mRNA_F-serratus_M_contig631.17171.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig631.17171.1
Unique NamemRNA_F-serratus_M_contig631.17171.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig631.17171.1 vs. uniprot
Match: NDUS2_PYLLI (NADH-ubiquinone oxidoreductase 49 kDa subunit n=72 Tax=Phaeophyceae TaxID=2870 RepID=NDUS2_PYLLI)

HSP 1 Score: 95.5 bits (236), Expect = 5.060e-22
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 MALKKKEFEKKLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPNPG 147
            MALKKKEF KKL+HFTINFGPQHPAAHGVLRLILELNGEVVQRADP+ G
Sbjct:    1 MALKKKEFNKKLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIG 49
[Close]
BLAST of mRNA_F-serratus_M_contig631.17171.1 vs. uniprot
Match: A0A4D6E538_9PHAE (NADH dehydrogenase subunit 7 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E538_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.350e-21
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 MALKKKEFEKKLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPNPG 147
            M+LKKKEF KKL+HFTINFGPQHPAAHGVLRLILELNGEVVQRADP+ G
Sbjct:    1 MSLKKKEFNKKLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIG 49
[Close]
BLAST of mRNA_F-serratus_M_contig631.17171.1 vs. uniprot
Match: A0A0U1WNP6_SARFS (NADH dehydrogenase subunit 7 n=22 Tax=Fucales TaxID=3009 RepID=A0A0U1WNP6_SARFS)

HSP 1 Score: 93.6 bits (231), Expect = 2.590e-21
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 MALKKKEFEKKLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPNPG 147
            M  KKKEFEKKL+HFTINFGPQHPAAHGVLRLILELNGEVVQRADP+ G
Sbjct:    1 MVKKKKEFEKKLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIG 49
[Close]
BLAST of mRNA_F-serratus_M_contig631.17171.1 vs. uniprot
Match: A0A8F0K0U0_9PHAE (NADH dehydrogenase subunit 7 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0K0U0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.770e-19
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MALKKKEFEKKLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPNPG 147
            M LK+K+ EK LQHFTINFGPQHPAAHGVLRLILELNGEVVQRADP+ G
Sbjct:    1 MPLKRKKPEKSLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIG 49
[Close]
BLAST of mRNA_F-serratus_M_contig631.17171.1 vs. uniprot
Match: A0A4Y5T7J7_9PHAE (NADH dehydrogenase subunit 7 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7J7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.380e-19
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MALKKKEFEKKLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPNPG 147
            M LK+K+ +K LQHFTINFGPQHPAAHGVLRLILELNGEVVQRADP+ G
Sbjct:    1 MILKQKQKQKSLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIG 49
[Close]
BLAST of mRNA_F-serratus_M_contig631.17171.1 vs. uniprot
Match: Q2TU97_DICDH (NADH dehydrogenase subunit 7 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TU97_DICDH)

HSP 1 Score: 86.7 bits (213), Expect = 8.930e-19
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 MALKKKEFEKKLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPNPG 147
            M LK K+ +K LQHFTINFGPQHPAAHGVLRLILELNGEVVQRADP+ G
Sbjct:    1 MILKNKKQKKNLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIG 49
[Close]
BLAST of mRNA_F-serratus_M_contig631.17171.1 vs. uniprot
Match: A0A8E8PDP1_9PHAE (Nad7 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PDP1_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 6.210e-18
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MALKKKEFEKKLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPNPG 147
            M+LK+  FEKK+++FTINFGPQHPAAHGVLRL+LEL GEVVQRADP+ G
Sbjct:    1 MSLKESTFEKKIKNFTINFGPQHPAAHGVLRLVLELQGEVVQRADPHIG 49
[Close]
BLAST of mRNA_F-serratus_M_contig631.17171.1 vs. uniprot
Match: A0A0K2RX84_9STRA (NADH dehydrogenase subunit 7 n=1 Tax=Triparma laevis TaxID=1534972 RepID=A0A0K2RX84_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.180e-17
Identity = 37/49 (75.51%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MALKKKEFEKKLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPNPG 147
            M+LKK E  +K+++FTINFGPQHPAAHGVLRL+LELNGEVV+RADP+ G
Sbjct:    1 MSLKKSELSRKVKNFTINFGPQHPAAHGVLRLVLELNGEVVERADPHIG 49
[Close]
BLAST of mRNA_F-serratus_M_contig631.17171.1 vs. uniprot
Match: A0A8E7MIM3_9STRA (NADH dehydrogenase subunit 7 n=1 Tax=Attheya longicornis TaxID=451786 RepID=A0A8E7MIM3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.180e-17
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 MALKKKEFEKKLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPNPG 147
            M LKKK   KK+++FTINFGPQHPAAHGVLRL+LELNGEVV+RADP+ G
Sbjct:    1 MTLKKKNLIKKIKNFTINFGPQHPAAHGVLRLVLELNGEVVERADPHIG 49
[Close]
BLAST of mRNA_F-serratus_M_contig631.17171.1 vs. uniprot
Match: A0A891GQ75_THANO (Uncharacterized protein n=1 Tax=Thalassiosira nordenskioeldii TaxID=83372 RepID=A0A891GQ75_THANO)

HSP 1 Score: 81.6 bits (200), Expect = 1.700e-17
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 MALKKKEFEKKLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPNPG 147
            M LKKK   KK+++FTINFGPQHPAAHGVLRL++ELNGE+V RADP+ G
Sbjct:    1 MTLKKKSLLKKIKNFTINFGPQHPAAHGVLRLVIELNGEIVNRADPHIG 49
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig631.17171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
NDUS2_PYLLI5.060e-2291.84NADH-ubiquinone oxidoreductase 49 kDa subunit n=72... [more]
A0A4D6E538_9PHAE1.350e-2189.80NADH dehydrogenase subunit 7 n=2 Tax=Laminariaceae... [more]
A0A0U1WNP6_SARFS2.590e-2189.80NADH dehydrogenase subunit 7 n=22 Tax=Fucales TaxI... [more]
A0A8F0K0U0_9PHAE1.770e-1985.71NADH dehydrogenase subunit 7 n=1 Tax=Analipus japo... [more]
A0A4Y5T7J7_9PHAE3.380e-1983.67NADH dehydrogenase subunit 7 n=1 Tax=Dictyopteris ... [more]
Q2TU97_DICDH8.930e-1983.67NADH dehydrogenase subunit 7 n=1 Tax=Dictyota dich... [more]
A0A8E8PDP1_9PHAE6.210e-1877.55Nad7 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=... [more]
A0A0K2RX84_9STRA1.180e-1775.51NADH dehydrogenase subunit 7 n=1 Tax=Triparma laev... [more]
A0A8E7MIM3_9STRA1.180e-1777.55NADH dehydrogenase subunit 7 n=1 Tax=Attheya longi... [more]
A0A891GQ75_THANO1.700e-1773.47Uncharacterized protein n=1 Tax=Thalassiosira nord... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig631contigF-serratus_M_contig631:243961..244110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score77.4
Seed ortholog evalue2.1e-12
Seed eggNOG ortholog263815.XP_007872259.1
Preferred nameNdufS2
KEGG rclassRC00061
KEGG koko:K03935
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.Respiratory-chain NADH dehydrogenase, 49 Kd subunit
EggNOG OGs38E8K@33154,3MDVC@451866,3NVGU@4751,3QNNX@4890,COG0649@1,KOG2870@2759
EC1.6.5.3,1.6.99.3
COG Functional cat.C
Best tax levelTaphrinomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size150
Cds size150
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931949.0917122-CDS-F-serratus_M_contig631:243960..2441101622931949.0917122-CDS-F-serratus_M_contig631:243960..244110Fucus serratus maleCDSF-serratus_M_contig631 243961..244110 +
1690964071.853653-CDS-F-serratus_M_contig631:243960..2441101690964071.853653-CDS-F-serratus_M_contig631:243960..244110Fucus serratus maleCDSF-serratus_M_contig631 243961..244110 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig631.17171.1prot_F-serratus_M_contig631.17171.1Fucus serratus malepolypeptideF-serratus_M_contig631 243961..244110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig631.17171.1

>prot_F-serratus_M_contig631.17171.1 ID=prot_F-serratus_M_contig631.17171.1|Name=mRNA_F-serratus_M_contig631.17171.1|organism=Fucus serratus male|type=polypeptide|length=50bp
MALKKKEFEKKLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPNPG*
back to top

mRNA from alignment at F-serratus_M_contig631:243961..244110+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig631.17171.1 ID=mRNA_F-serratus_M_contig631.17171.1|Name=mRNA_F-serratus_M_contig631.17171.1|organism=Fucus serratus male|type=mRNA|length=150bp|location=Sequence derived from alignment at F-serratus_M_contig631:243961..244110+ (Fucus serratus male)
ATGGCGTTAAAAAAAAAGGAATTTGAAAAAAAACTTCAGCATTTTACTAT
AAATTTTGGACCCCAACATCCCGCAGCACACGGGGTTCTTCGTCTTATTC
TTGAATTAAATGGTGAAGTTGTTCAGCGGGCCGATCCCAATCCCGGGTAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig631:243961..244110+

>mRNA_F-serratus_M_contig631.17171.1 ID=mRNA_F-serratus_M_contig631.17171.1|Name=mRNA_F-serratus_M_contig631.17171.1|organism=Fucus serratus male|type=CDS|length=300bp|location=Sequence derived from alignment at F-serratus_M_contig631:243961..244110+ (Fucus serratus male)
ATGGCGTTAAAAAAAAAGGAATTTGAAAAAAAACTTCAGCATTTTACTAT
AAATTTTGGACCCCAACATCCCGCAGCACACGGGGTTCTTCGTCTTATTC
TTGAATTAAATGGTGAAGTTGTTCAGCGGGCCGATCCCAATCCCGGGTAA
ATGGCGTTAAAAAAAAAGGAATTTGAAAAAAAACTTCAGCATTTTACTAT
AAATTTTGGACCCCAACATCCCGCAGCACACGGGGTTCTTCGTCTTATTC
TTGAATTAAATGGTGAAGTTGTTCAGCGGGCCGATCCCAATCCCGGGTAA
back to top