mRNA_F-serratus_M_contig6325.17211.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig6325.17211.1 vs. uniprot
Match: A0A6H5L7G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G9_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.630e-24 Identity = 65/193 (33.68%), Postives = 97/193 (50.26%), Query Frame = 1
Query: 97 RQKFVQSLQRKVNVAIIDNS-----RFPFTNFMVYPPAPAFG---GVLARDHYYRRPCFVWVVELACKRYFPGHP--PCPVCKSSRGVKRKEWCSRRAILRDGSCDLTF-FVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 642
+++F + ++ K++ +I RFPF N +V P F + D +Y++ VW+ E FP PCP C R + D F Y+C CA+ N GK + E+ +F WDAG L +LP ++ + FPFLLTKRS I++ +V + DDLVH KGF A A+ +RQ+H
Sbjct: 45 QERFFEEVKDKIDQSITHEGGGVKGRFPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFL----FPELQAVPCPGCGGKGAPDGWNPQGPRRVFMDHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAH 233
BLAST of mRNA_F-serratus_M_contig6325.17211.1 vs. uniprot
Match: A0A6H5JXN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN0_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.630e-22 Identity = 66/200 (33.00%), Postives = 99/200 (49.50%), Query Frame = 1
Query: 82 SLDHVRQKFVQSLQRKVNVAIIDNS-----RFPFTNFMVYPPAPAFG---GVLARDHYYRRPCFVWVVELACKRYFPGHP--PCPVCKSSRGVKRKEWCS---RRAILRDGSCDLTFFVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 642
S +++F + ++ K++ +I RFPF N +V P F + D +Y++ VW+ E FP PCP C +G W RR + + F Y+C CA+ N GK + E+ +F WDAG L +LP ++ + FPFLLTKRS I++ V + D LVH KGF A+ +RQ+H
Sbjct: 104 STSSAQERFFEEVKDKIDRSITHEGGGVKGRFPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFL----FPELQAVPCPGC-GGKGAP-DGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICKVDRLTDHLVHGKGFSGAAKDIRQAH 297
BLAST of mRNA_F-serratus_M_contig6325.17211.1 vs. uniprot
Match: A0A6H5JPP4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP4_9PHAE) HSP 1 Score: 103 bits (258), Expect = 1.920e-22 Identity = 65/195 (33.33%), Postives = 99/195 (50.77%), Query Frame = 1
Query: 97 RQKFVQSLQRKVNVAIIDNS-----RFPFTNFMVYPPAPAFG---GVLARDHYYRRPCFVWVVELACKRYFPGHP--PCPVCKSSRGVKRKEWCS---RRAILRDGSCDLTFFVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 642
+++F + ++ K++ +I RFPF N +V P F + D +Y++ VW+ E FP PCP C +G W RR + + F Y+C CA+ N GK + E+ +F W AG L +LP ++ + FPFLLTKRS I++ +V + DDLVH KGF A A+ + Q+H
Sbjct: 45 QERFFEEVKDKIDRSITHEGGGVKGRFPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFL----FPELQAVPCPGC-GGKGAP-DGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWGAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNICQAH 233
BLAST of mRNA_F-serratus_M_contig6325.17211.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI) HSP 1 Score: 102 bits (254), Expect = 1.700e-21 Identity = 54/160 (33.75%), Postives = 82/160 (51.25%), Query Frame = 1
Query: 160 FPFTNFMVYPPAPAF---GGVLARDHYYRRPCFVWVVELACKRYFPGHPPCPVCKSSRGVKRKEWCSRRAILRDGSCDLTFFVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEAL 630
FP+ +P P+ G+ +Y + FVWV E + PCP C RR L D C L + Y C C ++N G+P+DER ++TF WDAGVL + ++ + FPF+LTK++AI ++V + DDL+ GF A +++L
Sbjct: 7 FPYNGGWAHPRLPSLHRGAGLPPLGPFYLKKVFVWVPEYLWDEI--EYIPCPHCNKRAQPDGWNTEPRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLATMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFAAASKSL 164
BLAST of mRNA_F-serratus_M_contig6325.17211.1 vs. uniprot
Match: A0A6H5KTU1_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU1_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 7.180e-19 Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1
Query: 385 LTFFVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 642
+T F Y+C CA+ N GK + E+ +F WDAG L +LP ++ + FPFLLTKRS I++ +V + DDLVH KGF A A+ +RQ+H
Sbjct: 8 VTGFRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAH 93
BLAST of mRNA_F-serratus_M_contig6325.17211.1 vs. uniprot
Match: A0A6H5KGK6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK6_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 3.920e-18 Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 394 FVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 642
F Y+C CA+ N GK + E+ +F WDAG L +LP ++ + FPFLLTKRS I++ +V + DDLVH KG A A+ +RQ+H
Sbjct: 11 FRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGLSAAAKNIRQAH 93
BLAST of mRNA_F-serratus_M_contig6325.17211.1 vs. uniprot
Match: A0A6H5KDX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX0_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 6.970e-18 Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 1
Query: 352 RRAILRDGSCDLTFFVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 642
RR + F Y+C CA+ N GK + E+ +F WDAG L +LP ++ + FPFLLTKRS I++ +V + DDLVH K F A A+ +RQ+H
Sbjct: 103 RRVFTEHDVAYVMEFRYKCAKCAEFNKGKQEAEKHKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVNRLADDLVHGKDFSAAAKNIRQAH 199
BLAST of mRNA_F-serratus_M_contig6325.17211.1 vs. uniprot
Match: A0A6H5KJA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA7_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.580e-17 Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 1
Query: 397 VYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 642
VY+C CA+ N GK + E+ +F WDAG L +LP ++ + FPFLLTKRS I++ ++ + D LVH KGF A + +RQ+H
Sbjct: 11 VYKCAKCAEFNKGKQRAEKCKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMLDRLADGLVHGKGFSAGTKNIRQAH 92
BLAST of mRNA_F-serratus_M_contig6325.17211.1 vs. uniprot
Match: D7FSB0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB0_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 3.050e-16 Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 394 FVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 642
F Y+C CA+ N GK + + +F WDAG L +LP ++ + FPFLLTKRS I++ +V + DDLVH K F A A+ + Q+H
Sbjct: 3 FRYKCAKCAEFNKGKQEVGKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEIRMVDRLADDLVHGKDFSAAAKNICQAH 85
BLAST of mRNA_F-serratus_M_contig6325.17211.1 vs. uniprot
Match: A0A6H5KT01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT01_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 6.000e-16 Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 1
Query: 352 RRAILRDGSCDLTFFVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 642
RR + + F Y+C A+ N GK + E WDAG L +LP ++ + FPFLLTKRS I++ +V + DDLVH KGF A A+ +RQ+H
Sbjct: 16 RRVFMDHDVAYVMGFRYKCAKGAEFNKGKQEAETRKTRVNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAH 112 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6325.17211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6325.17211.1 >prot_F-serratus_M_contig6325.17211.1 ID=prot_F-serratus_M_contig6325.17211.1|Name=mRNA_F-serratus_M_contig6325.17211.1|organism=Fucus serratus male|type=polypeptide|length=217bp GAGGTTGLGGGGGSAAGSPGSAPQAIQSLDHVRQKFVQSLQRKVNVAIIDback to top mRNA from alignment at F-serratus_M_contig6325:23746..25147+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6325.17211.1 ID=mRNA_F-serratus_M_contig6325.17211.1|Name=mRNA_F-serratus_M_contig6325.17211.1|organism=Fucus serratus male|type=mRNA|length=1402bp|location=Sequence derived from alignment at F-serratus_M_contig6325:23746..25147+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6325:23746..25147+ >mRNA_F-serratus_M_contig6325.17211.1 ID=mRNA_F-serratus_M_contig6325.17211.1|Name=mRNA_F-serratus_M_contig6325.17211.1|organism=Fucus serratus male|type=CDS|length=1302bp|location=Sequence derived from alignment at F-serratus_M_contig6325:23746..25147+ (Fucus serratus male)back to top |