mRNA_F-serratus_M_contig633.17223.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig633.17223.1 vs. uniprot
Match: A0A6H5JN42_9PHAE (Ribosome biogenesis protein NOP53 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN42_9PHAE) HSP 1 Score: 389 bits (998), Expect = 3.680e-124 Identity = 253/473 (53.49%), Postives = 314/473 (66.38%), Query Frame = 1
Query: 124 MGRKRGVPARAREKAVAESAAAAVEVEQREALLSAKSDAELFIVDAAGSNSKRRKLQKEAKADKRYTSKVEENIIARKYLRRGQRSGQAAQQAPARRRRISDPWADEDGSHVTTTTAQGDEEGDSGAVAITTSSSSKDCSPLASSSLPSLRGCEEEAGDAGPGILGKPLAIRGSKSSGEGVSGAGVCVGGATGDDDFLQLPPKQGQSLKRPKPSAKDLAKLGVCHPGQSYNPTQEDHQDVLAGAVAVELRRQEAIDEEAKPVSAGMSKETLEHLIGDEEDEGSSEEEGEEG--GRSLGGPTSATGKLTRAQRNKQKRFKAAEHKLLQRRKKKNMLKTIDHISTIQQEVAERERLRDERRRTTRLLKEQKT-LQEQGAEWSSLFGPSAGVAVGSSMPKTNKDIIATRSVPVSLSEELHGSLRQLRAQGSVLLDKVELLKVSKAHPDRRRAKERAKKASKGFRKKYTIKDRYKDD 1533
MGRKR +PARAREK VAE A+A+EVEQ+EA+L K D LF+VDAAGS KRRK++KEAKA K Y SK E+ +I K+L +G+ R RISDPWADED T + +LP E+EA D+ P + K A + ++ + + GG G + F+ P G++ KRPK SA++LAKLGVCHPGQSYNP +EDH DVLA AVAVEL+RQEAI+EE+ P+SAGMS+ETL + G SLG PT A+GKLTRAQRNKQKR KAA+H+L RR +K+M+K+ID ++ +QQEVAE+ERLR+ERR+T RLLK QK ++ +GA +FGPSAGVA S+ + NKD+IA RSVPV+L EELHGSLRQL+AQGSVL DKVELLK +KAHPDRRR KERAKKA KGF+ K+T KDRYKDD
Sbjct: 1 MGRKRRLPARAREKLVAEEVASAMEVEQKEAVLQRKPDKALFVVDAAGSGRKRRKVEKEAKAAK-YLSKNEKKLIVHKFLGKGKPRAVG-------RNRISDPWADEDQDEATN-------------------------NKKPQEALPPSTPGEKEAEDSNPLLSLKGGAAAKATAA---MEESAREPGGRQGGEYFVTSPRVPGRNAKRPKHSARNLAKLGVCHPGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVIXXXXXXXXXXXXXXXXXTTGLSLGKPTPASGKLTRAQRNKQKRAKAAKHELAVRRNRKHMIKSIDQVTALQQEVAEQERLREERRQTKRLLKAQKAKVEAEGAAAGGVFGPSAGVAALSTKRQNNKDVIAGRSVPVNLGEELHGSLRQLKAQGSVLHDKVELLKANKAHPDRRRGKERAKKAPKGFKYKHTYKDRYKDD 437
BLAST of mRNA_F-serratus_M_contig633.17223.1 vs. uniprot
Match: A0A835YY73_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY73_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.150e-21 Identity = 85/247 (34.41%), Postives = 128/247 (51.82%), Query Frame = 1
Query: 799 PGQSYNPTQEDHQDVLAGAVAVELRRQEAIDEEAKPVSAGMSKETLEHLIGDEEDEGSSEEEGEEGGRSLGGPTSA---TGKLTRAQRNKQKRFKAAEHKLLQRRKKKNMLKTIDHISTIQQEVAERERLRDERRRTTRLLKEQKTLQEQGAEWSSLFGPSAGVAVGSSMPKTNKDIIATRSVPVSLSEELHGSLRQLRAQGSVLLDKVELLKVSKAHPDRRRAKERAKKASKGFRKKYTIKDRYKD 1530
PGQSYNP Q DH++ +A AVA+EL+R++A+ P++ G+S ETL L+GD DEGSS +E T A TGK+TR K+ I I E+ ++ + R E R+ ++LK K +P + D++ S+PV+L+EEL GSLRQ+R +GS+L+D+V +LK HPD+++A RAK K +K++ ++RYKD
Sbjct: 120 PGQSYNPEQGDHEEAVAEAVALELKREDAVKAANAPIAQGLSAETLALLVGD--DEGSSSDEDSGXXXXXXDITLAKKQTGKMTRXXXXXXXXXXXXXXXXXXXXXXKSSTHEQHRIKAIGAELEQQAKDRAEARKAKQMLKANKD----------------------GVPLKDADVMQAPSIPVNLAEELSGSLRQMRTRGSLLVDRVAMLKRVGVHPDKQKAAARAKMEKKP-KKRFKFQERYKD 341
BLAST of mRNA_F-serratus_M_contig633.17223.1 vs. uniprot
Match: B8BPY1_THAPS (Ribosome biogenesis protein NOP53 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BPY1_THAPS) HSP 1 Score: 99.0 bits (245), Expect = 4.760e-18 Identity = 85/263 (32.32%), Postives = 132/263 (50.19%), Query Frame = 1
Query: 730 KQGQSLKRPKPSAKDLAKLGVCHPGQSYNPTQEDHQDVLAGAVAVELRRQEAIDEEAKPVSAGMSKETLEHLIGDEEDEGSSEEEGEEGGRSLGGPTSATG---------KLTRAQRNKQKRFKAAEHKLLQRRKKKNMLKTIDHISTIQQEVAERERLRDERRRTTRLLKEQKTLQEQGAE-WSSLFGPSAGVAVGSSMPKTNKDIIATRSVPVSLSEELHG------SLRQLRAQGSVLLDKVELL----KVSKAHPDRRR 1458
K ++ K + +AK L V HPGQSY P +E HQD + A+++E+RR EA + ++KP+S+GMS+ T ++G+ + E E G + G KLTRAQRNKQKR KA + L R++ K I+ + + V E E+L R+ L+++K Q G W+++ + D + S+PV+L+EEL G SLR + +GS++ D++E + VSK D RR
Sbjct: 208 KHLKARKHAQLTAKPTLALEVAHPGQSYRPDKEQHQDAIGEALSIEIRRNEAEEYKSKPISSGMSEFTKRFIVGESDSE---EXXXXXXXXXXXGNVATMGATKLIKKKEKLTRAQRNKQKRVKAEQTALFARKQSKQFNHQINEVHKHSKAVKEEEKLHSVRQSELAQLRDEKKSQPLGKNLWNAV---------------SQVDPLRAPSLPVALTEELEGKSGGKGSLRTVTPKGSLVTDRLESMVARGMVSKKKVDGRR 452
BLAST of mRNA_F-serratus_M_contig633.17223.1 vs. uniprot
Match: K0TBJ2_THAOC (Ribosome biogenesis protein NOP53 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBJ2_THAOC) HSP 1 Score: 89.4 bits (220), Expect = 5.200e-15 Identity = 76/253 (30.04%), Postives = 117/253 (46.25%), Query Frame = 1
Query: 703 DDDFLQLPPKQGQSLKRPKPSAKDLAKLG--------VCHPGQSYNPTQEDHQDVLAGAVAVELRRQEAIDEEAKPVSAGMSKETLEHLIGDEEDEGSSEEEGEEGGRSLGGPTSATGKLTRAQRNKQKRFKAAEHKLLQRRKKKNMLKTIDHISTIQQEVAERERLRDERRRTTRLLKEQKTLQEQGAE-WSSLFGPSAGVAVGSSMPKTNKDIIATRSVPVSLSEELH-----GSLRQLRAQGSVLLDKVE 1419
+DD LP + L + A+ A+L V HPGQSY+P +E HQD + A+++E+RR EA+D + KP+S GMS+ T E +I + + KLTRAQRNKQKR KA E L +RR++K + + + + E + +R LK +K + G W + S I ++PV+L+ E+ G LR L +GS++ D++E
Sbjct: 173 NDDLYNLPAQPAPKLSNKQLKARRNAELAAPNKLAVEVAHPGQSYHPDKEHHQDAIGEALSIEIRRNEALDYKRKPISDGMSQFTKEFIINNSDXXXXXXXXXXTATNVSTKIIKRKEKLTRAQRNKQKRVKAEETALKERRERKKFMHQVHEVKKTSKXXXXXEEEQRQRNEELAKLKHEKKARPLGKNVWEKISQDSP---------------IDAPTLPVALTGEIRSGKEGGGLRTLAPKGSLVTDRLE 410
BLAST of mRNA_F-serratus_M_contig633.17223.1 vs. uniprot
Match: A0A7S2JT46_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JT46_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 8.340e-15 Identity = 76/250 (30.40%), Postives = 126/250 (50.40%), Query Frame = 1
Query: 730 KQGQSLKRPKPSAKDLAKLGVC--HPGQSYNPTQEDHQDVLAGAVAVELRRQEAIDEEAKPVSAGMSKETLEHLI--GDEEDEGSSEEEGEEGGRSLGG---PTSATGKLTRAQRNKQKRFKAAEHKLLQRRKKKNMLKTIDHISTIQQEVAERERLRDERRRTTRLLKEQKTLQEQGAEWSSLFGPSAGVAVGSSMPKTNKDIIATRSVPVSLSEEL-HGSLRQLRAQGSVLLDKVELLKVSKAHPDRR 1455
++ Q +P + K+ V H GQSY P +E HQDV+ A+AVELRR++A++ P+ GMSKETL L D + + +EGG + G P KLTRAQRN+QKR + + ++ ++++ K +++ + TI + + E + ER++ L E+K + G D I ++PV+LS E+ GSLR ++ +GS++ +++E + K RR
Sbjct: 175 RRAQRKSKPHTHKQQQPKVAVDLPHGGQSYQPDKEQHQDVIGEALAVELRRKDAVEYRRTPLWNGMSKETLALLDTRSDSDSDXXXXXXXDEGGIAAAGNFQPKKKKEKLTRAQRNRQKRVRQHDVEMQKQKRLKKFNQSVMEVKTISKTLRREEADKKERKQQLNELLEKKKAEPLGVNLVEKLSSKI-------------DPINAPALPVALSSEIAQGSLRSIKPKGSLMSERLESMAARKMAHKRR 411
BLAST of mRNA_F-serratus_M_contig633.17223.1 vs. uniprot
Match: A0A7S4UQA2_9STRA (Ribosome biogenesis protein NOP53 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UQA2_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 2.540e-13 Identity = 70/237 (29.54%), Postives = 116/237 (48.95%), Query Frame = 1
Query: 757 KPSAKDLAKLGVCHPGQSYNPTQEDHQDVLAGAVAVELRRQEAIDEEAKPVSAGMSKETLEHLIGDEEDEGSSEEEGEEGG---------RSLGGPTSATGKLTRAQRNKQKRFKAAEHKLLQRRKKKNMLKTIDHISTIQQEVAERERLRDERRRTTRLLKEQKTLQEQGAEW-------SSLFGPSAGVAVGSSMPKTNKDIIA--TRSVPVSLSEELHGSLRQLRAQGSVLLDK 1413
K +K + + H GQSYNP + HQDV+ A+++EL+R+EA+ P+S G+SKETL ++ ++E R + K TR QRNKQKR + + QR+K+K L ++ +E+ + ERL+ ER + ++E+K + G + + PS VA+ S + + KD +VP + + SLR++R +GS+L D+
Sbjct: 209 KSLSKPTVPIELAHGGQSYNPDENQHQDVIGEALSIELKREEALAYRKTPISNGLSKETLAIMVHSSDEEXXXXXXXXXXXXXNNDSFQPRLKSKVINRENKKTRVQRNKQKRTREEHASIQQRKKQKTFLHEVNEAKLRAKEIKQEERLQKERAEYLKRVQEEKRKEPLGLNFLHKLSDVDPIHVPSLPVALTSELGRKEKDXXXXXNETVPTATT-----SLRKVRPKGSLLTDR 440
BLAST of mRNA_F-serratus_M_contig633.17223.1 vs. uniprot
Match: B5Y3Y8_PHATC (Ribosome biogenesis protein NOP53 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y3Y8_PHATC) HSP 1 Score: 82.8 bits (203), Expect = 5.600e-13 Identity = 77/255 (30.20%), Postives = 125/255 (49.02%), Query Frame = 1
Query: 784 LGVCHPGQSYNPTQEDHQDVLAGAVAVELRRQEAIDEEAKPVSAGMSKETLEHLIGDEEDEGS-SEEEGEEGGRSLGGPTSATGKLTRAQRNKQKRFKAAEHKLLQRRKKKNMLKTIDHISTIQQEVAERERLRDERRRTTRLLKEQKTLQEQGAEWSSLFGPSAGVAVGSSMPKTNKDIIATRSVPVSLSEELH-GSLRQLRAQGSVLLDKVELLKVSKAHPDRRRAKERAKKASKGFRKKYTIKDRYKDDPVG 1542
+ V GQSY P H+ ++ AV +E+RR +AI+ P++ G+S+ET L+ D + E S+ E E G T KLT+AQRNKQ+R + + L +R++K ++K + + R R E R R K++ Q+ AE G + KD I+T + PV+L E+ SLR ++ +GS+L D++ + ++R KE KK + G R+K +K R ++ G
Sbjct: 177 VDVAKDGQSYRPDPNAHKSIIQKAVDLEMRRGKAIEYNRTPIAQGLSEETKALLVEDTDSEDEESDVENETEDILAGSLPRRTDKLTKAQRNKQRRLRKEQVLLEMKRREKKLMKQVGEVG----------RYRKELTRAEREKKDEVERQKAEAEKKRPLG------IDLEHQHAAKDPISTPTYPVALPNEIQRSSLRTIKPKGSLLTDRMSSF-ADRGLAEKRMRKE-GKKYTHGKRRKLNVKGRKNNESTG 413
BLAST of mRNA_F-serratus_M_contig633.17223.1 vs. uniprot
Match: A0A7S0CMX1_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CMX1_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.910e-11 Identity = 70/231 (30.30%), Postives = 120/231 (51.95%), Query Frame = 1
Query: 784 LGVCHPGQSYNPTQEDHQDVLAGAVAVELRRQEAIDEEAKPVSAGMSKETLEHLIGDEEDEGSSEEEGEEGGRSLGGPTSATGKLTRAQRNKQKRFKAAEHKLLQRRKKKNMLKTIDHISTIQQEVAERERLRDERRRTTRLLKEQKTLQEQGAEWSSLFGPSAGVAVGSSMPKTNKDIIATRSVPVSLSEELHGS---------LRQLRAQGSVLLDKVELLKVSKAHPD 1449
+ V H GQSY+P E HQDV+ A+A+EL+R+EA++ P+ A MS+ETL LI ++ + SEEE + K+ R RN+++R A + L+R+K+K L T+ + + ++V + E E+R + K+++ Q + G + + KD I S+PV+L+ EL+GS LR+++ +G++L ++V L+ K D
Sbjct: 3 IEVAHGGQSYHPDGELHQDVIGEALAMELKREEAMEYLKTPI-AEMSEETLRILINEDSE---SEEEEDIETMETDVYRKKQEKIPRNVRNRRRRHAALQLVYLERKKQKQFLSTVHFVKSAHKKVRKDELTNQEKRDQIQTWKDEEIAQNP-------------LGHGMASKLSEKDPIRFPSLPVALTSELNGSKDNGNVNVPLRRVKPKGNLLEERVYSLRDRKLLTD 216
BLAST of mRNA_F-serratus_M_contig633.17223.1 vs. uniprot
Match: A0A448ZT81_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZT81_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 5.610e-10 Identity = 70/236 (29.66%), Postives = 120/236 (50.85%), Query Frame = 1
Query: 739 QSLKRPKPSAKDLAKLGV--CHPGQSYNPTQEDHQDVLAGAVAVELRRQEAIDEEAKPVSAGMSKETLEHLIGDEEDEGSSEEEGEEGGRSLGGPTSAT------GKLTRAQRNKQKRFKAAEHKLLQRRKKKNMLKTIDHISTIQQEVAERERLRDERRRTTRLLKEQKTLQEQGAEWSSLFGPSAGVAVGSSMPKTNKDIIATRSVPVSLSEELHG--SLRQLRAQGSVLLDKV 1416
+++ P P KD A + V GQSYNP Q+DH++ + A+ VE +R+ A + S GM ET L+GD + SE+E + PT+ K+TRAQRNKQKR +A ++++ QR+K+K + + ++ + + + E ER++T +++ K E+ S G + + + + N T PV+L EL SLR ++ +GS++ D++
Sbjct: 172 KAMPAPLPKNKDRAPVMVDLAGSGQSYNPDQKDHKNAIQKALLVETKRKVAEKNAKESASQGMRPETRALLLGDSD----SEDESDXXXXXXXXPTTEAIAKKRPEKMTRAQRNKQKRIRAEQYEIKQRKKQKQFAHELRGVKSVNRTLXKEEA---ERKKTKEKIEQLKLDTER----------SKGKDLYTQLAEENPRYAPT--YPVALPGELRSGASLRTIKPKGSLVTDRM 388
BLAST of mRNA_F-serratus_M_contig633.17223.1 vs. uniprot
Match: A0A8K1CJF0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJF0_PYTOL) HSP 1 Score: 72.8 bits (177), Expect = 6.810e-10 Identity = 73/232 (31.47%), Postives = 110/232 (47.41%), Query Frame = 1
Query: 730 KQGQSLKRPKPSAKDLAKLGVCHPGQSYNPTQEDHQDVLAGAVAVELRRQEAIDEEAKPVSAGMSKETLEHLIGDEEDEGSSEEEGEEGGRSLGGPTSATGKLTRAQRNKQKRFKAAEHKLLQRRKKKNMLKTIDHISTIQQEVAERERLRDERRRTTRLLKEQKTLQEQGAEWSSLFGPSAGVAVGSSMPKTNKDIIATRSVPVSLSEELHGSLRQLRAQGSVLLDKVELL 1425
K+ LKR + + K+ V PGQSYNP E HQDVLA AVA EL RQ + E+ KP++AG+S+ET +++ D HK +R +K ++K I+ S I Q++ + E+ ++++ +++ EQK L+E+ V V M K R PVSL++EL GSLR LR +G+ LLD+ + L
Sbjct: 132 KKVAQLKRVASTKHKVKKVEVPVPGQSYNPDFETHQDVLAAAVAQELERQAKMKEQLKPLAAGLSEETKQYINSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKA--KRGEKALVKQINTASHILQKIIKDEKQSEKKQELKKVMAEQK-LEEEPL-----------VKVSGKMMKIE------RPTPVSLTDELTGSLRTLRPKGNPLLDRFDSL 343 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig633.17223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig633.17223.1 >prot_F-serratus_M_contig633.17223.1 ID=prot_F-serratus_M_contig633.17223.1|Name=mRNA_F-serratus_M_contig633.17223.1|organism=Fucus serratus male|type=polypeptide|length=477bp MGRKRGVPARAREKAVAESAAAAVEVEQREALLSAKSDAELFIVDAAGSNback to top mRNA from alignment at F-serratus_M_contig633:247521..259591- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig633.17223.1 ID=mRNA_F-serratus_M_contig633.17223.1|Name=mRNA_F-serratus_M_contig633.17223.1|organism=Fucus serratus male|type=mRNA|length=12071bp|location=Sequence derived from alignment at F-serratus_M_contig633:247521..259591- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig633:247521..259591- >mRNA_F-serratus_M_contig633.17223.1 ID=mRNA_F-serratus_M_contig633.17223.1|Name=mRNA_F-serratus_M_contig633.17223.1|organism=Fucus serratus male|type=CDS|length=2862bp|location=Sequence derived from alignment at F-serratus_M_contig633:247521..259591- (Fucus serratus male)back to top |