mRNA_F-serratus_M_contig1227.1730.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1227.1730.1
Unique NamemRNA_F-serratus_M_contig1227.1730.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1227.1730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1227contigF-serratus_M_contig1227:155702..156018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size317
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929140.4978833-UTR-F-serratus_M_contig1227:155701..1557031622929140.4978833-UTR-F-serratus_M_contig1227:155701..155703Fucus serratus maleUTRF-serratus_M_contig1227 155702..155703 +
1690962721.9065547-UTR-F-serratus_M_contig1227:155701..1557031690962721.9065547-UTR-F-serratus_M_contig1227:155701..155703Fucus serratus maleUTRF-serratus_M_contig1227 155702..155703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929140.5170465-CDS-F-serratus_M_contig1227:155703..1560181622929140.5170465-CDS-F-serratus_M_contig1227:155703..156018Fucus serratus maleCDSF-serratus_M_contig1227 155704..156018 +
1690962721.918477-CDS-F-serratus_M_contig1227:155703..1560181690962721.918477-CDS-F-serratus_M_contig1227:155703..156018Fucus serratus maleCDSF-serratus_M_contig1227 155704..156018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1227.1730.1prot_F-serratus_M_contig1227.1730.1Fucus serratus malepolypeptideF-serratus_M_contig1227 155704..156018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1227.1730.1

>prot_F-serratus_M_contig1227.1730.1 ID=prot_F-serratus_M_contig1227.1730.1|Name=mRNA_F-serratus_M_contig1227.1730.1|organism=Fucus serratus male|type=polypeptide|length=105bp
MKHHHRASSEDSSGGKQALPQSTSGRVTSPPHAGGLSAQSGVSLESLSNS
SAISTPNEKYGASSDCDVNGTGKQSAVIPAAESRRLAEYLPGPQRPKILE
GRTRG
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mRNA from alignment at F-serratus_M_contig1227:155702..156018+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1227.1730.1 ID=mRNA_F-serratus_M_contig1227.1730.1|Name=mRNA_F-serratus_M_contig1227.1730.1|organism=Fucus serratus male|type=mRNA|length=317bp|location=Sequence derived from alignment at F-serratus_M_contig1227:155702..156018+ (Fucus serratus male)
AAATGAAGCACCACCATCGAGCCAGCAGTGAAGACTCCAGCGGTGGAAAG
CAAGCGCTGCCCCAGTCCACATCGGGGAGGGTGACATCACCACCACACGC
TGGAGGCTTGAGTGCACAGAGCGGGGTTTCCCTTGAGAGTCTTTCGAACT
CCTCGGCCATTTCAACGCCGAATGAAAAATATGGGGCCTCAAGCGACTGT
GACGTGAATGGTACAGGAAAACAATCAGCCGTTATACCTGCAGCTGAATC
TCGAAGACTCGCGGAATACCTCCCAGGACCACAACGCCCGAAAATTCTTG
AAGGGCGTACTCGCGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1227:155702..156018+

>mRNA_F-serratus_M_contig1227.1730.1 ID=mRNA_F-serratus_M_contig1227.1730.1|Name=mRNA_F-serratus_M_contig1227.1730.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig1227:155702..156018+ (Fucus serratus male)
ATGAAGCACCACCATCGAGCCAGCAGTGAAGACTCCAGCGGTGGAAAGCA
AGCGCTGCCCCAGTCCACATCGGGGAGGGTGACATCACCACCACACGCTG
GAGGCTTGAGTGCACAGAGCGGGGTTTCCCTTGAGAGTCTTTCGAACTCC
TCGGCCATTTCAACGCCGAATGAAAAATATGGGGCCTCAAGCGACTGTGA
CGTGAATGGTACAGGAAAACAATCAGCCGTTATACCTGCAGCTGAATCTC
GAAGACTCGCGGAATACCTCCCAGGACCACAACGCCCGAAAATTCTTGAA
GGGCGTACTCGCGGGATGAAGCACCACCATCGAGCCAGCAGTGAAGACTC
CAGCGGTGGAAAGCAAGCGCTGCCCCAGTCCACATCGGGGAGGGTGACAT
CACCACCACACGCTGGAGGCTTGAGTGCACAGAGCGGGGTTTCCCTTGAG
AGTCTTTCGAACTCCTCGGCCATTTCAACGCCGAATGAAAAATATGGGGC
CTCAAGCGACTGTGACGTGAATGGTACAGGAAAACAATCAGCCGTTATAC
CTGCAGCTGAATCTCGAAGACTCGCGGAATACCTCCCAGGACCACAACGC
CCGAAAATTCTTGAAGGGCGTACTCGCGGG
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