mRNA_F-serratus_M_contig6328.17213.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6328.17213.1
Unique NamemRNA_F-serratus_M_contig6328.17213.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6328.17213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6328contigF-serratus_M_contig6328:686..2361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size209
Cds size207
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6328.17213.1prot_F-serratus_M_contig6328.17213.1Fucus serratus malepolypeptideF-serratus_M_contig6328 686..2361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931956.3037252-CDS-F-serratus_M_contig6328:685..7301622931956.3037252-CDS-F-serratus_M_contig6328:685..730Fucus serratus maleCDSF-serratus_M_contig6328 686..730 +
1690964075.3387005-CDS-F-serratus_M_contig6328:685..7301690964075.3387005-CDS-F-serratus_M_contig6328:685..730Fucus serratus maleCDSF-serratus_M_contig6328 686..730 +
1622931956.3258932-CDS-F-serratus_M_contig6328:1443..15651622931956.3258932-CDS-F-serratus_M_contig6328:1443..1565Fucus serratus maleCDSF-serratus_M_contig6328 1444..1565 +
1690964075.350971-CDS-F-serratus_M_contig6328:1443..15651690964075.350971-CDS-F-serratus_M_contig6328:1443..1565Fucus serratus maleCDSF-serratus_M_contig6328 1444..1565 +
1622931956.3514252-CDS-F-serratus_M_contig6328:2321..23611622931956.3514252-CDS-F-serratus_M_contig6328:2321..2361Fucus serratus maleCDSF-serratus_M_contig6328 2322..2361 +
1690964075.3618362-CDS-F-serratus_M_contig6328:2321..23611690964075.3618362-CDS-F-serratus_M_contig6328:2321..2361Fucus serratus maleCDSF-serratus_M_contig6328 2322..2361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6328.17213.1

>prot_F-serratus_M_contig6328.17213.1 ID=prot_F-serratus_M_contig6328.17213.1|Name=mRNA_F-serratus_M_contig6328.17213.1|organism=Fucus serratus male|type=polypeptide|length=69bp
GNKRVLGGPWWHAPREEKIPQPDEEEQDQRLTISTRILHLPRYLCFSVVR
FTPSIGNDSGFEKSNVAID
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mRNA from alignment at F-serratus_M_contig6328:686..2361+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6328.17213.1 ID=mRNA_F-serratus_M_contig6328.17213.1|Name=mRNA_F-serratus_M_contig6328.17213.1|organism=Fucus serratus male|type=mRNA|length=1676bp|location=Sequence derived from alignment at F-serratus_M_contig6328:686..2361+ (Fucus serratus male)
GGCAATAAGCGCGTCCTTGGAGGGCCCTGGTGGCACGCGCCACGAGTACG
GATGCAGCGAGGCATAGCTGTAGGGTAGGGTATGTTATGGTTGGGTTAGA
CTTGTGTGTGCCAGATGTCATTTTTGTACTGGAAGCGCTGCTATTATAGT
AATTTATGAATATGAATATTGAAGAGACACAGTAAAATTAACACCGTCGT
AAGTATCAATATTAACAGTCTAAATTCGAGTTCAATGAAATGTCTGAACG
CATCTAAAAACTTGTTGACTCTACCAGTACCAGTAGTACCAATAGTACCA
GTACCAGTACCAGTTTATACTGGAGACACGAAGGGAAGGGTTTGGTACTC
GACCCATGAGGAGAAGTCAAGTGTGAATTGCATACTATGAATAGTACCTG
GTACAGCTGTGCTCTCATGTATTTCTATGAATTATAATAGCTCCAATCAA
ATCGTAATACAGCATAATATACTGATATGAGGGACTCGGCAGTCTTGAGG
CGGCATTAGCGTCCATCTATTAATGACGGTACTTACAGAGAATGTTGTAC
TGCATATGCATATCACGGCGTGCTTTGACTTGCCAAGCGCCGTGCTTCCA
TGAGTTGCTTTTATCGGCGCCCGTACGCCCGCTCTTCCCGCCTTTTTGGT
GTCTGTTCGTATACTGCATACTGTATACTGTGTACCAGTAATACTTAACT
GGTACTATTAATATTTTAGTACCTCGTACCGCAATGCCTGCTGTACTCGT
ATTAATAGGAAGAGAAGATTCCCCAGCCCGACGAAGAAGAGCAGGATCAG
AGACTCACCATCTCCACGAGGATCCTCCATCTTCCCCGGTACTTGTGCTT
CTCTGTCGTGCGGTTCACGCCAAGTATTGGGTGAGTGGAATGGAGCTATT
CAATACCGTGGATGGGTAGACTAGACTAAGTGAGTACCAGGTATGGTACC
GTTTAAAGAAAAATCTGAATGCATCCAGTCAGGGGGAAAATGTCAAAACA
TTTAGGTCGGATCGGATCGGATCATAGGCTGCAAATATAAAACGACTTCA
TGGCCTTTAAACGGGTTCCCCTATGGTGGTAACATTGGGTCAACATGCAT
TATAATACCGGTGATCACAGTACATTAATCGCCATGCAGGGACACCAAAC
AAAGCATAACAAAAACATTGTACTCAATTGTTGTTGTTGTTGTTGTCTTC
ACATTAAAAACCGTTCTGACCTCTATCCAGTACCTTCTCTTTCTTACTCT
TCATGGCAAAGAAACGAATTTCCGTGGTCACAGGCTAACCCAAACTAAAA
TAATAAAATACCAGTAAAACAAAAAGACCCAGAGAAGGTTCCAACACTAG
CCAAAAAAAATAAAATAATACTGAGTAATAATAAGTTCAGGAAAACAAAA
AGCAGGTTGGGGCAGGAAAAACCCCAACATGGAAGTAGAGCCCATCGCTC
CAAACTCGGAAGCTGAGTCACAAACAATATATATATGTATAGGGGTACCA
ATACAGGTACAAAACTAAATTTGAAGAGGACGCTATCAACGATCACTGTC
GACTGGATGAAGTGTATCAGCATGTCAGCGAGGTTCGGAAAACAGCAATC
GTTCTCACGACGACTTGGGGCGATGTTTTTCCGCAGGAACGACTCGGGCT
TCGAGAAGTCTAACGTGGCCATAGAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig6328:686..2361+

>mRNA_F-serratus_M_contig6328.17213.1 ID=mRNA_F-serratus_M_contig6328.17213.1|Name=mRNA_F-serratus_M_contig6328.17213.1|organism=Fucus serratus male|type=CDS|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig6328:686..2361+ (Fucus serratus male)
GGCAATAAGCGCGTCCTTGGAGGGCCCTGGTGGCACGCGCCACGAGGCAA
TAAGCGCGTCCTTGGAGGGCCCTGGTGGCACGCGCCACGAGAAGAGAAGA
TTCCCCAGCCCGACGAAGAAGAGCAGGATCAGAGACTCACCATCTCCACG
AGGATCCTCCATCTTCCCCGGTACTTGTGCTTCTCTGTCGTGCGGTTCAC
GCCAAGTATTGGGAAGAGAAGATTCCCCAGCCCGACGAAGAAGAGCAGGA
TCAGAGACTCACCATCTCCACGAGGATCCTCCATCTTCCCCGGTACTTGT
GCTTCTCTGTCGTGCGGTTCACGCCAAGTATTGGGAACGACTCGGGCTTC
GAGAAGTCTAACGTGGCCATAGATGAACGACTCGGGCTTCGAGAAGTCTA
ACGTGGCCATAGAT
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