mRNA_F-serratus_M_contig634.17245.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig634.17245.1 vs. uniprot
Match: D7FKE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE9_ECTSI) HSP 1 Score: 223 bits (569), Expect = 1.100e-56 Identity = 287/942 (30.47%), Postives = 385/942 (40.87%), Query Frame = 3
Query: 42 MPKEATCDVECAMKAEALRVLNKKRNNS-----GASLSSSSPGGAVSGRGIKRAFPGSTGREQHTSKGDS-----------------------------ETQLDSDASCDISKSSFMIKGNNKDSKDSA-RRRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYGYLTDLDGGKGLGGGSAAAAIKVAAAVASEVKCGVPSSYFDPSP--ESQKGGCDMKCECYSSATVGEAAASAPPANAAAEATRGVSPSNTTIAAPSAPTAPEGR-EALTASDDTSMECDREVDSPPKISTSGGSGGAVEADNVAAVTSETRQKELEESNDCVGDKEGEGSPQPTQDVGAEVDANGSPQQI-LTGNV---QIMTSSLVQSHLELLARGINMQMRFHHHLRQVVESQQRLQVESLGRQGRHQSTSPRNPGSPRVTRNSADTS----------------------IPATTGPSPIDPS----MGGLREPESNSSTRYEG--LTGDAGFSGEFAGIPDDLVYAATTPGSFWEISGAGKILLSEAMADANGLLGATSAATGQDMKPSSSPSHASDVRRDNAAPGAAHASCEASRDIAPPIDLRYKPRARDAGPNH----------FNAAALPPAHNRPNISGLRVT---------------MPQQGYVPGKYT---------------PRSRVPDAVVGSKPLLPRGPTEALWLRAAHPGMAAAECCAGGCADVETVTDLMTSATPTGTLERESMVLKRHMQAQMEMHRSLLGSSAGQASNGAGER----------FPITSRGLPVHAEVGGGGNVGSNGRIGAVGASVNNGAGGEIGGPMNGGSVRLGVGGAAGSHHHLHEFAETSALLGLLQDNDMLDLNWLDRSGELKP--GDHQVPAP--ARQAGEEQPSLLSFL 2495
MPKEATCDVECAMK E +R+++KKR S G +S G +S + KR S G T S SK +A RRRFVWSVPLHQDFVAAVFD+GLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY YLTDLDGGK LG F P +++ C C+C ++ + + +N+ AE +GR EA + T D K GSGG +A Q G +A G Q++ L G +++ +L+ SHLELLA+GI+MQ++FH+HLR+VVESQQ+LQ + + +QGR V ++ A+ S A + PS G + E N E + G G AG +L +++ W G K+ S A+ G GA +A + + +HA + + AA AA S +++R A R G F+ AA+ A + ++G V P +GY+ G YT P +R AV+G++ L G AH + AA A + + T ++T + +E++ L+RHMQAQM M +S+L + QA+N G+R P E GGG G +G G G +GAG ++G RL S + + SA++GLL +DM D LDR GELK GD P P AR G+E +L SFL
Sbjct: 1 MPKEATCDVECAMKVEEIRIMSKKRKQSQRVGGGNGALASEEGANISAKAAKRPLSNSNGCGAGTQSAKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKHAASRRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYNYLTDLDGGKSLGXXXXXXXXXXXXXXXXXXXXXDDVKDFSPGRGRDAETPECGSSCDCVDTSKLSGGSGIGGGSNSLAET--------------------DGRGEAARSKSTTGFAQAASGDEGAK-----GSGGGAKAS--------------------------------AQLAGGGTEAVGGAQRLQLPGEAAAGEVVNGALLLSHLELLAKGIDMQVKFHNHLREVVESQQQLQAQLVRQQGRE-----------HVPQHPAEFSGXXXXXXXXXXXXXXXXXXXXXXXAASAVGFCPPSDLQYAGSIVGAEGNIRVPKEVHLVGGGCGSGVSTAGYSSNLSDSSSL---VWSGGGEDKLAGSPKEAEQGGR-GAAAAERPRRRERPGVLNHAGASQLEGAA--AADVSMDSARAAASKARPSVADHMRGDGTGERLGDGQQQQQFDPAAMREAFSVQAVAGRVVAPSHSQGLSGRQGAGLAPPRGYMAGDYTLTPKAPEDGGSGRLAPHARGQPAVLGAELLAGEGAL------GAHKSIFAARSPAEARVALASATLAPVTSTGNASNGQETLTLQRHMQAQMSMQQSMLSACNDQATN-FGQRGWCGGXXXXXXXXXXVATPAFGEAGGGALRGGSG-AGKEGGXNGDGAGADLGNSKE--QQRLDSLSLQPS-----DAGDPSAMMGLLPQDDMFDFGMLDREGELKSALGDSTPPGPPVARPNGDEHSTLFSFL 853
BLAST of mRNA_F-serratus_M_contig634.17245.1 vs. uniprot
Match: A0A6H5KUD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUD1_9PHAE) HSP 1 Score: 159 bits (403), Expect = 3.650e-36 Identity = 254/942 (26.96%), Postives = 357/942 (37.90%), Query Frame = 3
Query: 18 AHGEFTLRMPKEATCDVECAMKAEALRVLNKKRNNS------------------GASLSSSSPGGAVSGRGIKRAFPGSTGREQHTSKGDSETQLDSDASCDISKSSFMIKGNNKDSKDSARRRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYGYLTDLDGGKGLGGGSAAAAIKVAAAVASEVKCGVPSSYFDPSPESQKGGCDMKCECYSSATVGEAAASAPPANAAAEATRGVSPSNTTIAAPSAPTAPEGREALTASDDTSMECDREVDSPPKISTSGGSG------------GAVEADNVAAVTSETRQKELEESNDCVGDKEGEGSPQPTQDVGAEVDANGSPQQI-LTGNV--QIMTSSLVQSHLELLARGINMQMRFHHHLRQVVESQQRLQVESLGRQGRHQSTSPRNPGS------------------PRVTRNSADTSIPATTG---PSPIDPSMGGLREPESNSSTRYEGLTGDAGFSG-EFAGIPDDLVYAATTPGSFWEISGAGKILLSEAMADANGLLGATSAATGQDMKPSS---------SPSHASDVRRDNAAPGAAHASCEASRDIAPPI--------------DLRYKPRA-RDAGPNHFNAAALPPAHNRPNISGLR---VTMPQQGYVPGKYTPRSRVP-DAVVGSKPLLPRGPTEALWLR--------AAHPGMAAAECCAGGCADVETVTDLMTSATPTGTLERESMVLKRHMQAQMEMHRSLLGSSAGQASN---------------------GAGERFPITSRGLPVHAEVGGGGNVGSNGRIGAVGASVNNGAGGEIGGPMNGGSVRLGVGGAAGSHHHLHEFAETSALLGLLQDNDMLDLNWLDRSGELK--PGDHQVP--APARQAGEEQPSLLSFL 2495
A GE +LRMPKEATCDVECAMK E +R+++KKR S P +ARRRFVWSVPLHQDFVAAVFD+GLKCASPKLLLEMMPVVDGLTSEHIKSHLQK R L D G+G +++ GC C+C ++ + SGGSG G+ EA + T + +E + G G+ Q G +A G Q++ L G +++ +L+ SHLELLA+GI+MQ++FH+HLR+VVESQQ+LQ + + +QG P++P P + + G PS + + + +N + + L G SG AG L +++ W G + S A+ G A + + +P + + A+DV D A A+ +A + +A I ++ P A R+A A + P+H++ +SG + + PQ+ YVPG YT + P + G PRG L AH + AA A A + ++T + +E++ L+RHMQAQM M +S+L + QA+N G P E GGG G +G +G G+ +GAG ++G N RL S + + SA++GLL +DM D LDR GELK PGD P A AR G+E +L SFL
Sbjct: 4 AKGESSLRMPKEATCDVECAMKVEEIRIMSKKRKQSQRVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPADQLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKPRX--AAXXXXXXXXXXDLKDFSPGRGR--------------------------------DAETPGCGSSCDCVDTSNL----------------------------------------------------------------SGGSGVXXXXXXXXXXXGSGEAARSKSTTGFAQTANRDEGAEGSGG----GAKASAQLAGGGTEAVGGAQRLQLPGEAAGEVVNGALLLSHLELLAKGIDMQVKFHNHLREVVESQQQLQAQLVRQQGTEHL--PKHPAEFSGXXXXXXXXXXXXRAFPXXXXXXXXXTTASAVGVCPPSDLQYAGSNVGAEANNRAPKEVHLVGGGCGSGVSTAGCSSTLSDSSSL---VWSRGGEDRPAGSPKEAEQGGKDAAPAERPRRRERPCALNYEGASQLEAAAAADVSMDAARATAS----KARQSVADHIRGDGTGEHLGDAQQQQQFDPAAMREAFSVQAGAGRVGPSHSQ-GLSGRQGAGLAAPQR-YVPGDYTLTPKAPKNGGAGRVAPQPRGQPAVLGAELLGGEGALGAHKAIFAARSPAEARAALAAAALAPVTSTDNASNGQETLTLQRHMQAQMSMQQSMLSACNDQATNFDRRGWCGGGGXXXXXXXXXXGGXXXXXXXXVATPAFGEAGGGALRGGSG-VGKEGSGNGHGAGADLG--NNKEQQRLDSLSLQPS-----DAGDPSAMMGLLHQDDMFDFGMLDREGELKSAPGDSTPPGSAVARPNGDEHSTLFSFL 824
BLAST of mRNA_F-serratus_M_contig634.17245.1 vs. uniprot
Match: A0A6S6I5N2_9STRA (Phosphorus starvation response 1 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A6S6I5N2_9STRA) HSP 1 Score: 107 bits (268), Expect = 2.070e-20 Identity = 53/85 (62.35%), Postives = 64/85 (75.29%), Query Frame = 3
Query: 279 SSFMIKGNNKDSKDSARRRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYG 533
S I N+K AR+RFVW LH+DFVAA+FD+GLKCASPK +LEMM LT +HIKSHLQKYRLHR+R+REEFL+ +G
Sbjct: 65 SESSINNNSK-----ARKRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFLQHFG 144
BLAST of mRNA_F-serratus_M_contig634.17245.1 vs. uniprot
Match: W7U4E9_9STRA (Two-component response regulator arr12 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4E9_9STRA) HSP 1 Score: 106 bits (264), Expect = 3.950e-20 Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 3
Query: 324 ARRRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYGYLTDLDGGKGLG 569
A++RFVW LH+DFVAA+FD+GLKCASPK ++EMM LT +HIKSHLQKYRLHR+R+REEFL+ +G + G G G
Sbjct: 54 AKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAGTG 135
BLAST of mRNA_F-serratus_M_contig634.17245.1 vs. uniprot
Match: A0A835YR85_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR85_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 7.400e-20 Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 3
Query: 333 RFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 530
RFVW LH FV A+FD+GLK ASP++LL+MMP GLT+EH+KSHLQK+RLHR +SREEFL +
Sbjct: 1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDPQGLTTEHVKSHLQKFRLHRDKSREEFLTKH 66
BLAST of mRNA_F-serratus_M_contig634.17245.1 vs. uniprot
Match: A0A7S3QDX4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QDX4_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 2.030e-16 Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 3
Query: 330 RRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 530
RRF W LH+DFV+AVFD+GLK +SP LLE MP + +TSE IKSHLQKYRLHRQ+S++EF+ SY
Sbjct: 158 RRFAWPDELHRDFVSAVFDVGLKHSSPSALLEQMPKHEDITSERIKSHLQKYRLHRQKSKKEFMSSY 224
BLAST of mRNA_F-serratus_M_contig634.17245.1 vs. uniprot
Match: A0A7S3LD31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LD31_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 2.110e-16 Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 3
Query: 306 KDSKDSARRRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 530
KD+ +RF W LH+DFVAA+FD+GLK +SP +LE MP + +TSE +KSHLQKYR+HR +S++EF+ SY
Sbjct: 76 KDTDPRWSKRFTWPDDLHRDFVAAIFDVGLKHSSPSTILEHMPKHEQITSERVKSHLQKYRIHRIKSKKEFMSSY 150
BLAST of mRNA_F-serratus_M_contig634.17245.1 vs. uniprot
Match: A0A7S2YNK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YNK9_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 2.800e-15 Identity = 55/122 (45.08%), Postives = 73/122 (59.84%), Query Frame = 3
Query: 300 NNKDSKDSA-RRRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY-GYLTDLDGG---------KGLGGGSAAAAIKVAAAVASEVKCG 632
N+K + D +RF W LH+DFV+A+FD+GLK +SP LLE MP + +T+E IKSHLQKYRLHR +S++EF+ +Y L L G K L GGS A + AA + K G
Sbjct: 182 NSKSNNDGRWSKRFTWPEELHRDFVSAIFDVGLKHSSPSTLLEQMPKHEQITTERIKSHLQKYRLHRVKSKQEFMHTYTATLQQLQAGTVGKDGSNNKTLNGGSVAGQLTYAAMTNKDTKGG 303
BLAST of mRNA_F-serratus_M_contig634.17245.1 vs. uniprot
Match: A0A6V0AEB9_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0AEB9_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 4.160e-15 Identity = 54/124 (43.55%), Postives = 75/124 (60.48%), Query Frame = 3
Query: 300 NNKDSKDSAR--RRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY-----GYLTDLDGGKG--LGGGSAAAAIKVAAAVASEVKCGVPSS 644
N K K+ R +RF W LH+DFV+A+FD+GLK ASP ++E MP + +T+E IKSHLQKYRLHR +S++EF+ SY + + + G G L G+ A V +AV K G P +
Sbjct: 287 NKKSKKEDGRWSKRFTWPEDLHRDFVSAIFDVGLKHASPSSIMEHMPKHEQITTERIKSHLQKYRLHRVKSKKEFISSYEASLRNFQQNQNNGNGTSLVAGNGEVAAHVTSAVMGTSKSGSPET 410
BLAST of mRNA_F-serratus_M_contig634.17245.1 vs. uniprot
Match: A0A7S4J0U6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J0U6_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 5.890e-15 Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 3
Query: 252 SDASCDISKSSFMIKGNNKDSKDSARRRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 530
SD + S+S KG D + S +RF W LH++FV+AVFD+GLK +SP +LE M + +TSE IKSHLQKYRLHRQRS+ EF+ SY
Sbjct: 382 SDEGSNSSRSRSRKKGGKADCRWS--KRFQWPDELHREFVSAVFDVGLKHSSPSAILEHMTPNEAITSERIKSHLQKYRLHRQRSKREFMSSY 472 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig634.17245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig634.17245.1 >prot_F-serratus_M_contig634.17245.1 ID=prot_F-serratus_M_contig634.17245.1|Name=mRNA_F-serratus_M_contig634.17245.1|organism=Fucus serratus male|type=polypeptide|length=836bp MAEAMAHGEFTLRMPKEATCDVECAMKAEALRVLNKKRNNSGASLSSSSPback to top mRNA from alignment at F-serratus_M_contig634:393386..402834- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig634.17245.1 ID=mRNA_F-serratus_M_contig634.17245.1|Name=mRNA_F-serratus_M_contig634.17245.1|organism=Fucus serratus male|type=mRNA|length=9449bp|location=Sequence derived from alignment at F-serratus_M_contig634:393386..402834- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig634:393386..402834- >mRNA_F-serratus_M_contig634.17245.1 ID=mRNA_F-serratus_M_contig634.17245.1|Name=mRNA_F-serratus_M_contig634.17245.1|organism=Fucus serratus male|type=CDS|length=5016bp|location=Sequence derived from alignment at F-serratus_M_contig634:393386..402834- (Fucus serratus male)back to top |