mRNA_F-serratus_M_contig6379.17283.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6379.17283.1
Unique NamemRNA_F-serratus_M_contig6379.17283.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6379.17283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6379contigF-serratus_M_contig6379:10786..12264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size564
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6379.17283.1prot_F-serratus_M_contig6379.17283.1Fucus serratus malepolypeptideF-serratus_M_contig6379 10786..12264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931971.0126534-CDS-F-serratus_M_contig6379:10785..109581622931971.0126534-CDS-F-serratus_M_contig6379:10785..10958Fucus serratus maleCDSF-serratus_M_contig6379 10786..10958 +
1690964082.4981253-CDS-F-serratus_M_contig6379:10785..109581690964082.4981253-CDS-F-serratus_M_contig6379:10785..10958Fucus serratus maleCDSF-serratus_M_contig6379 10786..10958 +
1622931971.0335555-CDS-F-serratus_M_contig6379:11273..113491622931971.0335555-CDS-F-serratus_M_contig6379:11273..11349Fucus serratus maleCDSF-serratus_M_contig6379 11274..11349 +
1690964082.507416-CDS-F-serratus_M_contig6379:11273..113491690964082.507416-CDS-F-serratus_M_contig6379:11273..11349Fucus serratus maleCDSF-serratus_M_contig6379 11274..11349 +
1622931971.0529203-CDS-F-serratus_M_contig6379:11615..117461622931971.0529203-CDS-F-serratus_M_contig6379:11615..11746Fucus serratus maleCDSF-serratus_M_contig6379 11616..11746 +
1690964082.5239544-CDS-F-serratus_M_contig6379:11615..117461690964082.5239544-CDS-F-serratus_M_contig6379:11615..11746Fucus serratus maleCDSF-serratus_M_contig6379 11616..11746 +
1622931971.0716052-CDS-F-serratus_M_contig6379:12080..122641622931971.0716052-CDS-F-serratus_M_contig6379:12080..12264Fucus serratus maleCDSF-serratus_M_contig6379 12081..12264 +
1690964082.5331242-CDS-F-serratus_M_contig6379:12080..122641690964082.5331242-CDS-F-serratus_M_contig6379:12080..12264Fucus serratus maleCDSF-serratus_M_contig6379 12081..12264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6379.17283.1

>prot_F-serratus_M_contig6379.17283.1 ID=prot_F-serratus_M_contig6379.17283.1|Name=mRNA_F-serratus_M_contig6379.17283.1|organism=Fucus serratus male|type=polypeptide|length=188bp
MPWKEDASDVEDYLAGRARRPTLLLQVEMRSTPMPPRVKGPKSWDAVGVH
QSRIEPFRSASVAPPTELERPCETSSNAIERQQAIRSTPDRERASVRRQK
QTQHERRQVENNDEEDKLAALVEMVGNRRDPTKRRQELHSFIARARRKCP
ADKSDLGVQKVDRLSPVEKSTDKVSDVGVCNLSEHLG*
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mRNA from alignment at F-serratus_M_contig6379:10786..12264+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6379.17283.1 ID=mRNA_F-serratus_M_contig6379.17283.1|Name=mRNA_F-serratus_M_contig6379.17283.1|organism=Fucus serratus male|type=mRNA|length=1479bp|location=Sequence derived from alignment at F-serratus_M_contig6379:10786..12264+ (Fucus serratus male)
ATGCCTTGGAAGGAGGATGCGTCAGACGTAGAGGATTACCTGGCCGGTCG
GGCTAGACGTCCCACTCTTTTGTTACAGGTGGAGATGAGATCGACTCCGA
TGCCACCGCGCGTCAAAGGGCCGAAGTCGTGGGACGCAGTAGGCGTCCAC
CAGAGCAGGATCGAGCCTTTCAGGTGTGTCAGTTCGTGTTGGCAAGGATA
TCATCCTGCACCATGCCATTGGGCAGTCGGTAATGCGGAAGAGGCGTGCT
TATTGTCGTGTTTTGCCTGTCCATCCGGCGAGGAACGCGAAATATCCATT
TGAGCAGGCGGTACCGTGGAAGCAAATTTTTTCATTGCCGCCCCGTGCCT
GTCCATAGGGCGAGAAGTTGGCATATTTCGCTTGTCTGCTATTATACTGC
TGCCTTTTTTTCTGTCGTTTTGTTGTTGTGTTTCTCTCTTCACTACCCGT
TCTACGCGTGCTCGTGCCCTCTATGCTTCGGTATGAAGATCCGCTTCTGT
CGCTCCTCCGACGGAGTTGGAACGGCCCTGCGAGACCTCGAGCAACGCGA
TAGAACGACAGCAAGTGAGACGCTAGTGTAGGATCAACCCGCGACGCGTG
TCACCGCTGCAGCCGAGAACGCCCCACACCACGCGGGATGACCCTTGAGT
GTCCCCGATGAAGATGCCGGAAAAAATACTCCCAGCAGCGTCACCTCCCG
CTGGCACTGCACGGTATAATGGTTTATGTATAGACTAAACTAATTTCCGC
ACGAGATGTATCGAATGGTGACGCCAGCGAGGACATGATGTATATCGTCT
CATTTCCCGCCGTACCTGAACGTGTTACAGGCTATTCGGTCCACCCCAGA
CCGCGAGCGGGCCAGCGTACGTCGGCAAAAGCAAACCCAGCACGAGAGAC
GGCAAGTGGAAAACAATGATGAGGAGGACAAGTTAGCGGCATTGGTGGAG
ATGGTGGGAAAGTGAGTGTAAGCCATGCGCCAAATCGATTGTTTTCAGCC
GCGTTTGGCTGCGATCAAGGACAAGTAGCAAGTTAGTTCATGACAAAACA
GCTGGAAACTTGAGCCTCGCGGTTTCAAACGCTTGTCACGCGGTAGGCGC
GTACATGATATCCTCTGTGTGAGACGCGCAGGAAGTTAGGTCTGAAGATA
TTATTATTATTAACCTGAAAATTACAATCGCTAGGTGCAAAAACATTGTA
GACAAAATCATTCAAGCGCAATGTTCAAGTACCCCCTGGGACTTGAGATC
ATCATTATTGCCTACCGTGTATCGTTGCCGCGTCGCACTTTTCAGTCGAA
GGGACCCTACAAAGAGAAGACAAGAGCTCCACTCCTTCATCGCCAGGGCC
CGGCGGAAGTGTCCAGCCGATAAATCCGATTTGGGCGTACAGAAGGTTGA
TAGGCTGTCACCAGTGGAGAAGAGCACGGACAAGGTTTCAGATGTTGGTG
TTTGTAATCTGTCAGAGCACCTTGGATAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6379:10786..12264+

>mRNA_F-serratus_M_contig6379.17283.1 ID=mRNA_F-serratus_M_contig6379.17283.1|Name=mRNA_F-serratus_M_contig6379.17283.1|organism=Fucus serratus male|type=CDS|length=1128bp|location=Sequence derived from alignment at F-serratus_M_contig6379:10786..12264+ (Fucus serratus male)
ATGCCTTGGAAGGAGGATGCGTCAGACGTAGAGGATTACCTGGCCGGTCG
GGCTAGACGTCCCACTCTTTTGTTACAGGTGGAGATGAGATCGACTCCGA
TGCCACCGCGCGTCAAAGGGCCGAAGTCGTGGGACGCAGTAGGCGTCCAC
CAGAGCAGGATCGAGCCTTTCAGATGCCTTGGAAGGAGGATGCGTCAGAC
GTAGAGGATTACCTGGCCGGTCGGGCTAGACGTCCCACTCTTTTGTTACA
GGTGGAGATGAGATCGACTCCGATGCCACCGCGCGTCAAAGGGCCGAAGT
CGTGGGACGCAGTAGGCGTCCACCAGAGCAGGATCGAGCCTTTCAGATCC
GCTTCTGTCGCTCCTCCGACGGAGTTGGAACGGCCCTGCGAGACCTCGAG
CAACGCGATAGAACGACAGCAAATCCGCTTCTGTCGCTCCTCCGACGGAG
TTGGAACGGCCCTGCGAGACCTCGAGCAACGCGATAGAACGACAGCAAGC
TATTCGGTCCACCCCAGACCGCGAGCGGGCCAGCGTACGTCGGCAAAAGC
AAACCCAGCACGAGAGACGGCAAGTGGAAAACAATGATGAGGAGGACAAG
TTAGCGGCATTGGTGGAGATGGTGGGAAAGCTATTCGGTCCACCCCAGAC
CGCGAGCGGGCCAGCGTACGTCGGCAAAAGCAAACCCAGCACGAGAGACG
GCAAGTGGAAAACAATGATGAGGAGGACAAGTTAGCGGCATTGGTGGAGA
TGGTGGGAAATCGAAGGGACCCTACAAAGAGAAGACAAGAGCTCCACTCC
TTCATCGCCAGGGCCCGGCGGAAGTGTCCAGCCGATAAATCCGATTTGGG
CGTACAGAAGGTTGATAGGCTGTCACCAGTGGAGAAGAGCACGGACAAGG
TTTCAGATGTTGGTGTTTGTAATCTGTCAGAGCACCTTGGATAGTCGAAG
GGACCCTACAAAGAGAAGACAAGAGCTCCACTCCTTCATCGCCAGGGCCC
GGCGGAAGTGTCCAGCCGATAAATCCGATTTGGGCGTACAGAAGGTTGAT
AGGCTGTCACCAGTGGAGAAGAGCACGGACAAGGTTTCAGATGTTGGTGT
TTGTAATCTGTCAGAGCACCTTGGATAG
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