mRNA_F-serratus_M_contig6311.17174.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6311.17174.1
Unique NamemRNA_F-serratus_M_contig6311.17174.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6311.17174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6311contigF-serratus_M_contig6311:3177..6170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size310
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931949.311693-CDS-F-serratus_M_contig6311:3176..32631622931949.311693-CDS-F-serratus_M_contig6311:3176..3263Fucus serratus maleCDSF-serratus_M_contig6311 3177..3263 +
1690964071.9700089-CDS-F-serratus_M_contig6311:3176..32631690964071.9700089-CDS-F-serratus_M_contig6311:3176..3263Fucus serratus maleCDSF-serratus_M_contig6311 3177..3263 +
1622931949.3267636-CDS-F-serratus_M_contig6311:5949..61681622931949.3267636-CDS-F-serratus_M_contig6311:5949..6168Fucus serratus maleCDSF-serratus_M_contig6311 5950..6168 +
1690964071.982574-CDS-F-serratus_M_contig6311:5949..61681690964071.982574-CDS-F-serratus_M_contig6311:5949..6168Fucus serratus maleCDSF-serratus_M_contig6311 5950..6168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6311.17174.1prot_F-serratus_M_contig6311.17174.1Fucus serratus malepolypeptideF-serratus_M_contig6311 3177..6168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6311.17174.1

>prot_F-serratus_M_contig6311.17174.1 ID=prot_F-serratus_M_contig6311.17174.1|Name=mRNA_F-serratus_M_contig6311.17174.1|organism=Fucus serratus male|type=polypeptide|length=102bp
QPIAIGIAHGFCQQPRGPSRGQCDCFTPKEKRNLSSREAMDGCCLDFAHP
CEVSIRPEVGTNDESMERFIRGGLRVYDGNIYWPYGGTGFFLSAGLVARI
RG
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mRNA from alignment at F-serratus_M_contig6311:3177..6170+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6311.17174.1 ID=mRNA_F-serratus_M_contig6311.17174.1|Name=mRNA_F-serratus_M_contig6311.17174.1|organism=Fucus serratus male|type=mRNA|length=2994bp|location=Sequence derived from alignment at F-serratus_M_contig6311:3177..6170+ (Fucus serratus male)
CAGCCTATAGCAATCGGGATTGCGCACGGTTTCTGCCAACAGCCCAGAGG
GCCGAGTAGGGGACAGTGTGACTGCTTCACCCCCAAGGTGAGAGAAATTA
GGTCGTTAGGGTTTTGTCGATGGTGATAATTTACACTGAAGTAGCGTGTG
TGCTTTCCCGATAAGTAATGCAATAATATTTGAAAATGTTTATATACTCC
CAAGTAATCCCGTCACTCAAACTCCAATTCTATATATAACGATGACTGAT
CGGTAGTAAATAGGAACAATAATATAATGTGGAACGCGTACAATTAAACA
TTTAGACTAGTCAGCGCTGACTTCTCTAATTGGTTGACTATACTTGTACG
CTAATCACAAAAGCCAGTAGTTGTGGGGTCCGAAGGACTCGGCAGTTTTC
AATCCGAGGCGATCGAATTCCTTGCCAGCGCTACTATTACCGTCAAATGT
TAAGTTCGCTCCATATCACTTTTTCCAACTCTAGTCCACACTCCAACCAG
AGCGTTCAAGGTTCACAGAGCTTTTCCAGAAACCTATCAGCCTGGGACTT
GAACCCACGACCTACCATGTTATATCACAAAGATTAGTCGTGAGTTCGAG
TCCCAAGTCAGCGCTGACTAGTTTAATTGGTTCATAATACGCTTGTCGCA
TCGCAAGTTGTGGGTTCAAGTCCCAGGCTCAGAGGTTCCCGGAAAAGTAG
TGGGGTTCGAAGGGTCCGATATTTTCACTAGCTTTCGTACGAAGCGTATA
ATGAACCAAGTAGACCAGTCAGCATCGACGCTGACTGTTATAGTCTAATT
GGTTAATTATACACTTATCAGAGGAAAGAACTTCGTCGCCGCCACAAGAG
TCTCTTCGTGAAAGGATCCATCGTGGACATCAAATCATCCGTGCACTTGA
TAGCGGGCAGCTATGATGTCGATGATTCCGCCAACACCTCTGCCATCCTC
CCTCTAAAGAGCTATGATGAGTCCCCCTCGGTTCAGGCAGTCAGGAGAGT
GGGTGAAGGATACACCACGCGGCAGGTCATGGTGAATGAATCGACTAGTC
TAACTGGTTAATTGTACGCTTATCAGAGTAAAGAACTTCGTCGGCCTCCT
CGTGAAAGGAACCATCGTGAACCCCAAATCCTCTGTGCACTTGATGGCGG
GCAGCCATCAAGTCGATGATTCCGTCACCGTCTCTTGCCATCCCTACTCT
GTGAAGAGCAATGGGTCTCTCGCGGTTGAGGCAGTCAAGAGAGTAGGTGA
AGGATACACCACGCGGCAGGTCTTCGTGAACGGATCCGATAATGTCAGAA
ACAACCCAAATTTACTATCATTCCAACGACATATTTTTCGATCTGCTACT
ATTGAGTAATCTCTGGCCTCGCTATTTATTCAAAGTCTATCGGCCTATTT
GCTGCTGAGTCGGTTAACGGTTCTTCTTTTTCCTCTCGCATTCCTTTGCT
TGCACTTGTTAGTCTCTTACCAGGGCATATAGGGCGAGTAGAGGATTGAT
GTAAAAAACGTAGGTAGGACACTCTAGTATACGTTCAATAGAGGCAAATG
GGCAAAATAAGGGTATGGAAAGTAAACCGACTGCAGAGAGACGCATCGAA
GACAAGCACAGTGCGGCCAGCTACACCGACTCACAGACTTCCAAGACCAC
ACCGATGCACGGAGACCCCCTCCGCGGATCAAGAGTAGCACCACGAATCC
CCAGTAGTGTGGAACGATTCTACACTCTCTTGAAGAATCCAGCTTCTCCA
CGCTGCTCTTGGCGGCAATCTGTGTGCGTGTTGATATTTTTGTGAAAAGA
ATACCGCGCGCGGTGGGCTCGGCAGAGCGTGTTCAGAAATATCAACCTAC
GAAGTGCATTCGGCGGAATGCGAAATAGCCTACTTGAGAGGGAAAAGTAA
GAGGGGGCAGTCGAAACATGTACAATATCCTCAATCCATAAAGCCTGCGG
AACTGAAGTACTTCGTGGAAACGTTTTGTTCCTGAAGCTCTCGCGAAACA
ATCGATGGATATAAGTCGTACTCGGAGTTTTGTTTCTCGCCTGGGTGCAG
TATGAATAAAACTGAACGAGTATTGACAACAACAGTAGTTGTGCTATTTG
CCCTCGAGTTAAGTCCAGATACACGAGACTGAACGGAAATATAAGACGCC
AAAGCACGACTAACAACATATCGGTAAAAATCGATAGATAAGGGATCAAT
ACAACAGCAGTAGTGTCAAATCACAGAAAAAAAATACTGATGAAAAAAAA
CATGAGGGGACGACAAGCATTATTATTATAGAATGCAATATAACGCGGAA
ATTAACACCGTGAGGAACTCATAATTGGCGACTGCCAAAACAAAAACCCA
GTACATTAGAGAAAAAAACACCTAAAGAAACTCGATATGATAACATAATA
AACAAAAAATCAAGGAGAGGTACATGCGTATAACAAAAGGAGACGATGAG
AAACGATAGGTGACGGGCTCGAAATTATTCCCAAAGCCCAACCCTTATAA
GGTGCTGTCACTGCGCCCCTACCCCGGTTTGCGCCTTGCCTACATCATCT
CCAGGAAGAAGAGTAATTTTCGCATTCTGTCGCGCTTCATGTCGCGCCCC
CAATGCAAAACGAGATATACCGCTCCACCCGACGAGAGAGAGCAATTTGC
GTGACGCGAAATAAAATATCTGGAAGAGACGTTCTTGTACTACTCCCTCC
CGGCGCAGGTTGACATGACCCACACCCTCGGACCACGCGGGTCACCCCAT
TAACTGGTCGCTTCGTGTCGCAGGAAAAACGCAATCTATCTTCTAGGGAG
GCGATGGATGGCTGCTGTCTTGACTTCGCGCACCCCTGTGAAGTCTCTAT
ACGCCCGGAAGTTGGCACCAATGACGAATCCATGGAAAGGTTTATTCGGG
GAGGCCTTAGAGTGTACGACGGTAACATTTACTGGCCGTATGGAGGCACT
GGCTTCTTTTTGAGCGCAGGGCTCGTAGCGAGAATCCGAGGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6311:3177..6170+

>mRNA_F-serratus_M_contig6311.17174.1 ID=mRNA_F-serratus_M_contig6311.17174.1|Name=mRNA_F-serratus_M_contig6311.17174.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig6311:3177..6170+ (Fucus serratus male)
CAGCCTATAGCAATCGGGATTGCGCACGGTTTCTGCCAACAGCCCAGAGG
GCCGAGTAGGGGACAGTGTGACTGCTTCACCCCCAAGCAGCCTATAGCAA
TCGGGATTGCGCACGGTTTCTGCCAACAGCCCAGAGGGCCGAGTAGGGGA
CAGTGTGACTGCTTCACCCCCAAGGAAAAACGCAATCTATCTTCTAGGGA
GGCGATGGATGGCTGCTGTCTTGACTTCGCGCACCCCTGTGAAGTCTCTA
TACGCCCGGAAGTTGGCACCAATGACGAATCCATGGAAAGGTTTATTCGG
GGAGGCCTTAGAGTGTACGACGGTAACATTTACTGGCCGTATGGAGGCAC
TGGCTTCTTTTTGAGCGCAGGGCTCGTAGCGAGAATCCGAGGGGAAAAAC
GCAATCTATCTTCTAGGGAGGCGATGGATGGCTGCTGTCTTGACTTCGCG
CACCCCTGTGAAGTCTCTATACGCCCGGAAGTTGGCACCAATGACGAATC
CATGGAAAGGTTTATTCGGGGAGGCCTTAGAGTGTACGACGGTAACATTT
ACTGGCCGTATGGAGGCACTGGCTTCTTTTTGAGCGCAGGGCTCGTAGCG
AGAATCCGAGGG
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