mRNA_F-serratus_M_contig1223.1722.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1223.1722.1
Unique NamemRNA_F-serratus_M_contig1223.1722.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1223.1722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1223contigF-serratus_M_contig1223:43438..43755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929140.0661023-CDS-F-serratus_M_contig1223:43437..437551622929140.0661023-CDS-F-serratus_M_contig1223:43437..43755Fucus serratus maleCDSF-serratus_M_contig1223 43438..43755 +
1690962721.7663782-CDS-F-serratus_M_contig1223:43437..437551690962721.7663782-CDS-F-serratus_M_contig1223:43437..43755Fucus serratus maleCDSF-serratus_M_contig1223 43438..43755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1223.1722.1prot_F-serratus_M_contig1223.1722.1Fucus serratus malepolypeptideF-serratus_M_contig1223 43438..43755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1223.1722.1

>prot_F-serratus_M_contig1223.1722.1 ID=prot_F-serratus_M_contig1223.1722.1|Name=mRNA_F-serratus_M_contig1223.1722.1|organism=Fucus serratus male|type=polypeptide|length=106bp
PEPIRWRKNIGDLAGQTLPALRRKDFGDDESKYVEAIAALASPAKLPSAD
MPLLPNHFVRPPQVDFVLSELMNPALFVDRRGVVLTGRSGAGKSLMASAV
ARNNTV
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mRNA from alignment at F-serratus_M_contig1223:43438..43755+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1223.1722.1 ID=mRNA_F-serratus_M_contig1223.1722.1|Name=mRNA_F-serratus_M_contig1223.1722.1|organism=Fucus serratus male|type=mRNA|length=318bp|location=Sequence derived from alignment at F-serratus_M_contig1223:43438..43755+ (Fucus serratus male)
CCGGAACCTATTCGGTGGAGAAAGAATATTGGCGACCTCGCAGGCCAAAC
CCTCCCTGCACTTCGGCGCAAAGACTTCGGGGACGATGAGTCCAAGTATG
TAGAGGCTATAGCGGCCCTGGCATCACCGGCTAAGCTTCCCAGCGCCGAC
ATGCCTTTGCTTCCAAACCATTTTGTACGGCCGCCACAGGTGGATTTTGT
GCTATCTGAGCTCATGAATCCAGCCCTTTTTGTCGATCGACGCGGTGTCG
TCCTGACCGGAAGGAGTGGGGCGGGAAAATCGTTGATGGCTTCAGCTGTA
GCTCGTAACAACACTGTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1223:43438..43755+

>mRNA_F-serratus_M_contig1223.1722.1 ID=mRNA_F-serratus_M_contig1223.1722.1|Name=mRNA_F-serratus_M_contig1223.1722.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig1223:43438..43755+ (Fucus serratus male)
CCGGAACCTATTCGGTGGAGAAAGAATATTGGCGACCTCGCAGGCCAAAC
CCTCCCTGCACTTCGGCGCAAAGACTTCGGGGACGATGAGTCCAAGTATG
TAGAGGCTATAGCGGCCCTGGCATCACCGGCTAAGCTTCCCAGCGCCGAC
ATGCCTTTGCTTCCAAACCATTTTGTACGGCCGCCACAGGTGGATTTTGT
GCTATCTGAGCTCATGAATCCAGCCCTTTTTGTCGATCGACGCGGTGTCG
TCCTGACCGGAAGGAGTGGGGCGGGAAAATCGTTGATGGCTTCAGCTGTA
GCTCGTAACAACACTGTCCCGGAACCTATTCGGTGGAGAAAGAATATTGG
CGACCTCGCAGGCCAAACCCTCCCTGCACTTCGGCGCAAAGACTTCGGGG
ACGATGAGTCCAAGTATGTAGAGGCTATAGCGGCCCTGGCATCACCGGCT
AAGCTTCCCAGCGCCGACATGCCTTTGCTTCCAAACCATTTTGTACGGCC
GCCACAGGTGGATTTTGTGCTATCTGAGCTCATGAATCCAGCCCTTTTTG
TCGATCGACGCGGTGTCGTCCTGACCGGAAGGAGTGGGGCGGGAAAATCG
TTGATGGCTTCAGCTGTAGCTCGTAACAACACTGTC
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