mRNA_F-serratus_M_contig6339.17229.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6339.17229.1
Unique NamemRNA_F-serratus_M_contig6339.17229.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6339.17229.1 vs. uniprot
Match: A0A6H5K5Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q8_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.100e-37
Identity = 114/303 (37.62%), Postives = 139/303 (45.87%), Query Frame = 1 
Query:    1 QSLVRGNVSLTRSAVVQVARKGILTLAGDTAFYGNPSNDNGEHIPSSPASAPP-VLRNFGLQHFPRGYSLTLEGGGIVQEPSGSSTMNLPPPL------------------FFSEGLDGAGT---AFEGTGDGRRHPLVVRSGWARFAGAVTALAARNAGDDERVKMNRKWGIVLFQSRGAANFSNMNGLAVHGPPGVSMEMSMR---------------PMP-----------------------GQGKEK--------GDSGGASQIDQWELVVEVAFIECGSMLAYANVSTAGGPCQACL 705
            +S VRG VSL  +A+VQVA  G LTL GDT                         +RN G+   PRG+SLT+  GG+ Q P+G + + LP PL                  F  E   G G      EG G    HPLVV SG  R AGAV A  +R  G+DER+KMNRKW IV F +  AA   +   L+V GPPGVSM ++M+               PMP                       GQG  K        GD G      + EL ++  FIEC SML YANV+TAGGPCQA +
Sbjct:  728 ESEVRGGVSLAETAMVQVAPSGSLTLTGDTTIRRQXXXXXXXXXXXXXXXXXXXAVRNAGVLSLPRGFSLTI-AGGVEQGPTGETAIVLPAPLYAPSPAAGGCPEGSGEENFGGESAGGPGIWCMEGEGWGGATGHPLVVESGATRLAGAVNASVSRGGGEDERMKMNRKWAIVRFGTLDAARNVDTGSLSVRGPPGVSMALAMQNVTLKGGGGGWHDPPPMPAPLQPRDPPSLQDDEEHLLFAGSGQGDAKWTERELRYGDLGD----QRLELFLQAVFIECRSMLLYANVTTAGGPCQASM 1025
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BLAST of mRNA_F-serratus_M_contig6339.17229.1 vs. uniprot
Match: D7FTH4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH4_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 3.420e-26
Identity = 67/156 (42.95%), Postives = 87/156 (55.77%), Query Frame = 1 
Query:  424 RVKMNRKWGIVLFQSRGAANFSNMNGLAVHGPPGVSMEMSMR---------------PMPG-----------QGKEKGDSGGASQIDQ-----------WELVVEVAFIECGSMLAYANVSTAGGPCQACLLNMDCAWCGGKGGGGCTPLADRPIK 780
            R+KMNRKW IV F +  AA   +   L+V GPPGVSM ++M+               PMP              +E+G  G A   ++            ELV++  FIEC SML YANV+TAGGPCQACLLNM+C+WCG + G GC P+ +RP+K
Sbjct: 1410 RMKMNRKWAIVRFGTLDAARNVDTGSLSVRGPPGVSMALAMQNVTLKGGGGGWHAPPPMPDPLQPRDPLSLQDHEERGGWGDAKWTERERSYGDVGDQRLELVLQAVFIECRSMLLYANVTTAGGPCQACLLNMECSWCGDQDGMGCVPVEERPVK 1565
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6339.17229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5Q8_9PHAE1.100e-3737.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTH4_ECTSI3.420e-2642.95Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6339contigF-serratus_M_contig6339:11132..13248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.8
Seed ortholog evalue4.1e-43
Seed eggNOG ortholog2880.D7FTH4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size791
Cds size789
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6339.17229.1prot_F-serratus_M_contig6339.17229.1Fucus serratus malepolypeptideF-serratus_M_contig6339 11132..13248 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931959.7427194-CDS-F-serratus_M_contig6339:11131..112241622931959.7427194-CDS-F-serratus_M_contig6339:11131..11224Fucus serratus maleCDSF-serratus_M_contig6339 11132..11224 -
1690964076.9453473-CDS-F-serratus_M_contig6339:11131..112241690964076.9453473-CDS-F-serratus_M_contig6339:11131..11224Fucus serratus maleCDSF-serratus_M_contig6339 11132..11224 -
1622931959.761927-CDS-F-serratus_M_contig6339:11505..117761622931959.761927-CDS-F-serratus_M_contig6339:11505..11776Fucus serratus maleCDSF-serratus_M_contig6339 11506..11776 -
1690964076.963361-CDS-F-serratus_M_contig6339:11505..117761690964076.963361-CDS-F-serratus_M_contig6339:11505..11776Fucus serratus maleCDSF-serratus_M_contig6339 11506..11776 -
1622931959.7756171-CDS-F-serratus_M_contig6339:12637..130111622931959.7756171-CDS-F-serratus_M_contig6339:12637..13011Fucus serratus maleCDSF-serratus_M_contig6339 12638..13011 -
1690964076.972998-CDS-F-serratus_M_contig6339:12637..130111690964076.972998-CDS-F-serratus_M_contig6339:12637..13011Fucus serratus maleCDSF-serratus_M_contig6339 12638..13011 -
1622931959.787848-CDS-F-serratus_M_contig6339:13197..132481622931959.787848-CDS-F-serratus_M_contig6339:13197..13248Fucus serratus maleCDSF-serratus_M_contig6339 13198..13248 -
1690964076.9837732-CDS-F-serratus_M_contig6339:13197..132481690964076.9837732-CDS-F-serratus_M_contig6339:13197..13248Fucus serratus maleCDSF-serratus_M_contig6339 13198..13248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6339.17229.1

>prot_F-serratus_M_contig6339.17229.1 ID=prot_F-serratus_M_contig6339.17229.1|Name=mRNA_F-serratus_M_contig6339.17229.1|organism=Fucus serratus male|type=polypeptide|length=263bp
QSLVRGNVSLTRSAVVQVARKGILTLAGDTAFYGNPSNDNGEHIPSSPAS
APPVLRNFGLQHFPRGYSLTLEGGGIVQEPSGSSTMNLPPPLFFSEGLDG
AGTAFEGTGDGRRHPLVVRSGWARFAGAVTALAARNAGDDERVKMNRKWG
IVLFQSRGAANFSNMNGLAVHGPPGVSMEMSMRPMPGQGKEKGDSGGASQ
IDQWELVVEVAFIECGSMLAYANVSTAGGPCQACLLNMDCAWCGGKGGGG
CTPLADRPIKLAA
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mRNA from alignment at F-serratus_M_contig6339:11132..13248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6339.17229.1 ID=mRNA_F-serratus_M_contig6339.17229.1|Name=mRNA_F-serratus_M_contig6339.17229.1|organism=Fucus serratus male|type=mRNA|length=2117bp|location=Sequence derived from alignment at F-serratus_M_contig6339:11132..13248- (Fucus serratus male)
CAGTCGCTGGTGCGGGGCAACGTGTCTCTTACGAGGTCGGCCGTGGTGCA
GGTGGGTCTTATCTTTCCCGTTTTTTTTCGACACAAAATCAGGTCTCCGT
CATCTCTGCGAACTGACGGTCGTGGTCATTTTCCCTCTTTTTCATCAAGG
TTTACCGGGCGGTATTGAATCACCCCGTCTTTGTGTGCTTCAACGACGCC
CCGCCGTCCCCCCCCCCCCCCCCTCCCCCAACTAAAGGTGGCGCGCAAGG
GTATCCTTACACTCGCTGGAGACACCGCCTTCTACGGGAATCCCTCCAAC
GATAACGGGGAACATATTCCCTCGTCCCCTGCATCCGCACCGCCGGTCTT
GCGGAACTTCGGACTCCAGCATTTCCCTCGCGGGTACTCGCTGACCTTAG
AAGGCGGCGGGATCGTGCAGGAACCCTCCGGATCTTCAACGATGAACTTG
CCTCCCCCCTTGTTTTTCTCCGAGGGTTTGGATGGCGCTGGGACGGCGTT
CGAGGGGACCGGGGATGGTAGGAGGCATCCCCTCGTGGTGCGCTCGGGGT
GGGCGCGGTTCGCGGGGGCCGTCACCGCTCTCGCGGCAAGGAACGCGGGG
GATGACGAAAGGTTAGTATGTATGTACTTGGTATGTATCTATGTACTTAT
TAACGCGCATTCCGGCCCTGCACTGCTAGTTGTCAAATGCCACTCGCATC
CTCCCAGCGCGAGGGACCGTGTTGTATGGATGTGTGTCTGTTTGTGTGTG
AGTACGTGTGTTGTTGGCCGATGTTAGCTCCGATCGATCCCCCCGGGCTT
CCGGTTGACCTCCGAACAGCCCTCCATCATCTGCGAGGAAACCCTGAGAA
CACCTCCATCTCTCTCTTCTTGATAGCTTGGGCTATTAGTCTAATGGTAC
TTTATACGGTATTAAGAGCACTATCAGTAGCCCTATAGCTCGATTTGTTT
CATGTCAATGTTGAGCTCCGTGTCGCCTCAGAAGCAACCGACACGCCCCT
CCCCCCCCCCTCTAGAAATGTTACAGAAATTCTATAGAACTTCTATAGTT
AATTAATATGATAGTGTAGCAACTCGACCACGTCGTCTTAAGCAAAAAAA
TACTAGAAAATAGGGTTTACAACAATATCCTGATCGACGATGATCTTCCT
TTATTTACAACATATATATGCAACATACATATATGTATATATATATTTAC
ATATATGTATATCCCACCCTTACCATAGAAACGCTGTTTATATATATATA
TATAATATGCATTTTTTTCTGTTAAAACCTCAACCCGTAGCTTGTATGCA
CTCGTTGCTTGATCGCAATCACGAATGAGGCCCATGGTTTCCGGAAAATA
AAAGGAAACATTTCCCAACATTCCCCTCTCCCCCGCCCCCGCCCCAACAA
AAAATCGTGTAACGCCCTCTTTCGGCGCTGTCAAACTCCTATCCACATTT
CTCTTCCACGTCGAGAGAGCAGGGTCAAGATGAATCGAAAGTGGGGGATC
GTTCTTTTCCAATCTCGCGGCGCCGCCAATTTCTCGAACATGAACGGACT
GGCTGTGCACGGCCCACCGGGGGTTTCCATGGAGATGTCCATGCGGCCGA
TGCCGGGGCAAGGGAAAGAGAAGGGTGACAGCGGCGGTGCGTCGCAAATC
GACCAATGGGAGTTGGTTGTCGAGGTGGCGTTCATCGAGTGCGGGAGCAT
GCTGGCCTACGCAAACGTTTCGACGGCGGGGGGGCCGTGTCAGGTGTGAT
GTGCTGTGTTGTGGTTTCCGTTTGGCGTGTGGTGTGTGGTGTGTGCTGTA
TATCCCGAGCTTGTTCTGGAGGTGCAGAGTGGTTAGGTTTGGGCCCGTGT
GAAGTACTTGGCGTTTTGGTATTGGCGAGCCTACTGCCTTTCTGATGAAC
TTTACCGCCGAGACATGACATCAAGACATAGGGCAGCGTACAGGTTTTAA
ATGTAAAGCGTATGGTAATATTTTGCACCACTGTACTCTCGCTGGACGTG
TACCGTGTTCCTACGCCTCTATAGGCATGCCTCCTCAACATGGATTGCGC
ATGGTGCGGGGGCAAAGGTGGGGGCGGCTGCACCCCCCTGGCGGACAGAC
CCATCAAGCTCGCCGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6339:11132..13248-

>mRNA_F-serratus_M_contig6339.17229.1 ID=mRNA_F-serratus_M_contig6339.17229.1|Name=mRNA_F-serratus_M_contig6339.17229.1|organism=Fucus serratus male|type=CDS|length=1578bp|location=Sequence derived from alignment at F-serratus_M_contig6339:11132..13248- (Fucus serratus male)
CAGTCGCTGGTGCGGGGCAACGTGTCTCTTACGAGGTCGGCCGTGGTGCA
GCAGTCGCTGGTGCGGGGCAACGTGTCTCTTACGAGGTCGGCCGTGGTGC
AGGTGGCGCGCAAGGGTATCCTTACACTCGCTGGAGACACCGCCTTCTAC
GGGAATCCCTCCAACGATAACGGGGAACATATTCCCTCGTCCCCTGCATC
CGCACCGCCGGTCTTGCGGAACTTCGGACTCCAGCATTTCCCTCGCGGGT
ACTCGCTGACCTTAGAAGGCGGCGGGATCGTGCAGGAACCCTCCGGATCT
TCAACGATGAACTTGCCTCCCCCCTTGTTTTTCTCCGAGGGTTTGGATGG
CGCTGGGACGGCGTTCGAGGGGACCGGGGATGGTAGGAGGCATCCCCTCG
TGGTGCGCTCGGGGTGGGCGCGGTTCGCGGGGGCCGTCACCGCTCTCGCG
GCAAGGAACGCGGGGGATGACGAAAGGTGGCGCGCAAGGGTATCCTTACA
CTCGCTGGAGACACCGCCTTCTACGGGAATCCCTCCAACGATAACGGGGA
ACATATTCCCTCGTCCCCTGCATCCGCACCGCCGGTCTTGCGGAACTTCG
GACTCCAGCATTTCCCTCGCGGGTACTCGCTGACCTTAGAAGGCGGCGGG
ATCGTGCAGGAACCCTCCGGATCTTCAACGATGAACTTGCCTCCCCCCTT
GTTTTTCTCCGAGGGTTTGGATGGCGCTGGGACGGCGTTCGAGGGGACCG
GGGATGGTAGGAGGCATCCCCTCGTGGTGCGCTCGGGGTGGGCGCGGTTC
GCGGGGGCCGTCACCGCTCTCGCGGCAAGGAACGCGGGGGATGACGAAAG
GGTCAAGATGAATCGAAAGTGGGGGATCGTTCTTTTCCAATCTCGCGGCG
CCGCCAATTTCTCGAACATGAACGGACTGGCTGTGCACGGCCCACCGGGG
GTTTCCATGGAGATGTCCATGCGGCCGATGCCGGGGCAAGGGAAAGAGAA
GGGTGACAGCGGCGGTGCGTCGCAAATCGACCAATGGGAGTTGGTTGTCG
AGGTGGCGTTCATCGAGTGCGGGAGCATGCTGGCCTACGCAAACGTTTCG
ACGGCGGGGGGGCCGTGTCAGGGTCAAGATGAATCGAAAGTGGGGGATCG
TTCTTTTCCAATCTCGCGGCGCCGCCAATTTCTCGAACATGAACGGACTG
GCTGTGCACGGCCCACCGGGGGTTTCCATGGAGATGTCCATGCGGCCGAT
GCCGGGGCAAGGGAAAGAGAAGGGTGACAGCGGCGGTGCGTCGCAAATCG
ACCAATGGGAGTTGGTTGTCGAGGTGGCGTTCATCGAGTGCGGGAGCATG
CTGGCCTACGCAAACGTTTCGACGGCGGGGGGGCCGTGTCAGGCATGCCT
CCTCAACATGGATTGCGCATGGTGCGGGGGCAAAGGTGGGGGCGGCTGCA
CCCCCCTGGCGGACAGACCCATCAAGCTCGCCGCCGCATGCCTCCTCAAC
ATGGATTGCGCATGGTGCGGGGGCAAAGGTGGGGGCGGCTGCACCCCCCT
GGCGGACAGACCCATCAAGCTCGCCGCC
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