prot_F-serratus_M_contig637.17276.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig637.17276.1
Unique Nameprot_F-serratus_M_contig637.17276.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length66
Homology
BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: A0A6H5KEU9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU9_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 7.520e-15
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 0
Query:    1 MIAVFGNEKGLAMYHLDVSQAFVQAPLKEDTILRLPPGCGERYGKLVRLLSGQYSLKQAGREWY 64
            M+A    E  L + H D+ QAFV+AP KEDT +RLP GCG   GK+V+L    Y L+QA REWY
Sbjct:  198 MLAALACELDLELCHFDIDQAFVRAPFKEDTFMRLPEGCGALSGKIVQLNKSLYGLRQASREWY 261          
BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.540e-8
Identity = 27/50 (54.00%), Postives = 31/50 (62.00%), Query Frame = 0
Query:   15 HLDVSQAFVQAPLKEDTILRLPPGCGERYGKLVRLLSGQYSLKQAGREWY 64
            H    QAFVQ+ L E   +RLPP CG R GK+VRL    Y LKQA R W+
Sbjct: 1475 HFYAEQAFVQSELDEVVFIRLPPACGARSGKVVRLRRSLYGLKQASRTWH 1524          
BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: A0A6H5JWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT4_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.850e-7
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 0
Query:   17 DVSQAFVQAPLKEDTILRLPPGCGERYGKLVRLLSGQYSLKQAGREWY 64
            DV QAFV++ L+ED  +RLP GCG+  G +V+L    Y L+Q  R+W+
Sbjct:  616 DVEQAFVRSELEEDVYMRLPQGCGDLSGMIVKLGKSLYGLRQTSRQWH 663          
BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: F2U8R8_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U8R8_SALR5)

HSP 1 Score: 48.9 bits (115), Expect = 1.290e-5
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 0
Query:   13 MYHLDVSQAFVQAPLKEDTILRLPP-----GCG-ERY-GKLVRLLSGQYSLKQAGREW 63
            ++ LD   A++QA LKE+  + LPP     G G +RY GK+ RLL   Y LKQAGR W
Sbjct:   64 LHQLDFKSAYLQADLKEELYMELPPHFTDIGDGAQRYAGKVCRLLKPLYGLKQAGRAW 121          
BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: F2U8R5_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U8R5_SALR5)

HSP 1 Score: 49.7 bits (117), Expect = 2.800e-5
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0
Query:   13 MYHLDVSQAFVQAPLKEDTILRLPP-----GCG-ERY-GKLVRLLSGQYSLKQAGREW 63
            ++ LD   A++QA LKE+  ++LPP     G G +RY GK+ RLL   Y LKQAGR W
Sbjct:  737 LHQLDFKSAYLQADLKEELYMKLPPHFTDIGDGAQRYAGKVCRLLKPLYGLKQAGRAW 794          
BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: F2U082_SALR5 (CCHC-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U082_SALR5)

HSP 1 Score: 49.7 bits (117), Expect = 2.810e-5
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0
Query:   13 MYHLDVSQAFVQAPLKEDTILRLPP-----GCG-ERY-GKLVRLLSGQYSLKQAGREW 63
            ++ LD   A++QA LKE+  ++LPP     G G +RY GK+ RLL   Y LKQAGR W
Sbjct:  809 LHQLDFKSAYLQADLKEELYMKLPPHFTDIGDGAQRYAGKVCRLLKPLYGLKQAGRAW 866          
BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: F2U081_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U081_SALR5)

HSP 1 Score: 49.7 bits (117), Expect = 2.810e-5
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0
Query:   13 MYHLDVSQAFVQAPLKEDTILRLPP-----GCG-ERY-GKLVRLLSGQYSLKQAGREW 63
            ++ LD   A++QA LKE+  ++LPP     G G +RY GK+ RLL   Y LKQAGR W
Sbjct:  467 LHQLDFKSAYLQADLKEELYMKLPPHFTDIGDGAQRYAGKVCRLLKPLYGLKQAGRAW 524          
BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: F2U4Z2_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U4Z2_SALR5)

HSP 1 Score: 48.9 bits (115), Expect = 4.970e-5
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 0
Query:   13 MYHLDVSQAFVQAPLKEDTILRLPP-----GCG-ERY-GKLVRLLSGQYSLKQAGREW 63
            ++ LD   A++QA LKE+  + LPP     G G +RY GK+ RLL   Y LKQAGR W
Sbjct:   85 LHQLDFKSAYLQADLKEELYMELPPHFTDIGDGAQRYAGKVCRLLKPLYGLKQAGRAW 142          
BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: F2UTR2_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UTR2_SALR5)

HSP 1 Score: 48.9 bits (115), Expect = 5.120e-5
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 0
Query:   13 MYHLDVSQAFVQAPLKEDTILRLPP-----GCG-ERY-GKLVRLLSGQYSLKQAGREW 63
            ++ LD   A++QA LKE+  + LPP     G G +RY GK+ RLL   Y LKQAGR W
Sbjct:  297 LHQLDFKSAYLQADLKEELYMELPPHFTDIGDGAQRYAGKVCRLLKPLYGLKQAGRAW 354          
BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: F2U501_SALR5 (Integrase catalytic domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U501_SALR5)

HSP 1 Score: 48.9 bits (115), Expect = 5.160e-5
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 0
Query:   13 MYHLDVSQAFVQAPLKEDTILRLPP-----GCG-ERY-GKLVRLLSGQYSLKQAGREW 63
            ++ LD   A++QA LKE+  + LPP     G G +RY GK+ RLL   Y LKQAGR W
Sbjct:  476 LHQLDFKSAYLQADLKEELYMELPPHFTDIGDGAQRYAGKVCRLLKPLYGLKQAGRAW 533          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KEU9_9PHAE7.520e-1553.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAC2_9PHAE1.540e-854.00Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JWT4_9PHAE1.850e-747.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
F2U8R8_SALR51.290e-548.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
F2U8R5_SALR52.800e-548.28Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
F2U082_SALR52.810e-548.28CCHC-type domain-containing protein n=1 Tax=Salpin... [more]
F2U081_SALR52.810e-548.28Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
F2U4Z2_SALR54.970e-548.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
F2UTR2_SALR55.120e-548.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
F2U501_SALR55.160e-548.28Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 5..64
e-value: 1.1E-8
score: 35.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig637contigF-serratus_M_contig637:306085..306282 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig637.17276.1mRNA_F-serratus_M_contig637.17276.1Fucus serratus malemRNAF-serratus_M_contig637 305822..306286 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig637.17276.1 ID=prot_F-serratus_M_contig637.17276.1|Name=mRNA_F-serratus_M_contig637.17276.1|organism=Fucus serratus male|type=polypeptide|length=66bp
MIAVFGNEKGLAMYHLDVSQAFVQAPLKEDTILRLPPGCGERYGKLVRLL
SGQYSLKQAGREWYM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2