mRNA_F-serratus_M_contig6343.17247.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6343.17247.1
Unique NamemRNA_F-serratus_M_contig6343.17247.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6343.17247.1 vs. uniprot
Match: D7FWI3_ECTSI (Global transcription factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI3_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 5.460e-7
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = -2 
Query:    2 VTNPVSRVQLAVSKPLLADNGTAAGRNLERAIRLRRDARLGRMSWKGGLCMISATVKDARG 184
            V N V RV+L++SKPLLA++G  +G  LERA+    D RL +M W GGL M++A VKDA+G
Sbjct: 2055 VPNRVRRVKLSLSKPLLANDGKTSGAKLERAVCS--DPRLVKMQWDGGLVMVTAVVKDAKG 2113
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6343.17247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWI3_ECTSI5.460e-754.10Global transcription factor group n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6343contigF-serratus_M_contig6343:16065..16783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size719
Cds size675
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6343.17247.1prot_F-serratus_M_contig6343.17247.1Fucus serratus malepolypeptideF-serratus_M_contig6343 16097..16771 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931964.1909873-UTR-F-serratus_M_contig6343:16064..160961622931964.1909873-UTR-F-serratus_M_contig6343:16064..16096Fucus serratus maleUTRF-serratus_M_contig6343 16065..16096 +
1690964079.1727319-UTR-F-serratus_M_contig6343:16064..160961690964079.1727319-UTR-F-serratus_M_contig6343:16064..16096Fucus serratus maleUTRF-serratus_M_contig6343 16065..16096 +
1622931964.2322404-UTR-F-serratus_M_contig6343:16771..167831622931964.2322404-UTR-F-serratus_M_contig6343:16771..16783Fucus serratus maleUTRF-serratus_M_contig6343 16772..16783 +
1690964079.194223-UTR-F-serratus_M_contig6343:16771..167831690964079.194223-UTR-F-serratus_M_contig6343:16771..16783Fucus serratus maleUTRF-serratus_M_contig6343 16772..16783 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931964.2140837-CDS-F-serratus_M_contig6343:16096..167711622931964.2140837-CDS-F-serratus_M_contig6343:16096..16771Fucus serratus maleCDSF-serratus_M_contig6343 16097..16771 +
1690964079.1852612-CDS-F-serratus_M_contig6343:16096..167711690964079.1852612-CDS-F-serratus_M_contig6343:16096..16771Fucus serratus maleCDSF-serratus_M_contig6343 16097..16771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6343.17247.1

>prot_F-serratus_M_contig6343.17247.1 ID=prot_F-serratus_M_contig6343.17247.1|Name=mRNA_F-serratus_M_contig6343.17247.1|organism=Fucus serratus male|type=polypeptide|length=225bp
MHRPPFQLILPRRASRRRRMARSRLRPAAVPLSARRGFETASCTRETGFV
TVTLAPCTAGADPTPGGLLLPSPLGFELPESTPFGNSPAASIIPAGAALM
ASSDALGPFPPESGTPPASTAAFEASNASSSASATSAALAMVPATSGRAR
PFWPSLTFLPLRANLTPPRDEGFFDLPRRQASLLPLPLPLPPFPSRESTP
APNGSSTAEKTVQLPRNSLTTGSD*
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mRNA from alignment at F-serratus_M_contig6343:16065..16783+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6343.17247.1 ID=mRNA_F-serratus_M_contig6343.17247.1|Name=mRNA_F-serratus_M_contig6343.17247.1|organism=Fucus serratus male|type=mRNA|length=719bp|location=Sequence derived from alignment at F-serratus_M_contig6343:16065..16783+ (Fucus serratus male)
CCCCTCTCGCATCCTTGACAGTTGCGCTAATCATGCACAGGCCACCTTTC
CAGCTCATTCTACCCAGGCGCGCGTCGCGACGGAGGCGGATGGCCCGCTC
TAGATTGCGGCCGGCGGCAGTGCCATTGTCTGCAAGAAGGGGTTTTGAGA
CAGCCAGCTGTACTCGCGAAACCGGGTTCGTCACGGTTACGCTTGCGCCC
TGTACCGCTGGAGCCGATCCGACGCCCGGAGGGCTTCTTCTACCTTCGCC
GTTGGGTTTTGAGCTGCCAGAAAGTACACCCTTCGGTAACTCCCCCGCGG
CGTCGATCATTCCAGCGGGAGCGGCCCTCATGGCGTCTTCGGATGCGCTG
GGCCCCTTTCCGCCGGAATCTGGCACTCCCCCTGCATCCACCGCCGCCTT
CGAAGCTTCTAACGCCTCCTCCTCGGCGTCGGCGACATCTGCAGCCTTGG
CCATGGTGCCAGCAACCAGTGGGCGAGCGCGACCCTTCTGGCCCAGCCTC
ACCTTCTTGCCCTTGAGGGCGAATCTGACTCCGCCACGAGACGAAGGCTT
CTTCGACCTCCCAAGAAGGCAAGCATCCCTGCTGCCACTGCCACTGCCAC
TGCCGCCGTTCCCGTCGCGAGAATCCACTCCAGCTCCGAACGGATCCTCT
ACTGCCGAAAAAACAGTCCAGCTTCCGCGCAACTCGTTGACAACGGGCTC
CGACTGAGCGGTTTCCGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6343:16065..16783+

>mRNA_F-serratus_M_contig6343.17247.1 ID=mRNA_F-serratus_M_contig6343.17247.1|Name=mRNA_F-serratus_M_contig6343.17247.1|organism=Fucus serratus male|type=CDS|length=1350bp|location=Sequence derived from alignment at F-serratus_M_contig6343:16065..16783+ (Fucus serratus male)
ATGCACAGGCCACCTTTCCAGCTCATTCTACCCAGGCGCGCGTCGCGACG
GAGGCGGATGGCCCGCTCTAGATTGCGGCCGGCGGCAGTGCCATTGTCTG
CAAGAAGGGGTTTTGAGACAGCCAGCTGTACTCGCGAAACCGGGTTCGTC
ACGGTTACGCTTGCGCCCTGTACCGCTGGAGCCGATCCGACGCCCGGAGG
GCTTCTTCTACCTTCGCCGTTGGGTTTTGAGCTGCCAGAAAGTACACCCT
TCGGTAACTCCCCCGCGGCGTCGATCATTCCAGCGGGAGCGGCCCTCATG
GCGTCTTCGGATGCGCTGGGCCCCTTTCCGCCGGAATCTGGCACTCCCCC
TGCATCCACCGCCGCCTTCGAAGCTTCTAACGCCTCCTCCTCGGCGTCGG
CGACATCTGCAGCCTTGGCCATGGTGCCAGCAACCAGTGGGCGAGCGCGA
CCCTTCTGGCCCAGCCTCACCTTCTTGCCCTTGAGGGCGAATCTGACTCC
GCCACGAGACGAAGGCTTCTTCGACCTCCCAAGAAGGCAAGCATCCCTGC
TGCCACTGCCACTGCCACTGCCGCCGTTCCCGTCGCGAGAATCCACTCCA
GCTCCGAACGGATCCTCTACTGCCGAAAAAACAGTCCAGCTTCCGCGCAA
CTCGTTGACAACGGGCTCCGACTGAATGCACAGGCCACCTTTCCAGCTCA
TTCTACCCAGGCGCGCGTCGCGACGGAGGCGGATGGCCCGCTCTAGATTG
CGGCCGGCGGCAGTGCCATTGTCTGCAAGAAGGGGTTTTGAGACAGCCAG
CTGTACTCGCGAAACCGGGTTCGTCACGGTTACGCTTGCGCCCTGTACCG
CTGGAGCCGATCCGACGCCCGGAGGGCTTCTTCTACCTTCGCCGTTGGGT
TTTGAGCTGCCAGAAAGTACACCCTTCGGTAACTCCCCCGCGGCGTCGAT
CATTCCAGCGGGAGCGGCCCTCATGGCGTCTTCGGATGCGCTGGGCCCCT
TTCCGCCGGAATCTGGCACTCCCCCTGCATCCACCGCCGCCTTCGAAGCT
TCTAACGCCTCCTCCTCGGCGTCGGCGACATCTGCAGCCTTGGCCATGGT
GCCAGCAACCAGTGGGCGAGCGCGACCCTTCTGGCCCAGCCTCACCTTCT
TGCCCTTGAGGGCGAATCTGACTCCGCCACGAGACGAAGGCTTCTTCGAC
CTCCCAAGAAGGCAAGCATCCCTGCTGCCACTGCCACTGCCACTGCCGCC
GTTCCCGTCGCGAGAATCCACTCCAGCTCCGAACGGATCCTCTACTGCCG
AAAAAACAGTCCAGCTTCCGCGCAACTCGTTGACAACGGGCTCCGACTGA
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