Query Frame = 3
Query: 93 LRQPFGSSASIKLLNRGASQEPSFGAGNHLEAMAVAMQRFLVANKDPTATLPLQGDEAVDDMRAILAALKSGQPRKNPRIMLLLLKVRSGQILKVLMRKQGNRRSLGREGVRAVTDLLSSACLDACISSECANVALNMCYDSENVRHFVELGGLPALEPLIRSGHEQLKAS-SSYGLGALQSVCFDKIGREATRGETFYSGMVGAVVRLLGDA--SPRVQARALGTVHNLSTDARSIGIIREEGGMSLL 830
L P + L + G +Q H A+A+ ++ F+ AN+DP + P D+ D M + + + + + + L LK LK+L RKQ NR+S GR G+ AV LL + + ++ E ANV LN+CY+ ENV + GGL EPL+R E+ + GA+QS+CF + GR R G V A++RLLG+ + +VQ RA+G +HN+S+DA SI +IR + G+ L+
Sbjct: 14 LMSPTSADLHALLTSTGGAQR--MPRARHDAALAM-LRDFVTANEDPRVS-PNYKDDRPDQMDGLFTLMSAPECAADEDLALHALKA-----LKILSRKQENRQSFGRRGLNAVLRLLVAP-PSSRVAGEGANVILNVCYEKENVDAILMCGGL---EPLVRFLGERTDPDLQANAAGAIQSICFQEKGRARVRD---LDG-VPAMLRLLGECRGNVKVQTRAIGAIHNMSSDADSIRLIRAQEGIPLV 245
BLAST of mRNA_F-serratus_M_contig64.17307.1 vs. uniprot
Match: C1EIP6_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EIP6_MICCC) HSP 1 Score: 95.9 bits (237), Expect = 5.850e-18 Identity = 78/238 (32.77%), Postives = 114/238 (47.90%), Query Frame = 3
Query: 147 SQEPSFGAGNHLEAMAVAMQRFLVANKDPTATLPLQGDEAVDDMRAILAALKSGQPRKNPRIMLLLLKVRSGQILKVLMRKQGNRRSLGREGVRAVTDL-LSSACLDACISSECANVALNMCYDSENVRHFVELGGLPALEPLIRSGHEQLKASSSYGLGALQSVCFDKIGREATRGETFYSGMVGAVVRL------------LGDASPRVQARALGTVHNLSTDARSIGIIREEGGM 821
SQ S E +A ++ F+ AN+D A+ L+ DE D++ I + L G + + LL LK LK+L RK+ NRR GRE RAV L L+ +++E ANV LN CY+ ENV H +E GG+ L + E + S+ GA+QSVCF GR R + +V + L D +AR +G +HN+S D +I ++R G+
Sbjct: 17 SQRASGPLSGRREQVARTLREFVDANEDARASPNLR-DERRDELGGITSLLTDGDLPGDQDLALLALKT-----LKILSRKEDNRRRFGRELCRAVVRLALTHPRASHAVTAEGANVVLNACYEKENVEHVLECGGVQPLVRRVADTGESWRCRSAAA-GAVQSVCFQAPGRCRVRDCDGVAALVALMKELDRREGGTRDSSFTDDERSMCRARVVGALHNVSADDDAIRLVRLSDGV 247
BLAST of mRNA_F-serratus_M_contig64.17307.1 vs. uniprot
Match: A0A7S0IGD7_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IGD7_MICPS) HSP 1 Score: 91.7 bits (226), Expect = 1.900e-16 Identity = 78/240 (32.50%), Postives = 113/240 (47.08%), Query Frame = 3
Query: 147 SQEPSFGAGNHLEAMAVAMQRFLVANKDPTATLPLQGDEAVDDMRAILAALKSGQPRKNPRIMLLLLKVRSGQILKVLMRKQGNRRSLGREGVRAVTDL-LSSACLDACISSECANVALNMCYDSENVRHFVELGGLPALEPLIRSGHEQLKASSSYGLGALQSVCFDKIGREATRGETFYSGMV--------------GAVVRLLGDASPRVQARALGTVHNLSTDARSIGIIREEGGM 821
SQ S E +A ++ F+ AN+ A+ L+ DE D++ I + L G + + LL LK LK+L RK+ NRR GRE RAV L L+ +++E ANV LN CY+ ENV + +E GG+ L + E L+ S+ GA+QSVCF GR R + +V G+ R D +AR +G +HN+ D +I IR G+
Sbjct: 44 SQRASGPLSGRREQVARTLREFVDANEGARASPNLR-DERRDELGGITSLLTDGDLPGDQDLALLALKT-----LKILSRKEDNRRRFGRELCRAVVRLALTHPRASHAVTAEGANVVLNACYEKENVEYVLECGGVEPLVRRVADTGETLRCRSAAA-GAVQSVCFQAPGRCRVRDCDGVAALVALMKELDRASMPRDGSAGRFTDDERSMCRARVVGALHNVGADDDAIRAIRACDGI 276
BLAST of mRNA_F-serratus_M_contig64.17307.1 vs. uniprot
Match: A0A5B8MZ58_9CHLO (ARM repeat domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MZ58_9CHLO) HSP 1 Score: 89.7 bits (221), Expect = 4.350e-16 Identity = 54/146 (36.99%), Postives = 85/146 (58.22%), Query Frame = 3
Query: 369 LKVLMRKQGNRRSLGREGVRAVTDLLSSACLDACISSECANVALNMCYDSENVRHFVELGGLPALEPLIRSGHEQLKASSSYGLGALQSVCFDKIGREATRGETFYSGMVGAVVRLLGDASPRVQARALGTVHNLSTDARSIGIIR 806
LK+L RKQ NRR++ G + + +++ECANV LN CY+ +NV F+ GG+ LE + S ++A+++ GALQSV + + GR+ G++ +V LL P+V+ARA+G +HNLS++ +I IIR
Sbjct: 106 LKILSRKQRNRRAIVLTGFKHLASCADFVRNVPTLAAECANVLLNFCYERQNVGLFLSCGGVKVLETYLESEDRGVQANAA---GALQSVSYHEEGRKELLAS---EGLLPRIVNLLASQEPKVRARAVGALHNLSSEPGTIRIIR 245
BLAST of mRNA_F-serratus_M_contig64.17307.1 vs. uniprot
Match: A0A836CNB1_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB1_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 2.430e-15 Identity = 75/202 (37.13%), Postives = 97/202 (48.02%), Query Frame = 3
Query: 114 SASIKLLNRGASQEPSFGAGNHLEAMAVAMQRFLVANKDPTATLPLQGDEAVDDMRAILAALKSGQPRKNPRIMLLLLKVRSGQILKVLMRKQGNRRSLGREGVRAVTDLLSSACLDACISSECANVALNMCYDSENVRHFVELGGLPALEPLIRSGHEQLKASSSYGLGALQSVCFDKIGREATRGETFYSGMVGAVVRLL 719
SA + L + A+ S G+ A+ FL N DP + L E VDD + A+ G +P +L LL+V LK LMRK NRR+ G V LLS+ L A + ECANV LN+CY++ NV F + GG+ L ++ A LGALQS+CFD GRE R SG V V LL
Sbjct: 3 SAGVDLNDINAALRRSPGS-----CFTTAVDAFLRCNADPARSPNLNFPE-VDDTVLLYNAVAVGPGAHSPVRLLSLLRV-----LKYLMRKPANRRATGPTCAATVAMLLSNEALSADCACECANVVLNLCYETANVGLFCKHGGMAGLLRMLSPSCSV--ALHVAALGALQSLCFDAAGRERAR----VSGAVDLVAALL 187
BLAST of mRNA_F-serratus_M_contig64.17307.1 vs. uniprot
Match: A0A7S3DH06_9EUKA (Hypothetical protein n=3 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DH06_9EUKA) HSP 1 Score: 75.5 bits (184), Expect = 3.300e-11 Identity = 51/156 (32.69%), Postives = 82/156 (52.56%), Query Frame = 3
Query: 180 LEAMAVAMQRFLVANKDPTATLPLQGDEAVDDMRAILAALKSGQPRKNPRIMLLLLKVRSGQILKVLMRKQGNRRSLGREGVRAVTDLLSSACLDACISS--------------ECANVALNMCYDSENVRHFVELGGLPALEPLIRSGHEQLKAS 605
LE + M +F++AN+DP+++ + E DDM +++ + + + +L LK+ L+++ RK+ NRR++ E VRAV +L LD + S E A+ LN+CY+ ENV FV+ GG L PL+ S E+L AS
Sbjct: 75 LETLKPQMNKFILANEDPSSSPNFEESEQQDDMNGLVSCFQLLPYLSDDDVSVLALKM-----LRIVARKEVNRRAVDGEVVRAVLSILIKKGLDGKVGSTDPGVRPQARAIVCEAASCMLNICYEKENVMLFVQHGGTEVLCPLLASADEELVAS 225
BLAST of mRNA_F-serratus_M_contig64.17307.1 vs. uniprot
Match: A0A3P3YJC6_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YJC6_PLABS) HSP 1 Score: 71.2 bits (173), Expect = 4.570e-10 Identity = 63/210 (30.00%), Postives = 106/210 (50.48%), Query Frame = 3
Query: 189 MAVAMQRFLVANKDPTATLPLQGDEAVDDMRAILAALKSGQPRKNPRIMLLLLKVRSGQILKVLMRKQGNRRSLGREGVRAVTDLLSSACLDACISSECANVALNMCYDSENVRHFVELGGLPALEPLIRSGHEQLKASSSYGLGALQSVCFDKIGREATRGETFYSGMVGAVVRLLGDAS----PRVQARALGTVHNLSTDARSIGIIR 806
+A AM+ F+ N P ++ L DD+ A ++ + + + P + L S ILK+L RK NR G + AV +S++ +++ CANV +N C++ V H V L G+P + L+ H + +++ G L+SV ++ GR+A + + +V LL PRV ARA+ T+HNL+ D ++IG +R
Sbjct: 11 VADAMRAFVHDNALPESSPYLLASLPPDDVDAFVSVVV--RVWRCPDSVAEDLLQSSLNILKILCRKDCNRFQFGVRAIGAVVAAMSNSTSMEVLAA-CANVLMNACHNRSCVDHLVALNGVPGIVQLLECKHAGVVCAAA---GVLRSVACERTGRQAI----LQTRAIPLLVPLLSAPQEGPIPRVCARAIATLHNLTCDHQAIGQLR 210
BLAST of mRNA_F-serratus_M_contig64.17307.1 vs. uniprot
Match: A0A2K1L8Q7_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L8Q7_PHYPA) HSP 1 Score: 57.0 bits (136), Expect = 3.260e-5 Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 3
Query: 369 LKVLMRKQGNRRSLGREGVRAVTDLLSSACLDACISSECANVALNMCYDSENVRHFVELGGLPALEPLIRSGHEQL 596
LKVL RK+ NR++LG++ + + LS +D I +E ANV LN+CY+ +NVR + GG L + S E+L
Sbjct: 48 LKVLSRKETNRKALGQKAIAQLLKHLSDHSVDTKILAEGANVVLNVCYERDNVRALLACGGASTLVEFLTSKDEEL 123 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig64.17307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig64.17307.1 >prot_F-serratus_M_contig64.17307.1 ID=prot_F-serratus_M_contig64.17307.1|Name=mRNA_F-serratus_M_contig64.17307.1|organism=Fucus serratus male|type=polypeptide|length=355bp MMTESTLDGINRLLRQPFGSSASIKLLNRGASQEPSFGAGNHLEAMAVAMback to top mRNA from alignment at F-serratus_M_contig64:275142..287122+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig64.17307.1 ID=mRNA_F-serratus_M_contig64.17307.1|Name=mRNA_F-serratus_M_contig64.17307.1|organism=Fucus serratus male|type=mRNA|length=11981bp|location=Sequence derived from alignment at F-serratus_M_contig64:275142..287122+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig64:275142..287122+ >mRNA_F-serratus_M_contig64.17307.1 ID=mRNA_F-serratus_M_contig64.17307.1|Name=mRNA_F-serratus_M_contig64.17307.1|organism=Fucus serratus male|type=CDS|length=2130bp|location=Sequence derived from alignment at F-serratus_M_contig64:275142..287122+ (Fucus serratus male)back to top |