mRNA_F-serratus_M_contig6369.17274.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6369.17274.1
Unique NamemRNA_F-serratus_M_contig6369.17274.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig6369.17274.1 vs. uniprot
Match: A0A6H5L513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L513_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.640e-25
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:    1 EAVRQLCSDGCKTP*EVNEGPGKAWVQDFLKRRPRVSERSTRIYEANRITENEEPCIRRFYEVWGQYVKTEDPKADHLHSTDET 252
            E V QLC+DG   P +  +GPGK W+  FLKR PRVSER+TRIYEANRITE++EP I  FY+ W   +    P+ADH+H+TDET
Sbjct:   40 ETVIQLCNDGRPIPWDPGQGPGKDWLAGFLKRHPRVSERTTRIYEANRITEDKEPRIVEFYKKWAALLDEHKPEADHVHNTDET 123
[Close]
BLAST of mRNA_F-serratus_M_contig6369.17274.1 vs. uniprot
Match: A0A6H5JRY4_9PHAE (HTH psq-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY4_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.690e-24
Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    1 EAVRQLCSDGCKTP*EVNEGPGKAWVQDFLKRRPRVSERSTRIYEANRITENEEPCIRRFYEVWGQYVKTEDPKADHLHSTDET 252
            +AVR+LC+DG + P +  +GPGK W+  F +R PRV+ERSTRIYEANRITE+EEP + +FYE W   +    P+A+H+H+TDET
Sbjct:   87 DAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALLDEFKPEANHVHNTDET 170
[Close]
BLAST of mRNA_F-serratus_M_contig6369.17274.1 vs. uniprot
Match: A0A6H5KJ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ62_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.610e-23
Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    1 EAVRQLCSDGCKTP*EVNEGPGKAWVQDFLKRRPRVSERSTRIYEANRITENEEPCIRRFYEVWGQYVKTEDPKADHLHSTDET 252
            +AVR+LC+DG + P +  +GPGK W+  FL+R PRV+ERSTRIYEANRITE+EEP + +FYE W        PKA+H+H+TDET
Sbjct:   87 DAVRRLCNDGRRIPWDPEKGPGKDWLGGFLRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALHDEVKPKANHVHNTDET 170
[Close]
BLAST of mRNA_F-serratus_M_contig6369.17274.1 vs. uniprot
Match: A0A6H5K4M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M5_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.380e-22
Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    1 EAVRQLCSDGCKTP*EVNEGPGKAWVQDFLKRRPRVSERSTRIYEANRITENEEPCIRRFYEVWGQYVKTEDPKADHLHSTDET 252
            +AVR+LC+DG + P +  +GPGK W+  F +R PRV+ERSTRIYEANRITE+EEP + +FYE W   +    P+A+H+H+TDET
Sbjct:   66 DAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALLDEFKPEANHVHNTDET 149
[Close]
BLAST of mRNA_F-serratus_M_contig6369.17274.1 vs. uniprot
Match: A0A6H5JFM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM5_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.610e-22
Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    1 EAVRQLCSDGCKTP*EVNEGPGKAWVQDFLKRRPRVSERSTRIYEANRITENEEPCIRRFYEVWGQYVKTEDPKADHLHSTDET 252
            +AVR+LC+DG + P +  +GPGK W+  F +R PRV+ERSTRIYEANRITE+EEP + +FYE W   +    P+A+H+H+TDET
Sbjct:   87 DAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALLDEFKPEANHVHNTDET 170
[Close]
BLAST of mRNA_F-serratus_M_contig6369.17274.1 vs. uniprot
Match: A0A6H5K547_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K547_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 9.280e-22
Identity = 46/84 (54.76%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    1 EAVRQLCSDGCKTP*EVNEGPGKAWVQDFLKRRPRVSERSTRIYEANRITENEEPCIRRFYEVWGQYVKTEDPKADHLHSTDET 252
            +AVR+LC+DG + P +  +GPGK W+  FL+R PRV+ERST IYEANRITE+EEP + +FYE W   +     +A+H+H+TDET
Sbjct:   87 DAVRRLCNDGRRIPWDPEKGPGKDWLGGFLRRHPRVAERSTHIYEANRITEDEEPRMVQFYERWAALLDEVKLEANHVHNTDET 170
[Close]
BLAST of mRNA_F-serratus_M_contig6369.17274.1 vs. uniprot
Match: A0A6H5L2E0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E0_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 5.800e-21
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    1 EAVRQLCSDGCKTP*EVNEGPGKAWVQDFLKRRPRVSERSTRIYEANRITENEEPCIRRFYEVWGQYVKTEDPKADHLHSTDET 252
            +AVR+LC+DG +   + +EGPGK W+  FL+R PRV+ERSTRIYEANR+TE+EEP + +F+E W   +    P A+H+H+TDET
Sbjct:   66 DAVRRLCNDGRRIIWDPDEGPGKDWLAGFLRRHPRVAERSTRIYEANRMTEDEEPRMVQFHERWAALLDEVKPAANHVHNTDET 149
[Close]
BLAST of mRNA_F-serratus_M_contig6369.17274.1 vs. uniprot
Match: A0A6H5KKS3_9PHAE (HTH psq-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS3_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.030e-20
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    1 EAVRQLCSDGCKTP*EVNEGPGKAWVQDFLKRRPRVSERSTRIYEANRITENEEPCIRRFYEVWGQYVKTEDPKADHLHSTDET 252
            E VR LC D  KTP +  +GPGK W+  FL+R PRV ER+TRIYEANR+T+  EP I  FY  W   ++   P+ADH+H+TDET
Sbjct:  101 ETVRLLCLDR-KTPWDPEKGPGKDWLAGFLERHPRVRERTTRIYEANRVTDESEPRIVEFYRKWAALLEDLKPEADHVHNTDET 183
[Close]
BLAST of mRNA_F-serratus_M_contig6369.17274.1 vs. uniprot
Match: A0A6H5JRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA3_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.110e-20
Identity = 45/84 (53.57%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    1 EAVRQLCSDGCKTP*EVNEGPGKAWVQDFLKRRPRVSERSTRIYEANRITENEEPCIRRFYEVWGQYVKTEDPKADHLHSTDET 252
            +AVR+LC+DG + P +  +GPGK W+  FL+R  RV+ERSTRI+EAN ITE+EEP + +FYE W   +    P+A+H+H+TDET
Sbjct:   87 DAVRRLCNDGRRIPWDPEKGPGKDWLAGFLRRHLRVAERSTRIFEANMITEDEEPRMVQFYERWAALLDEVKPEANHVHNTDET 170
[Close]
BLAST of mRNA_F-serratus_M_contig6369.17274.1 vs. uniprot
Match: A0A6H5JTL4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL4_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.180e-19
Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:    1 EAVRQLCSDGCKTP*EVNEGPGKAWVQDFLKRRPRVSERSTRIYEANRITENEEPCIRRFYEVWGQYVKTEDPKADHLHSTDETI 255
            E VRQLC+DG   P + ++GPGK+W+Q FL+R  R+S R  RIYEANR+T  E+  +  FY+ W ++V    P  DH+ +TDE++
Sbjct:   88 ERVRQLCNDGRPIPWDPDKGPGKSWLQGFLRRHDRISLRLARIYEANRMTSPEDDRLHNFYKFWQEFVNEHKPAPDHVWNTDESV 172
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6369.17274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L513_9PHAE3.640e-2558.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRY4_9PHAE4.690e-2455.95HTH psq-type domain-containing protein n=4 Tax=Ect... [more]
A0A6H5KJ62_9PHAE1.610e-2358.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4M5_9PHAE1.380e-2255.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFM5_9PHAE4.610e-2255.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K547_9PHAE9.280e-2254.76HTH psq-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5L2E0_9PHAE5.800e-2154.76DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKS3_9PHAE2.030e-2054.76HTH psq-type domain-containing protein (Fragment) ... [more]
A0A6H5JRA3_9PHAE2.110e-2053.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTL4_9PHAE2.180e-1947.06HTH CENPB-type domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6369contigF-serratus_M_contig6369:26146..27316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size741
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6369.17274.1prot_F-serratus_M_contig6369.17274.1Fucus serratus malepolypeptideF-serratus_M_contig6369 26171..26623 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931969.3950124-UTR-F-serratus_M_contig6369:26145..261701622931969.3950124-UTR-F-serratus_M_contig6369:26145..26170Fucus serratus maleUTRF-serratus_M_contig6369 26146..26170 +
1690964081.710342-UTR-F-serratus_M_contig6369:26145..261701690964081.710342-UTR-F-serratus_M_contig6369:26145..26170Fucus serratus maleUTRF-serratus_M_contig6369 26146..26170 +
1622931969.4257522-UTR-F-serratus_M_contig6369:26623..267281622931969.4257522-UTR-F-serratus_M_contig6369:26623..26728Fucus serratus maleUTRF-serratus_M_contig6369 26624..26728 +
1690964081.746262-UTR-F-serratus_M_contig6369:26623..267281690964081.746262-UTR-F-serratus_M_contig6369:26623..26728Fucus serratus maleUTRF-serratus_M_contig6369 26624..26728 +
1622931969.442381-UTR-F-serratus_M_contig6369:27136..271611622931969.442381-UTR-F-serratus_M_contig6369:27136..27161Fucus serratus maleUTRF-serratus_M_contig6369 27137..27161 +
1690964081.756295-UTR-F-serratus_M_contig6369:27136..271611690964081.756295-UTR-F-serratus_M_contig6369:27136..27161Fucus serratus maleUTRF-serratus_M_contig6369 27137..27161 +
1622931969.4649467-UTR-F-serratus_M_contig6369:27183..273161622931969.4649467-UTR-F-serratus_M_contig6369:27183..27316Fucus serratus maleUTRF-serratus_M_contig6369 27184..27316 +
1690964081.7665067-UTR-F-serratus_M_contig6369:27183..273161690964081.7665067-UTR-F-serratus_M_contig6369:27183..27316Fucus serratus maleUTRF-serratus_M_contig6369 27184..27316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931969.4072685-CDS-F-serratus_M_contig6369:26170..266231622931969.4072685-CDS-F-serratus_M_contig6369:26170..26623Fucus serratus maleCDSF-serratus_M_contig6369 26171..26623 +
1690964081.730486-CDS-F-serratus_M_contig6369:26170..266231690964081.730486-CDS-F-serratus_M_contig6369:26170..26623Fucus serratus maleCDSF-serratus_M_contig6369 26171..26623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6369.17274.1

>prot_F-serratus_M_contig6369.17274.1 ID=prot_F-serratus_M_contig6369.17274.1|Name=mRNA_F-serratus_M_contig6369.17274.1|organism=Fucus serratus male|type=polypeptide|length=151bp
MDARPLEKSTKARGRRGFRTSSRGARGCRSEAPASTRPTESPRTRSRASE
GSTRCGDSTSRRRTRRPTICTARMRLLIVVVVVVVYLTLTDPLRIQPWSQ
DRRNQTRSKSPVWFQYKLYCAGSCAKYRQHCKMSRSGGVLSLRRNMFLLL
*
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mRNA from alignment at F-serratus_M_contig6369:26146..27316+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6369.17274.1 ID=mRNA_F-serratus_M_contig6369.17274.1|Name=mRNA_F-serratus_M_contig6369.17274.1|organism=Fucus serratus male|type=mRNA|length=1171bp|location=Sequence derived from alignment at F-serratus_M_contig6369:26146..27316+ (Fucus serratus male)
GAGGCCGTGAGACAGCTCTGCAGCGATGGATGCAAGACCCCTTGAGAAGT
CAACGAAGGCCCGGGGAAGGCGTGGGTTCAGGACTTCCTCAAGAGGCGCC
CGAGGGTGTCGGAGCGAAGCACCCGCATCTACGAGGCCAACCGAATCACC
GAGAACGAGGAGCCGTGCATCCGAAGGTTCTACGAGGTGTGGGGACAGTA
CGTCAAGACGGAGGACCCGAAGGCCGACCATCTGCACAGCACGGATGAGA
CTATTAATAgttGTTGTTGTTGTTGTTGTTTATCTCACATTAACTGATCC
GCTACGAATCCAGCCGTGGTCACAAGATAGACGGAACCAAACCAGATCAA
AGAGTCCAGTGTGGTTTCAGTACAAGCTGTATTGTGCGGGGTCCTGTGCA
AAGTACCGTCAACATTGCAAGATGTCACGATCAGGCGGAGTTCTCTCCCT
GCGCCGAAATATGTTTTTACTTTTGTAGTCTGCAGAGACCGCGATCTCTT
GCGTACCACACACAGCTGCCGTGCGCTGGCTGTAGTCTAGGAGGACCCGA
AGGCCGACCATCTGCACAACACGGATGAGACAGGTGTGAGGATCGACAAG
TAGACTAGTCCAGTTTGGTTTCAGTAGAAGCTGTATTGTGCGGAGTCCTA
TGCAAGGTACCATCAACATTGCAAGATGTCACGATCAGGCGGAGTTCTCT
CCCTGCGCCGAAATATGTTCTTCCTTTTGTAGTCTGCAGAGACCGCGACC
TCTTGCGTACCACACACAGCTGCCGTGCGGTGGCTATAGTCTAGAGTATA
GACTAGTATACAGCAGTAGACTATTAATAGTCGCCAGACATGAAAATTAC
AGAATTACGCGGCTCCTGAGAAACAGCTGTGTCGCGTGATGCCGGTAAGT
GTGTTCCGCACTGCTGCATGCCATCTGCACTAAATATTCATCCGCCCTGA
TCCCGGATGCGCGCTTTTCCCGCCACGTAAATTGGCTCTAGATACCACCC
CGCAAGGTACGAAGACGGAGAAGGCGTTCGCGGAAGCAGGGCAAAAAGTG
GTTGGTTCGATGCGCTCCAACTCCCGAGAGAACGTCACCGTGGTCACCAC
CATCAGCACCGATGGCACCACGTGGAAGCCAACCATCATCTTCAAGGGGC
AGCGTGTGCAAGCGGACTGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6369:26146..27316+

>mRNA_F-serratus_M_contig6369.17274.1 ID=mRNA_F-serratus_M_contig6369.17274.1|Name=mRNA_F-serratus_M_contig6369.17274.1|organism=Fucus serratus male|type=CDS|length=906bp|location=Sequence derived from alignment at F-serratus_M_contig6369:26146..27316+ (Fucus serratus male)
ATGGATGCAAGACCCCTTGAGAAGTCAACGAAGGCCCGGGGAAGGCGTGG
GTTCAGGACTTCCTCAAGAGGCGCCCGAGGGTGTCGGAGCGAAGCACCCG
CATCTACGAGGCCAACCGAATCACCGAGAACGAGGAGCCGTGCATCCGAA
GGTTCTACGAGGTGTGGGGACAGTACGTCAAGACGGAGGACCCGAAGGCC
GACCATCTGCACAGCACGGATGAGACTATTAATAgttGTTGTTGTTGTTG
TTGTTTATCTCACATTAACTGATCCGCTACGAATCCAGCCGTGGTCACAA
GATAGACGGAACCAAACCAGATCAAAGAGTCCAGTGTGGTTTCAGTACAA
GCTGTATTGTGCGGGGTCCTGTGCAAAGTACCGTCAACATTGCAAGATGT
CACGATCAGGCGGAGTTCTCTCCCTGCGCCGAAATATGTTTTTACTTTTG
TAGATGGATGCAAGACCCCTTGAGAAGTCAACGAAGGCCCGGGGAAGGCG
TGGGTTCAGGACTTCCTCAAGAGGCGCCCGAGGGTGTCGGAGCGAAGCAC
CCGCATCTACGAGGCCAACCGAATCACCGAGAACGAGGAGCCGTGCATCC
GAAGGTTCTACGAGGTGTGGGGACAGTACGTCAAGACGGAGGACCCGAAG
GCCGACCATCTGCACAGCACGGATGAGACTATTAATAgttGTTGTTGTTG
TTGTTGTTTATCTCACATTAACTGATCCGCTACGAATCCAGCCGTGGTCA
CAAGATAGACGGAACCAAACCAGATCAAAGAGTCCAGTGTGGTTTCAGTA
CAAGCTGTATTGTGCGGGGTCCTGTGCAAAGTACCGTCAACATTGCAAGA
TGTCACGATCAGGCGGAGTTCTCTCCCTGCGCCGAAATATGTTTTTACTT
TTGTAG
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