mRNA_F-serratus_M_contig6392.17293.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6392.17293.1
Unique NamemRNA_F-serratus_M_contig6392.17293.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 2.690e-55
Identity = 96/154 (62.34%), Postives = 118/154 (76.62%), Query Frame = 1
Query:    4 QAAGNGGVVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKRGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYV 465
            QA  N G++  DIEW+I+ +GA  NPPAT QLAAGK V++  +LHGQ++   +LP  LV LLED  LT TGVGI GDCTR+  F+GV+VAHAVDL  LA+ RK+ LGL+RGLADLC HLLG+ L KD  VRLS+WN+ DLS++QK YAALDAY 
Sbjct:  246 QAEANNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQKRYAALDAYA 399          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: A0A6P5EXU7_ANACO (Werner Syndrome-like exonuclease n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EXU7_ANACO)

HSP 1 Score: 95.9 bits (237), Expect = 1.130e-21
Identity = 62/150 (41.33%), Postives = 81/150 (54.00%), Query Frame = 1
Query:   25 VVGFDIEWDIALS-GAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKR-GLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 468
            VVG D EW    S GA  NP A  QL  G+  LV  +LH    P      +L   L D    F GVG+ GD  R+    G+ VA AVDL  LA  R     LK+ GLA L + ++   + K  RVR+SRW+R+DL+ +Q  YA +DA++S
Sbjct:   53 VVGLDAEWRPNFSAGAAPNPVALVQLCVGRRCLVFSLLHADYVPL-----ALANFLADTRFAFVGVGVAGDAERLADECGLPVADAVDLRDLAAERTGRRQLKQMGLAGLAAEIMEVEVRKPSRVRMSRWDRRDLTLDQIGYACVDAFLS 197          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: A0A199VKE8_ANACO (Werner Syndrome-like exonuclease n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VKE8_ANACO)

HSP 1 Score: 95.9 bits (237), Expect = 2.220e-20
Identity = 62/150 (41.33%), Postives = 81/150 (54.00%), Query Frame = 1
Query:   25 VVGFDIEWDIALS-GAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKR-GLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 468
            VVG D EW    S GA  NP A  QL  G+  LV  +LH    P      +L   L D    F GVG+ GD  R+    G+ VA AVDL  LA  R     LK+ GLA L + ++   + K  RVR+SRW+R+DL+ +Q  YA +DA++S
Sbjct:  252 VVGLDAEWRPNFSAGAAPNPVALVQLCVGRRCLVFSLLHADYVPL-----ALANFLADTRFAFVGVGVAGDAERLADECGLPVADAVDLRDLAAERTGRRQLKQMGLAGLAAEIMEVEVRKPSRVRMSRWDRRDLTLDQIGYACVDAFLS 396          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: UPI001CC3C793 (Werner Syndrome-like exonuclease n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC3C793)

HSP 1 Score: 89.7 bits (221), Expect = 1.000e-18
Identity = 55/149 (36.91%), Postives = 85/149 (57.05%), Query Frame = 1
Query:   25 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKR-GLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 468
            VVG DIEW  + S + E+  A  QL      L+ Q+L+  + P+     SL+  L++ SLTF GVGI GD  ++ +   + V + VDL  LA  R     L+  GL +L   +LG+ + K  +V +SRW+ + L+ +Q  YA+LDA++S
Sbjct:  125 VVGLDIEWRPSFSRSVEHNVAVLQLCVEGNCLIFQLLYADQIPT-----SLINFLKNPSLTFVGVGIQGDVEKLLEDHELNVVNTVDLRSLAARRLSNPELRNSGLKELTREILGKEIGKPRKVTMSRWDAEWLTYDQVQYASLDAFLS 268          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: A0A3B3QYL5_9TELE (DNA helicase n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QYL5_9TELE)

HSP 1 Score: 90.1 bits (222), Expect = 4.930e-18
Identity = 61/150 (40.67%), Postives = 74/150 (49.33%), Query Frame = 1
Query:   19 GGVVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKRGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 468
            G  VGFD+EW  + +   +   A  QL        L  L          P  L  LLED ++   GVGI GD  R+   F +K+ + ++LT LA   KL    K  L  L  HL  R L KD  VR S WN  DL+EEQK YAA DAYVS
Sbjct:   33 GSAVGFDMEWPPSFTKGQKQKVALIQLCVSDHKCYLFHLSSM----LGFPAGLKMLLEDDTIKKVGVGIEGDMWRLLSDFDIKLKNFLELTDLA-NEKLRCAEKWSLDGLVKHLFNRQLKKDRDVRCSSWNDFDLTEEQKRYAATDAYVS 177          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: A0A3B3QY10_9TELE (DNA helicase n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QY10_9TELE)

HSP 1 Score: 90.1 bits (222), Expect = 4.930e-18
Identity = 61/150 (40.67%), Postives = 74/150 (49.33%), Query Frame = 1
Query:   19 GGVVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKRGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 468
            G  VGFD+EW  + +   +   A  QL        L  L          P  L  LLED ++   GVGI GD  R+   F +K+ + ++LT LA   KL    K  L  L  HL  R L KD  VR S WN  DL+EEQK YAA DAYVS
Sbjct:   63 GSAVGFDMEWPPSFTKGQKQKVALIQLCVSDHKCYLFHLSSM----LGFPAGLKMLLEDDTIKKVGVGIEGDMWRLLSDFDIKLKNFLELTDLA-NEKLRCAEKWSLDGLVKHLFNRQLKKDRDVRCSSWNDFDLTEEQKRYAATDAYVS 207          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: UPI00053FA13A (Werner Syndrome-like exonuclease n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FA13A)

HSP 1 Score: 85.9 bits (211), Expect = 6.530e-18
Identity = 57/151 (37.75%), Postives = 77/151 (50.99%), Query Frame = 1
Query:   25 VVGFDIEWDIALSGAH--ENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIR-KLPLGLKRGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 468
            VVG DIEW       H   NP +  QL  G   LV Q+ H     +  +P SL   L D   TF GVGI+ D  ++   + ++V++ VDL  LA IR   P     GL  L   +LG   +K   + +S W  + LSE QK YAA+DA++S
Sbjct:   42 VVGLDIEWLPNFYNRHPSRNPISVLQLCVGHHCLVFQLQH-----ACYIPQSLHNFLSDDDYTFVGVGIDDDVQKLYYDYDLEVSNTVDLRTLASIRYDQPTLGNTGLVKLAEMVLGLQYNKPRDITISNWTNRYLSETQKEYAAIDAFLS 187          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: UPI0019D5965F (Werner Syndrome-like exonuclease n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5965F)

HSP 1 Score: 84.7 bits (208), Expect = 7.890e-18
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 1
Query:   25 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKR-GLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 468
            V   D+EW  +  G  +NP AT QL   +  L+ Q+LH        L  +L G L D ++ F GVG++ D  R+    G++V  AVDL   A        L++ GL  + + +LG  L+K   V  SRW+ + LS+EQ TYA LDA+VS
Sbjct:    2 VARLDVEWRPSYRG-KQNPVATLQLCVDRRCLIFQLLHADY-----LHAALPGFLGDRAVRFFGVGVDADAARLRADHGLEVGRAVDLRGYAEEYAGRPDLRQAGLRAIAAAVLGVDLAKPHGVTTSRWDARSLSDEQITYACLDAFVS 144          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: A0A0E0IQK6_ORYNI (3'-5' exonuclease domain-containing protein n=8 Tax=Oryza TaxID=4527 RepID=A0A0E0IQK6_ORYNI)

HSP 1 Score: 85.9 bits (211), Expect = 8.370e-18
Identity = 58/156 (37.18%), Postives = 80/156 (51.28%), Query Frame = 1
Query:    4 QAAGNGGVVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKR-GLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 468
            ++ G+  VVG D+EW  A       P A  QL   +  LV QILH        LP +L   L D   TF GVG+  D  R+   +G++V  AVDL  LA        L+R GL  L   ++G  + K   VR+S W++++LSE+Q  YA  DA+ S
Sbjct:   48 RSCGHPLVVGLDVEWRPAAP--VPGPVAVLQLCVDRRCLVFQILHADY-----LPDALSRFLADPRYTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACADAFAS 196          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: B9FDW5_ORYSJ (3'-5' exonuclease domain-containing protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=B9FDW5_ORYSJ)

HSP 1 Score: 84.7 bits (208), Expect = 8.670e-18
Identity = 56/149 (37.58%), Postives = 75/149 (50.34%), Query Frame = 1
Query:   25 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKR-GLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 468
            VVG D+EW  A       P A  QL   +  LV QILH    P      +L   L D   TF GVG+  D  R+   +G++V  AVDL  LA        L+R GL  L   ++G  + K   VR+S W++++LSE+Q  YA  DA+ S
Sbjct:   10 VVGLDVEWRPAAP--VPGPVAVLQLCVDRRCLVFQILHADYVPD-----ALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACADAFAS 151          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE2.690e-5562.343'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6P5EXU7_ANACO1.130e-2141.33Werner Syndrome-like exonuclease n=1 Tax=Ananas co... [more]
A0A199VKE8_ANACO2.220e-2041.33Werner Syndrome-like exonuclease n=1 Tax=Ananas co... [more]
UPI001CC3C7931.000e-1836.91Werner Syndrome-like exonuclease n=1 Tax=Telopea s... [more]
A0A3B3QYL5_9TELE4.930e-1840.67DNA helicase n=2 Tax=Paramormyrops kingsleyae TaxI... [more]
A0A3B3QY10_9TELE4.930e-1840.67DNA helicase n=1 Tax=Paramormyrops kingsleyae TaxI... [more]
UPI00053FA13A6.530e-1837.75Werner Syndrome-like exonuclease n=1 Tax=Beta vulg... [more]
UPI0019D5965F7.890e-1837.58Werner Syndrome-like exonuclease n=1 Tax=Panicum v... [more]
A0A0E0IQK6_ORYNI8.370e-1837.183'-5' exonuclease domain-containing protein n=8 Ta... [more]
B9FDW5_ORYSJ8.670e-1837.583'-5' exonuclease domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6392contigF-serratus_M_contig6392:28209..28957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score103.6
Seed ortholog evalue8.5e-20
Seed eggNOG ortholog981085.XP_010111221.1
KEGG koko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360
EggNOG free text desc.Werner Syndrome-like
EggNOG OGs37U7J@33090,3GIS0@35493,4JVWJ@91835,KOG4373@1,KOG4373@2759
EC3.1.11.1
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons2
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931972.8558457-CDS-F-serratus_M_contig6392:28208..286481622931972.8558457-CDS-F-serratus_M_contig6392:28208..28648Fucus serratus maleCDSF-serratus_M_contig6392 28209..28648 +
1690964083.2904093-CDS-F-serratus_M_contig6392:28208..286481690964083.2904093-CDS-F-serratus_M_contig6392:28208..28648Fucus serratus maleCDSF-serratus_M_contig6392 28209..28648 +
1622931972.8708932-CDS-F-serratus_M_contig6392:28929..289571622931972.8708932-CDS-F-serratus_M_contig6392:28929..28957Fucus serratus maleCDSF-serratus_M_contig6392 28930..28957 +
1690964083.3044512-CDS-F-serratus_M_contig6392:28929..289571690964083.3044512-CDS-F-serratus_M_contig6392:28929..28957Fucus serratus maleCDSF-serratus_M_contig6392 28930..28957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6392.17293.1prot_F-serratus_M_contig6392.17293.1Fucus serratus malepolypeptideF-serratus_M_contig6392 28209..28957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6392.17293.1

>prot_F-serratus_M_contig6392.17293.1 ID=prot_F-serratus_M_contig6392.17293.1|Name=mRNA_F-serratus_M_contig6392.17293.1|organism=Fucus serratus male|type=polypeptide|length=156bp
TQAAGNGGVVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKT
PSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLA
LIRKLPLGLKRGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAA
LDAYVS
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mRNA from alignment at F-serratus_M_contig6392:28209..28957+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6392.17293.1 ID=mRNA_F-serratus_M_contig6392.17293.1|Name=mRNA_F-serratus_M_contig6392.17293.1|organism=Fucus serratus male|type=mRNA|length=749bp|location=Sequence derived from alignment at F-serratus_M_contig6392:28209..28957+ (Fucus serratus male)
ACACAGGCGGCGGGCAATGGCGGTGTGGTGGGCTTTGATATCGAGTGGGA TATCGCGCTTAGTGGTGCGCATGAAAATCCTCCGGCGACGTTCCAACTGG CAGCCGGTAAGTTCGTCTTGGTTCTGCAAATCTTGCACGGCCAGAAGACG CCGTCGACGAAGCTTCCAGGGTCCTTAGTCGGCCTTCTCGAGGACGCCAG CCTTACCTTCACAGGCGTCGGCATCAATGGAGACTGCACTAGAATCGAGA AGTTCTTTGGCGTTAAAGTAGCACACGCGGTTGACTTGACCAAGCTAGCC TTGATTCGAAAGTTGCCGCTAGGACTCAAGCGCGGCCTGGCCGACCTGTG CTCTCATCTGCTTGGTAGAAGCCTCTCCAAGGACGGACGCGTAAGACTTT CAAGGTGGAACCGGAAGGATCTCTCGGAAGAACAGAAGACGTGAGTTTTC AAGTCGTGATTTGCTCTAGGGTTGCTCGGCGTCCTTTTTTTTGTGTGTAG GCCGCGTGTATTCAAGAGATTCGGAGCTGGGACTGTCTAGCGACACCTCT TCGGCCAGGTAAAATCAACCTTCTTGTGATGTTGGCAAGTTGCCCGCGCG CAAACAATCTCACCGAATTTTAGCAATACAATATCGTTGGGACATTGCCC CCCCCCCCCCCCCCCCCCCCCCCGGGCGCGTGCTAAGCCTCCTCGTTCGC TTCGTGTTTCCTTCACCAAAGGTATGCCGCATTAGATGCGTACGTGTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6392:28209..28957+

>mRNA_F-serratus_M_contig6392.17293.1 ID=mRNA_F-serratus_M_contig6392.17293.1|Name=mRNA_F-serratus_M_contig6392.17293.1|organism=Fucus serratus male|type=CDS|length=936bp|location=Sequence derived from alignment at F-serratus_M_contig6392:28209..28957+ (Fucus serratus male)
ACACAGGCGGCGGGCAATGGCGGTGTGGTGGGCTTTGATATCGAGTGGGA
TATCGCGCTTAGTGGTGCGCATGAAAATCCTCCGGCGACGTTCCAACTGG
CAGCCGGTAAGTTCGTCTTGGTTCTGCAAATCTTGCACGGCCAGAAGACG
CCGTCGACGAAGCTTCCAGGGTCCTTAGTCGGCCTTCTCGAGGACGCCAG
CCTTACCTTCACAGGCGTCGGCATCAATGGAGACTGCACTAGAATCGAGA
AGTTCTTTGGCGTTAAAGTAGCACACGCGGTTGACTTGACCAAGCTAGCC
TTGATTCGAAAGTTGCCGCTAGGACTCAAGCGCGGCCTGGCCGACCTGTG
CTCTCATCTGCTTGGTAGAAGCCTCTCCAAGGACGGACGCGTAAGACTTT
CAAGGTGGAACCGGAAGGATCTCTCGGAAGAACAGAAGACACACAGGCGG
CGGGCAATGGCGGTGTGGTGGGCTTTGATATCGAGTGGGATATCGCGCTT
AGTGGTGCGCATGAAAATCCTCCGGCGACGTTCCAACTGGCAGCCGGTAA
GTTCGTCTTGGTTCTGCAAATCTTGCACGGCCAGAAGACGCCGTCGACGA
AGCTTCCAGGGTCCTTAGTCGGCCTTCTCGAGGACGCCAGCCTTACCTTC
ACAGGCGTCGGCATCAATGGAGACTGCACTAGAATCGAGAAGTTCTTTGG
CGTTAAAGTAGCACACGCGGTTGACTTGACCAAGCTAGCCTTGATTCGAA
AGTTGCCGCTAGGACTCAAGCGCGGCCTGGCCGACCTGTGCTCTCATCTG
CTTGGTAGAAGCCTCTCCAAGGACGGACGCGTAAGACTTTCAAGGTGGAA
CCGGAAGGATCTCTCGGAAGAACAGAAGACGTATGCCGCATTAGATGCGT
ACGTGTCCGTATGCCGCATTAGATGCGTACGTGTCC
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