mRNA_F-serratus_M_contig632.17186.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig632.17186.1
Unique NamemRNA_F-serratus_M_contig632.17186.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig632.17186.1 vs. uniprot
Match: D8LER5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER5_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.850e-28
Identity = 93/195 (47.69%), Postives = 107/195 (54.87%), Query Frame = 1 
Query:   28 GGMNGKSEEEANEFSEERLLDEIESHFGAGSDVWRPWSHGVEDEQEILRR------KRPGSPWSADNGA-------RSAKVPKNHKGALA-----STGAGA---DSSRAGASESPSNGENLSTAAAAELANQAAPIYRSQRVPGARTLAPFLQAVTASQQMKVSHEVCRVMTASVKEYARRILEACLAAARDGRQ 549
            GG++   E E      + L DEIE+ FG GSD+W PWS   E     L R      KRP +P S +  +       R  K  K   G  A     S   GA      R+   E       L  AAA   A Q +P +RSQRVPGAR LAPFLQAVTASQ+MKVSHEVCRVMTA VKEY RRI+EACL  ARDGR+
Sbjct:  283 GGVDCLVEAELLSRDAQLLEDEIEASFGTGSDLWHPWSSREEWGSGRLERSSSQGVKRP-APLSQETNSTGCYANERDTKSLKTEGGVAAXXXXXSAANGALYCPEPRSTTREMKGAAPALEQAAARAAAEQLSPSHRSQRVPGARALAPFLQAVTASQKMKVSHEVCRVMTAGVKEYLRRIIEACLVNARDGRR 476
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BLAST of mRNA_F-serratus_M_contig632.17186.1 vs. uniprot
Match: A0A6H5KRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRA3_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.670e-20
Identity = 92/249 (36.95%), Postives = 115/249 (46.18%), Query Frame = 1 
Query:   28 GGMNGKSEEEANEFSEERLLDEIESHFGAGSDVWRPWSHGVEDEQEILRR------KRPGSPWSADNGA-------RSAKVPKNHKGALASTGAGADSSRAGASESPSNGENLSTAAAAELANQAAPIYRSQRVPGARTLAPFLQAVTASQQMKVSHEVCRVMTASVKE------YARRILEACLAAARDGRQSRASPSCAITADGAAASDASNASDH------------GFIDRRSVLTPAHLRAALE 681
            GG++   E E      + L DEIE+ FG GSD+W PWS   E     L R      KRP +P S +  +       R AK  K      A        +  GA         L  A A   A Q +P +RSQRVPGAR LAPFLQAVTASQ+MKVSHEVCRVMTA VK+         +     +A    G + + + +  +T    AAS   ++               G   R  VLTP HL+ ALE
Sbjct:  314 GGVDCLVEAELLSRDAQLLEDEIEASFGTGSDLWHPWSSREEWGSGRLERSSSRGVKRP-APLSQETDSTGCYANERDAKYLKTESEVAAXXXXXXXXAANGALHCAGAAPALEQAPARAAAEQLSPSHRSQRVPGARALAPFLQAVTASQKMKVSHEVCRVMTAGVKDGMPPAVNPSKASNGAVAPPTGGVKKQVAAASPVTTTPTAASTLMSSPSXXXXXXXAAREVVGEASRGGVLTPGHLQLALE 561
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig632.17186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LER5_ECTSI1.850e-2847.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRA3_9PHAE1.670e-2036.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig632contigF-serratus_M_contig632:126925..129085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size682
Cds size681
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig632.17186.1prot_F-serratus_M_contig632.17186.1Fucus serratus malepolypeptideF-serratus_M_contig632 126925..129085 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931952.0344768-CDS-F-serratus_M_contig632:126924..1270251622931952.0344768-CDS-F-serratus_M_contig632:126924..127025Fucus serratus maleCDSF-serratus_M_contig632 126925..127025 -
1690964073.2855337-CDS-F-serratus_M_contig632:126924..1270251690964073.2855337-CDS-F-serratus_M_contig632:126924..127025Fucus serratus maleCDSF-serratus_M_contig632 126925..127025 -
1622931952.0537283-CDS-F-serratus_M_contig632:127689..1277771622931952.0537283-CDS-F-serratus_M_contig632:127689..127777Fucus serratus maleCDSF-serratus_M_contig632 127690..127777 -
1690964073.2950017-CDS-F-serratus_M_contig632:127689..1277771690964073.2950017-CDS-F-serratus_M_contig632:127689..127777Fucus serratus maleCDSF-serratus_M_contig632 127690..127777 -
1622931952.0722518-CDS-F-serratus_M_contig632:128270..1284521622931952.0722518-CDS-F-serratus_M_contig632:128270..128452Fucus serratus maleCDSF-serratus_M_contig632 128271..128452 -
1690964073.3050392-CDS-F-serratus_M_contig632:128270..1284521690964073.3050392-CDS-F-serratus_M_contig632:128270..128452Fucus serratus maleCDSF-serratus_M_contig632 128271..128452 -
1622931952.0927389-CDS-F-serratus_M_contig632:128775..1290851622931952.0927389-CDS-F-serratus_M_contig632:128775..129085Fucus serratus maleCDSF-serratus_M_contig632 128776..129085 -
1690964073.3158603-CDS-F-serratus_M_contig632:128775..1290851690964073.3158603-CDS-F-serratus_M_contig632:128775..129085Fucus serratus maleCDSF-serratus_M_contig632 128776..129085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig632.17186.1

>prot_F-serratus_M_contig632.17186.1 ID=prot_F-serratus_M_contig632.17186.1|Name=mRNA_F-serratus_M_contig632.17186.1|organism=Fucus serratus male|type=polypeptide|length=227bp
WDGRELKLDGGMNGKSEEEANEFSEERLLDEIESHFGAGSDVWRPWSHGV
EDEQEILRRKRPGSPWSADNGARSAKVPKNHKGALASTGAGADSSRAGAS
ESPSNGENLSTAAAAELANQAAPIYRSQRVPGARTLAPFLQAVTASQQMK
VSHEVCRVMTASVKEYARRILEACLAAARDGRQSRASPSCAITADGAAAS
DASNASDHGFIDRRSVLTPAHLRAALE
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mRNA from alignment at F-serratus_M_contig632:126925..129085-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig632.17186.1 ID=mRNA_F-serratus_M_contig632.17186.1|Name=mRNA_F-serratus_M_contig632.17186.1|organism=Fucus serratus male|type=mRNA|length=2161bp|location=Sequence derived from alignment at F-serratus_M_contig632:126925..129085- (Fucus serratus male)
TGGGACGGACGAGAGCTCAAGCTGGACGGGGGGATGAACGGGAAAAGTGA
AGAGGAGGCCAACGAGTTCTCGGAGGAGCGGCTGCTTGACGAGATTGAGA
GCCACTTCGGGGCGGGCTCTGACGTGTGGCGACCGTGGTCCCACGGCGTC
GAGGACGAGCAGGAAATATTGCGAAGGAAGAGACCGGGCTCGCCATGGTC
GGCAGATAACGGGGCAAGAAGCGCCAAAGTCCCGAAGAATCATAAAGGAG
CGTTGGCATCCACTGGAGCTGGTGCTGATTCGTCGAGGGCTGGCGCATCG
GAAAGTCCTTGTAAGATGTGGTGATCACGCCTAAAAATGGGTCTCGACCC
GTGGACAGGCTCATGTTAGGTTTATGAATCACGGAGGCGTTTTTTCGGAA
AGCACGCTCTCCCTCGCTATGACACACCTCCTCTCTAGCTCGAGGGATGA
AGATATTTACCAAAATAACTCAAAATAGGCCTGAAAACTTGAAACTGGTC
GAAAAATCACGCGAGTTAAGACACTCGGAAGCCTAGCACACGTGGGACCC
ATTAGATGTCGTGATTATTCTTGACTCTTCTTTCCCAACCCGATGCTCAA
CTCTTAACGTTTTTGGATCCGCGCGCGTGGCAGCGAATGGTGAGAATCTC
TCGACCGCCGCCGCGGCAGAGCTAGCGAACCAGGCGGCGCCGATCTACCG
CTCCCAGCGCGTGCCGGGGGCTCGTACACTAGCCCCCTTTCTCCAGGCGG
TGACAGCGTCGCAGCAGATGAAGGTGTCGCACGAAGTGTGCCGTGTCATG
ACCGCGAGCGTGAAGGTGGGCATTGGTCCTCCACCGGGCCTGCGACGCGG
CCGCGATCTTCGTTGTTTTTTTTTGTGCTTTTTCACGGACGCGGTGCAGT
ATCTACGGGGGCCCAGTAGTACCTTTCGCGCGACCCGTGTGCGAGTATTA
AGCGCTGTGCTCAAACAAACCTGGGCATACCCGTGGAGTATCCACTAGTG
CTGTTGACGTGGTGGTTTGTAAAACCGCCGCCGATACGTTGATCCTGTGA
ATAGCTCATCGTTTGCTCACACGTCCAACCGTAATCCCGCCGCAACGCCA
AATCGGCGGAGGCATGCCTTCCTTAGCTTCCCCATGGCATCACCATGGAA
CCTTTGTCGGATGCCTCGTCGATCCTTCCAAACGTCGACTCGGCAACGTG
TGGCGCGTTCGCGACTAGGTTGTCTTGATGTTTGTTTTTTATCTTGACCC
TGCCGCTGCGCCTTCTTGATGCGCCGTTTGTTGTACGCATACGCTGCTGC
CGACGCAGGAGTACGCGAGACGAATCCTCGAGGCGTGCCTCGCCGCCGCA
CGGGATGGGCGGCAGAGCCGAGCATCGCCGTCTTGTGCTATAACAGGTCG
GTGCCCCGGCGGGTAACGAAGGGCAGAGAGTTTTCAGCCATTCTGGAACT
GTGGACGTTCGGAGAACCTTCGGAGAGTGCTTGGAGTTGATGTCGGATCA
GAGGAACATAGCAAGGATTTATTGAAGTGACCTGGCGGGCCACTTTTGTT
GGCCGATTTTCCCCTTCCTTAGGTCGGGATTGTAGCCATCTGAGCGCAAC
TGTCCTCGAGCAGCAATCCTTAGTACGATCTGTGCAGTTATCGTGCTCAA
GGGTCATTTAGCGTGTTTTGTTTTGTTTTGTATTGTCTTCTAACTAACTT
GGAGGTTTTGCACCCTCGTAGGCTTTTTTTTTACGTATTTATTTATTTTA
ACTGCGCGAGTTTTTTTTTTGTGTTACGCCGCGTCGGAGGCCAGCAACAA
CAGTTAACGCGCGTGACTTGTTGCTGCATTTCCGACTCGGGTCTATTTTC
CCCTTCCACTAAACGCTTCTCTCGATGCGATTCTGCCTTCCCATATGAAC
GAACGCTCGGGCGATAGACACTCTTGCTCATTTTGCGTAATCTTTCCCTG
ACCAGCTCTATCGATTGTTCTCGCCGCTCTCCTCTGCCCCACCCACCTTG
AACCTGCACTTGAAAATCTTCGCACACACTCGCAAAACTCTGGAACCGGT
CGACCCGCAGCTGATGGGGCAGCGGCTTCCGACGCATCGAACGCCAGCGA
CCATGGGTTCATCGATAGGCGGTCCGTCTTGACCCCGGCGCACCTCCGAG
CAGCGCTCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig632:126925..129085-

>mRNA_F-serratus_M_contig632.17186.1 ID=mRNA_F-serratus_M_contig632.17186.1|Name=mRNA_F-serratus_M_contig632.17186.1|organism=Fucus serratus male|type=CDS|length=1362bp|location=Sequence derived from alignment at F-serratus_M_contig632:126925..129085- (Fucus serratus male)
TGGGACGGACGAGAGCTCAAGCTGGACGGGGGGATGAACGGGAAAAGTGA
AGAGGAGGCCAACGAGTTCTCGGAGGAGCGGCTGCTTGACGAGATTGAGA
GCCACTTCGGGGCGGGCTCTGACGTGTGGCGACCGTGGTCCCACGGCGTC
GAGGACGAGCAGGAAATATTGCGAAGGAAGAGACCGGGCTCGCCATGGTC
GGCAGATAACGGGGCAAGAAGCGCCAAAGTCCCGAAGAATCATAAAGGAG
CGTTGGCATCCACTGGAGCTGGTGCTGATTCGTCGAGGGCTGGCGCATCG
GAAAGTCCTTTGGGACGGACGAGAGCTCAAGCTGGACGGGGGGATGAACG
GGAAAAGTGAAGAGGAGGCCAACGAGTTCTCGGAGGAGCGGCTGCTTGAC
GAGATTGAGAGCCACTTCGGGGCGGGCTCTGACGTGTGGCGACCGTGGTC
CCACGGCGTCGAGGACGAGCAGGAAATATTGCGAAGGAAGAGACCGGGCT
CGCCATGGTCGGCAGATAACGGGGCAAGAAGCGCCAAAGTCCCGAAGAAT
CATAAAGGAGCGTTGGCATCCACTGGAGCTGGTGCTGATTCGTCGAGGGC
TGGCGCATCGGAAAGTCCTTCGAATGGTGAGAATCTCTCGACCGCCGCCG
CGGCAGAGCTAGCGAACCAGGCGGCGCCGATCTACCGCTCCCAGCGCGTG
CCGGGGGCTCGTACACTAGCCCCCTTTCTCCAGGCGGTGACAGCGTCGCA
GCAGATGAAGGTGTCGCACGAAGTGTGCCGTGTCATGACCGCGAGCGTGA
AGCGAATGGTGAGAATCTCTCGACCGCCGCCGCGGCAGAGCTAGCGAACC
AGGCGGCGCCGATCTACCGCTCCCAGCGCGTGCCGGGGGCTCGTACACTA
GCCCCCTTTCTCCAGGCGGTGACAGCGTCGCAGCAGATGAAGGTGTCGCA
CGAAGTGTGCCGTGTCATGACCGCGAGCGTGAAGGAGTACGCGAGACGAA
TCCTCGAGGCGTGCCTCGCCGCCGCACGGGATGGGCGGCAGAGCCGAGCA
TCGCCGTCTTGTGCTATAACAGGAGTACGCGAGACGAATCCTCGAGGCGT
GCCTCGCCGCCGCACGGGATGGGCGGCAGAGCCGAGCATCGCCGTCTTGT
GCTATAACAGCTGATGGGGCAGCGGCTTCCGACGCATCGAACGCCAGCGA
CCATGGGTTCATCGATAGGCGGTCCGTCTTGACCCCGGCGCACCTCCGAG
CAGCGCTCGAGCTGATGGGGCAGCGGCTTCCGACGCATCGAACGCCAGCG
ACCATGGGTTCATCGATAGGCGGTCCGTCTTGACCCCGGCGCACCTCCGA
GCAGCGCTCGAG
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