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Homology
BLAST of mRNA_F-serratus_M_contig64.17304.1 vs. uniprot
Match: D7G7E0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7E0_ECTSI) HSP 1 Score: 170 bits (431), Expect = 7.740e-50 Identity = 87/145 (60.00%), Postives = 106/145 (73.10%), Query Frame = 2
Query: 176 MSRPEARAAAKTMYDHQIPEMNPDVLRQAMELGPAEKTATTHQKLVPDDSELVVSKAPRPLPMDRSRVPTTANEVEETKGLLTQTQLAEVLKRLVPPSEISSPELKQSVVGDFHISEDSAAILARYYRAPDVRMYDDVMTARWRW 610
MSRP+A+AAAK MYD Q+P+MN D+LRQAM +GP K THQKLVPD SE+V SK PRPLP DR+R + EV+ KGLLTQTQLA L+R V S P ++ +FH+SE+ AA+L RY RAPD+RMY+DVMTARW W
Sbjct: 1 MSRPDAQAAAKKMYDQQVPDMNADILRQAMAMGPVGKAELTHQKLVPDASEMVTSKTPRPLPKDRTRAVAKSGEVDAKKGLLTQTQLAAFLERRVANGAGSPPPA--GLLEEFHVSEEDAAVLLRYCRAPDIRMYEDVMTARWHW 143
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-04_003180.1 |
| Exons | 4 |
| Model size | 808 |
| Cds size | 669 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931975.2601163-UTR-F-serratus_M_contig64:252429..252445 | 1622931975.2601163-UTR-F-serratus_M_contig64:252429..252445 | Fucus serratus male | UTR | F-serratus_M_contig64 252430..252445 + |
| 1690964084.4016805-UTR-F-serratus_M_contig64:252429..252445 | 1690964084.4016805-UTR-F-serratus_M_contig64:252429..252445 | Fucus serratus male | UTR | F-serratus_M_contig64 252430..252445 + |
| 1622931975.335576-UTR-F-serratus_M_contig64:258661..258784 | 1622931975.335576-UTR-F-serratus_M_contig64:258661..258784 | Fucus serratus male | UTR | F-serratus_M_contig64 258662..258784 + |
| 1690964084.4615023-UTR-F-serratus_M_contig64:258661..258784 | 1690964084.4615023-UTR-F-serratus_M_contig64:258661..258784 | Fucus serratus male | UTR | F-serratus_M_contig64 258662..258784 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931975.2748713-CDS-F-serratus_M_contig64:252445..252596 | 1622931975.2748713-CDS-F-serratus_M_contig64:252445..252596 | Fucus serratus male | CDS | F-serratus_M_contig64 252446..252596 + |
| 1690964084.4125004-CDS-F-serratus_M_contig64:252445..252596 | 1690964084.4125004-CDS-F-serratus_M_contig64:252445..252596 | Fucus serratus male | CDS | F-serratus_M_contig64 252446..252596 + |
| 1622931975.2885973-CDS-F-serratus_M_contig64:257470..257607 | 1622931975.2885973-CDS-F-serratus_M_contig64:257470..257607 | Fucus serratus male | CDS | F-serratus_M_contig64 257471..257607 + |
| 1690964084.4232872-CDS-F-serratus_M_contig64:257470..257607 | 1690964084.4232872-CDS-F-serratus_M_contig64:257470..257607 | Fucus serratus male | CDS | F-serratus_M_contig64 257471..257607 + |
| 1622931975.3038917-CDS-F-serratus_M_contig64:258065..258214 | 1622931975.3038917-CDS-F-serratus_M_contig64:258065..258214 | Fucus serratus male | CDS | F-serratus_M_contig64 258066..258214 + |
| 1690964084.4320812-CDS-F-serratus_M_contig64:258065..258214 | 1690964084.4320812-CDS-F-serratus_M_contig64:258065..258214 | Fucus serratus male | CDS | F-serratus_M_contig64 258066..258214 + |
| 1622931975.318002-CDS-F-serratus_M_contig64:258429..258661 | 1622931975.318002-CDS-F-serratus_M_contig64:258429..258661 | Fucus serratus male | CDS | F-serratus_M_contig64 258430..258661 + |
| 1690964084.4408875-CDS-F-serratus_M_contig64:258429..258661 | 1690964084.4408875-CDS-F-serratus_M_contig64:258429..258661 | Fucus serratus male | CDS | F-serratus_M_contig64 258430..258661 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig64.17304.1 >prot_F-serratus_M_contig64.17304.1 ID=prot_F-serratus_M_contig64.17304.1|Name=mRNA_F-serratus_M_contig64.17304.1|organism=Fucus serratus male|type=polypeptide|length=223bp
MGNSASKTGANVSRVARAMTKADPKGKAPTAGTLRSSGEGDAVKNFKPTK VVEMSRPEARAAAKTMYDHQIPEMNPDVLRQAMELGPAEKTATTHQKLVP DDSELVVSKAPRPLPMDRSRVPTTANEVEETKGLLTQTQLAEVLKRLVPP SEISSPELKQSVVGDFHISEDSAAILARYYRAPDVRMYDDVMTARWRWKS TTDMTRKAVEILPQEARGVPKS* back to topmRNA from alignment at F-serratus_M_contig64:252430..258784+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig64.17304.1 ID=mRNA_F-serratus_M_contig64.17304.1|Name=mRNA_F-serratus_M_contig64.17304.1|organism=Fucus serratus male|type=mRNA|length=6355bp|location=Sequence derived from alignment at F-serratus_M_contig64:252430..258784+ (Fucus serratus male) GCAAAATCTCCTGGAGATGGGAAACTCTGCGAGTAAGACTGGAGCGAATG
TCTCCCGGGTGGCACGAGCGATGACCAAAGCAGACCCAAAAGGAAAGGCT
CCCACTGCAGGAACATTGCGTTCATCGGGAGAAGGAGATGCTGTCAAGAA
TTTCAAGCCGACGAAAGGTATTCTAATATGTAGTCGGATCCAAGTAAGAG
ATCGTCCACGTGGGAGCAGCTCGAGTTAGTCATCGAGTACAAACACGCAA
TTCAAACGCCATGTGAACTCTGACTGGGACGTTCTCGCGGTGTTGTTTAC
AGACGCTGGAGTCGTTCTAGAAACAAACCCGTACGTACAACTAAATATCA
CGAACGGCAGCTCTATAGATCTACAGCATAATAGCACGAGCTCCATTTCA
CGTACGGGTACTTATTTGTGTGTACATAACTCGTATCCGTGCTACAAAAC
GTTAATGTACGGATAACAATAGCTCTATTTCTATACAGCCAGTGTGCAGT
AGCTATAATCGTTCCACTACTGTGTTGGTCCTCGCAGAGCAGAGGTTTTG
TCTTTGCAACCAATGATTCCACCTAACCGTTTTGACATTTTCCCCCCTGA
CTGGGGGATGCTCAGAAGGTCTACATGCGGTTCAGATTTTTCTTTCAACA
CCTTCTCAAGAGAACATTGGTGCATTTCTGCGGGACCTACGATAGTCAGC
GCGAAAGCTAATAATTGCCTCAAACGGCACGCCCCTCCCCCCTCTCATTC
GATGCGCAAGATATTAAAAAATACTCGCACACTCTGCAACAAATTTCAAC
AGATTACTGTGCCTGGCATGTACCTGGTACGTACCAGGTACTCTGTGTCT
GCAGCCCCACTTCTACTCCGAATGCCTACCTGTACAAATGTTCGTGCAGA
CTCTTAACTGTGGTATAATCCGACCCACCACGTAATAATCCTGCTCGTCC
AGCCAACGCCGACATTGCCCTCGATGGTTCTAGTTGAGTAATACTTCTCG
CGCTCCTGGTGGGCTAGTCTCGGTCATGGAGATGAACGCCTCCGCTGCGG
CACTCACGGCAAGTTTTGCTGCAACGGCCTCTGCTCTCCCGGTCGCGCAA
ATGTTTGGGCGTACGTACGCTGGTTTTAGCTGATGAGAGCCTTGTTGTGG
ACACTTGTACTCCACCAACACAACATTCATGCCTCCTAGAAAGCGCTCAC
GAATGAACGATCCGTGTGGACCCTTGTACTCCATCAACGCAACACTCGCA
CTTCCCAGAAAGCGCCGACTAATGAATGACCCGTGAGCTTCACATCGGCG
CGGGATGAGCGAGTTCGATGAGAAGTTGTTGTCGAGGGCGCCGTGCCTTC
CTTGCAGCGTCGAACTCTGGCTCTTAGAATCTTCCATGACCGCTGAATTG
ACAATCCCACCCCAGGAACGAAGGAGACCAGGGAGAGGCTGGAGTGGAGT
CGCCTAAACGGAAGCTGAGCTGCAGGCTGCGACTGATGCGATGCACGCAA
CGTGGCAGCGCCTGAAAATTGACACAGGGATGCGCAGCTGCGGGGGGGCG
TCAGGAAGGCATGTAACTGACTGAAGAGAGTGCCAAGTGCGGCAACCGTT
CGTTTCTTCGAGCGCCACCTCGTTGAGGGAGAGAAGCAGCTGTGCATGGG
AGACCAGCATTGGTTCTTCCAAAACATCAAATCGGTGCAGCTGGAGGAGG
TGAAGAAAGGCGAATCGCAGTGCGTCCATGACGAGGAAAGGAGACTGCTG
CGCGACAAAGGGCGTAACCGCGAGAGATCGATGCGATTTTTCCGCTCGCT
GCTGAACGCTAAATCCAACATTCTCGATCCCGACATCCCGAAGAGGCTGC
CGCAGCAACCAGTCGCAAGTGCCCTCGGGATCGGACCCACAAAGGAGATT
GCCACAGCGATGGCGGCAATGGCAAAGGCGAAAGCGGTGGGGCCGGACGG
CCTTTCCGCGGAATTGCTGAAACTCGGGCTTCAACAAGACCGGACCATCC
TGCTGGAGTTCCACCGACTCACCACCCTCATCTGGCGCGAGGGGAAAGTC
CACAGCAGTAGAAAGACGCGATCATTACCGTACTCCACAAGAAGGGCGAC
AAGACGGAGTGCGAAAACTACCGCGGCATCTCGCTCGTGTCACCCGCGGA
TAAGGATACTCCTTAACGTGGTTTGCCAGGAGACTTGGCGCTTAGTGTGA
GGCGAAGGGAGGAGTAGTGCGGGTTTCAACCGGATCGCTCGACCTTGGAC
ATGATGTTTTTGGTGCGCAGGCTGCAGAAAATGGGCGGAAGGCAGGAATG
TCTCTCTTCATGTGTTTTATAGACCTCTAGAAGGCGTACGACATCGTTGA
CCGCACCCTCCTGTGGCAGGTAAGTACTCACTCGCATCGGGGTACAACCG
CAGATGATAGCAGTCATTCAACAATTCCACGATGGGATGAGAGCTTATGT
GCGACCTGATGACGGTGTCTGTTCGGATTGGTTCGAGGCGGAACAAGGAC
TACTGCAAGGATGCATGATATCCCCGCTGTTGTTCAACATCTTCTTCGCA
GCCGTGCTGACCGTTGTCCTCCAAAGATTCAGTGACGATACGGTCATCCT
CGCCGAGCCGACGTCGATGGGACCGGAGCCGGTTATGGACTTCGTTCGTC
GTCCGGGAAGTAGAGCCCTCCCTCAAGACCCGAATGGTATAGGCCGGGGT
AATCGAGGCCCTCCTGTATGACATGCACCCTTCGCCAGGAGCACAACGTC
AAACTCCGCACCCTACACCACCGGGTCTTGCTTTGCATTATCGGGTCACA
GCTCAAGAGACCAGACAATCGGATGACCTCGTACGACCGTGCCCTTGAGA
TAACCCGGTGTGAGAGCATTGAGGCATTGTTGCGCACGATAAAAAAAAAT
GTATGCGGGGGCGCTCATCCGAATGAGCGGCAGGCGGCTGCCAAAGCGAG
TCGTGTTCGGAAACCTTGAGGGTGCAGCGCGGAGAGGACGGGGTGGGAAG
GAGAAAGAGTGGACCGATTGCGTACAGAGCGACATCCGGGTGTTTAGCAT
AGTGGCGGACTGGAAAGTAACGGCGTTGGAGGCTGAGGTGTGCGTTGAAA
CGGTCACGGAGGTGGGGCGGAGGTTCATGGCCGCGTGGAGGAAGTAAGAG
GTAGACGCGGCTAGATATCGCCAGGAGATGAGAAAGGCAACGAAACTGGA
AAAGTTGTTATCGCACATGGAATCGTAGAATTTTGCGAAGCGACACCCAT
AGGCCTAGCCGGCGAGTCGAAGGAATCGTTGTACGGACACGAGACAGACG
GAGACTTGCGTAGCGCCTAGGCATGTAGATGTGTCACGTGATTTTTATAT
TTATTTTCTCTCGTTAGTATTAACATATTAAATAGTAACAAGCAACGCGG
GGAGGGGGGGGACGCTGCCATACTTTTTATTTTTTCCCTGTTCAGCAGAC
CACGAGCGGGATTGGCCACCGTGTAAAGTTTTTTTTCGGGTTGGCAACCA
ATGATTAATACGCTGAATGTGAAAAACAACTTATTAAAACAACAGACTAC
TGCACAGCCGCATTTTTGTAAAACTGAGTGTGTTGAAAGGGAAGTGCTTG
CTGTCCTCGCGTTTTGTGGAATCTACATGAGGCGAACCTAAAGATTGGGC
GGTCTGTACCCACGACCACCTCCACATCGAGCCTCAATCTGACATACATG
CAGCCTCGGATGATGACAAGCAATGCCCCGATTAGACCCGTCACGTATCA
ACGCGGGAGTTTTGTGTTGTTTGTTTCACTGCCCGACGAAATTTGAAGCA
GTGGTGGGCATCGTAGAGCCGGAGAGCTTGTAGATTTCGCATATTTTACT
GTTAGACAAAAATACTTATTTTGGTGTTGCTGCTAAACAACTCGCCCTGC
TTACTCTGACGGAACAAAAACAAAGAAAGCCCAACAACCGTCACAATATC
AAGCAGAAGCCTTCCAGCGACACGCTAATCTCGCGCAGTAAGCTCTTGTT
AGAACTATATAATTAGAGAGTTTTGTCCCTTGAATAAAAATAAAAATAAA
AATGACGGGGCAACTACTGTTTGCGTTGAGTTAAACACGATCCGGGGACA
GAAATTCCCCCCCCCAACGTTTTTTCAACGGCTATCTCGGGTACGGTAGG
TCGGTAGGCCTACCGAACACCGTGATGAAACTCCCAACATCATCCCCCGT
CTTCAGTAGGTCTTTGTACCTTCGACAGCAACGTGTGGAGGGTATGGACA
GAGACGGGGGGGGGAGGGGGGGGCACCGGTCCTTGATTTCAAAGGTGGCG
TTTCACTCTGTTTGATGCCTTTAGGTAGGAATGCTCGAGCATGAGAGGCC
AAGCTACGGTAGTCCTCGCAAGCTGTCGAATCGTTCTTTCAGGGATCGCA
CCAGGCAGTGATCAGTTTTGCTTAGCTTGGAACGTATACGTATGCCGCAC
CAGACTCTTGACATCGTCGAGCAAAGCGAAACGGCAGGACGAGGCAGAGC
TTCCGTCGATTCCCAGCAGCTCGAAAAGACCTCGGGGAGAGGTACTCGCT
GCCCATCCCGTGGGGCTGCTTCCCGTCTTCGCTGGTCATGAGCTCCAGAG
GGTTGCCGAAAACGACAGTCTTGATTGCACGCTTCGTCTTTTTTGTACAA
ATGTAGCGAGGATATCGAAAAAACGTTTGACGAATCGAGAACCTCGACTA
GAACGGGAATATCTGTTTTGATTTTGGCTTTCATTTTGCTGAAAAAGCTG
CGTGCAATCTCGAAGTTGAAGACGACCAGGTTCCTATAAATGAAGGCCCA
TTTTTCGGAACGTCTACCTCTCTATAGTAGTCAACAGGTGCTTCGTGAAA
TGTTGGTGCCTAAACTTGCAGACCCGGTTTGGCTGCAGAAGAGCATCGTT
TGACCCACCGTTACATCAAAAACTGCTCCCGCGAATCTCTTGAACAACCC
ATCTGCTGAGGCGTTTCCAACAAGGCTGTCGCTTGTACCTAAGTAATATC
AATACATTTCTGTACGTGTGGCGTTCGTTATCCGTTTGCAGTCGTGGAAA
TGTCGAGACCCGAAGCTCGAGCCGCAGCCAAGACCATGTACGACCATCAG
ATTCCCGAGATGAACCCAGATGTTCTGCGGCAGGCGATGGAGCTGGGGCC
GGCAGAGAAGACGGCGACTACACACCAGGTTTGTTAAGTTCGAGGCGTGT
TACGTGAGTGAAAATGTTCTTGTCCTGCCCCCCCCTTCCAAGAACGGCAG
CATGACCCTATTCCTCGGAAGGAACAGGCATGTCGTGCAGAGCTAGATAC
TTTATATTACTGCAAATAACAGCAAAATAAGATGGATTCGAAAGGGTGGG
TGAGTGGGTATTTAGGCGCAATACGTTACCGCAACCGGTCAGCATGCCGG
GAGAACGCCATATTTTTCAAGGGTGAAGGCGCTGAAGCACGGGGCTATCC
TCGATCCCCGCGACCTTACCGCGCTGTACCAGACAGCGACGAAACATGCT
CAAACTTCATACCAGCGAGTACGAAAGATCACCCATCGTAGTGTACCCTA
GCTTACCGTGTTTCTAATCTCGTGCGTCCGATGGTCTCCCTGTCCTCCGA
TTCCTCCTCTCGCGGGGCCATTCATCTGATCGGCAGAAACTCGTGCCTGA
CGATTCCGAGCTAGTGGTCAGCAAGGCTCCACGTCCCCTGCCCATGGATC
GCTCTAGGGTTCCAACCACGGCCAACGAGGTGGAAGAGACAAAGGGCTTG
CTCACGCAGACGCAGCTCGCCGAGGTCTTGAAAAGGTAAAAAAAAATTAT
GAGGGCGTGGTCACGGGATGGATGCTTTCGTGACGATGGAGACAAATTAC
GAGATACTGTCGCGCTTCGTTTAAAGCATCAAAGGGATCGTCTCGAAAAG
AGCCTTGGATGACGATGCCCCTTTCTCCCGATCTCGCCCCGTGCTATTAC
TGTTATAACTTTTTCCGTTTCCCTTTTTTGGGGGGGGGGGGGGGTGGCAG
GCTGGTTCCGCCGAGTGAAATATCTTCTCCGGAGCTGAAGCAGAGCGTGG
TGGGCGATTTCCACATCTCCGAGGACAGTGCGGCGATTTTGGCGCGTTAC
TACCGTGCGCCAGACGTTCGGATGTACGATGACGTCATGACGGCACGGTG
GCGATGGAAGTCGACGACGGACATGACACGAAAAGCTGTAGAGATTTTGC
CCCAAGAAGCAAGGGGAGTTCCAAAGTCTTGAGGCTTTTGTAGTAGAGGG
GTGTTATAACATATGTGGCTCCATCCCGGAAAGACGGGAACCGGTGTCTC
GTGTCTTACTTTTGCCGCGTCAGCGAGGGTACCGATCTGTCAGGGCGCGG
TGTTT back to topCoding sequence (CDS) from alignment at F-serratus_M_contig64:252430..258784+ >mRNA_F-serratus_M_contig64.17304.1 ID=mRNA_F-serratus_M_contig64.17304.1|Name=mRNA_F-serratus_M_contig64.17304.1|organism=Fucus serratus male|type=CDS|length=1338bp|location=Sequence derived from alignment at F-serratus_M_contig64:252430..258784+ (Fucus serratus male) ATGGGAAACTCTGCGAGTAAGACTGGAGCGAATGTCTCCCGGGTGGCACG AGCGATGACCAAAGCAGACCCAAAAGGAAAGGCTCCCACTGCAGGAACAT TGCGTTCATCGGGAGAAGGAGATGCTGTCAAGAATTTCAAGCCGACGAAA GATGGGAAACTCTGCGAGTAAGACTGGAGCGAATGTCTCCCGGGTGGCAC GAGCGATGACCAAAGCAGACCCAAAAGGAAAGGCTCCCACTGCAGGAACA TTGCGTTCATCGGGAGAAGGAGATGCTGTCAAGAATTTCAAGCCGACGAA AGTCGTGGAAATGTCGAGACCCGAAGCTCGAGCCGCAGCCAAGACCATGT ACGACCATCAGATTCCCGAGATGAACCCAGATGTTCTGCGGCAGGCGATG GAGCTGGGGCCGGCAGAGAAGACGGCGACTACACACCAGTCGTGGAAATG TCGAGACCCGAAGCTCGAGCCGCAGCCAAGACCATGTACGACCATCAGAT TCCCGAGATGAACCCAGATGTTCTGCGGCAGGCGATGGAGCTGGGGCCGG CAGAGAAGACGGCGACTACACACCAGAAACTCGTGCCTGACGATTCCGAG CTAGTGGTCAGCAAGGCTCCACGTCCCCTGCCCATGGATCGCTCTAGGGT TCCAACCACGGCCAACGAGGTGGAAGAGACAAAGGGCTTGCTCACGCAGA CGCAGCTCGCCGAGGTCTTGAAAAGAAACTCGTGCCTGACGATTCCGAGC TAGTGGTCAGCAAGGCTCCACGTCCCCTGCCCATGGATCGCTCTAGGGTT CCAACCACGGCCAACGAGGTGGAAGAGACAAAGGGCTTGCTCACGCAGAC GCAGCTCGCCGAGGTCTTGAAAAGGCTGGTTCCGCCGAGTGAAATATCTT CTCCGGAGCTGAAGCAGAGCGTGGTGGGCGATTTCCACATCTCCGAGGAC AGTGCGGCGATTTTGGCGCGTTACTACCGTGCGCCAGACGTTCGGATGTA CGATGACGTCATGACGGCACGGTGGCGATGGAAGTCGACGACGGACATGA CACGAAAAGCTGTAGAGATTTTGCCCCAAGAAGCAAGGGGAGTTCCAAAG TCTTGAGCTGGTTCCGCCGAGTGAAATATCTTCTCCGGAGCTGAAGCAGA GCGTGGTGGGCGATTTCCACATCTCCGAGGACAGTGCGGCGATTTTGGCG CGTTACTACCGTGCGCCAGACGTTCGGATGTACGATGACGTCATGACGGC ACGGTGGCGATGGAAGTCGACGACGGACATGACACGAAAAGCTGTAGAGA TTTTGCCCCAAGAAGCAAGGGGAGTTCCAAAGTCTTGA back to top
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