mRNA_F-serratus_M_contig631.17169.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig631.17169.1
Unique NamemRNA_F-serratus_M_contig631.17169.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig631.17169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig631contigF-serratus_M_contig631:194236..198487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue3.5e-07
Seed eggNOG ortholog44056.XP_009040197.1
KEGG koko:K16465
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0028@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons5
Model size750
Cds size747
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig631.17169.1prot_F-serratus_M_contig631.17169.1Fucus serratus malepolypeptideF-serratus_M_contig631 194237..198487 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931948.473344-CDS-F-serratus_M_contig631:194236..1944491622931948.473344-CDS-F-serratus_M_contig631:194236..194449Fucus serratus maleCDSF-serratus_M_contig631 194237..194449 -
1690964071.5079002-CDS-F-serratus_M_contig631:194236..1944491690964071.5079002-CDS-F-serratus_M_contig631:194236..194449Fucus serratus maleCDSF-serratus_M_contig631 194237..194449 -
1622931948.506586-CDS-F-serratus_M_contig631:197227..1973111622931948.506586-CDS-F-serratus_M_contig631:197227..197311Fucus serratus maleCDSF-serratus_M_contig631 197228..197311 -
1690964071.5458717-CDS-F-serratus_M_contig631:197227..1973111690964071.5458717-CDS-F-serratus_M_contig631:197227..197311Fucus serratus maleCDSF-serratus_M_contig631 197228..197311 -
1622931948.5272834-CDS-F-serratus_M_contig631:197574..1976851622931948.5272834-CDS-F-serratus_M_contig631:197574..197685Fucus serratus maleCDSF-serratus_M_contig631 197575..197685 -
1690964071.5847075-CDS-F-serratus_M_contig631:197574..1976851690964071.5847075-CDS-F-serratus_M_contig631:197574..197685Fucus serratus maleCDSF-serratus_M_contig631 197575..197685 -
1622931948.5425377-CDS-F-serratus_M_contig631:198034..1981361622931948.5425377-CDS-F-serratus_M_contig631:198034..198136Fucus serratus maleCDSF-serratus_M_contig631 198035..198136 -
1690964071.6020732-CDS-F-serratus_M_contig631:198034..1981361690964071.6020732-CDS-F-serratus_M_contig631:198034..198136Fucus serratus maleCDSF-serratus_M_contig631 198035..198136 -
1622931948.556721-CDS-F-serratus_M_contig631:198250..1984871622931948.556721-CDS-F-serratus_M_contig631:198250..198487Fucus serratus maleCDSF-serratus_M_contig631 198251..198487 -
1690964071.6165743-CDS-F-serratus_M_contig631:198250..1984871690964071.6165743-CDS-F-serratus_M_contig631:198250..198487Fucus serratus maleCDSF-serratus_M_contig631 198251..198487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig631.17169.1

>prot_F-serratus_M_contig631.17169.1 ID=prot_F-serratus_M_contig631.17169.1|Name=mRNA_F-serratus_M_contig631.17169.1|organism=Fucus serratus male|type=polypeptide|length=249bp
ILLLAALALLCHNCLGTGGEHNTSPAEYIKADISPDREAEGATNSPRILT
VLTTYNKRTPFIKAYREAAAGREDGLDPLIFVTSDEEDIDQDGVVDYKFG
EPTHHRLLAAIHESNSRYKGQFDWIAAGDDDTVFMYRRAMAFLRHIDPTL
PIAIGIAHGFCQQPKGPIRGQCDCFTPEEKRNLSSSKAMDGCCLDFAHPC
EVSIRPEVGTNDESMEMFLRGGLRVYDGNIYWPYGGTGFFLSAGLVARI
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mRNA from alignment at F-serratus_M_contig631:194236..198487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig631.17169.1 ID=mRNA_F-serratus_M_contig631.17169.1|Name=mRNA_F-serratus_M_contig631.17169.1|organism=Fucus serratus male|type=mRNA|length=4252bp|location=Sequence derived from alignment at F-serratus_M_contig631:194236..198487- (Fucus serratus male)
ATTCTTTTGCTGGCAGCACTCGCCCTATTATGCCACAATTGCCTTGGTAC
TGGAGGCGAGCATAACACCTCGCCGGCGGAATATATCAAGGCGGATATCT
CTCCCGATAGAGAAGCTGAGGGGGCAACGAACTCACCGCGAATTCTCACG
GTGCTCACTACCTACAATAAACGGACGCCGTTCATTAAGGCCTACCGTGA
AGCAGCTGCTGGCCGAGAAGATGGATTGGATCCTTTGGTGAGTGGGGGGG
GGTAGCATCCGAACTCCCATCATTATTTTAGCCGCTCGTCTTCCGAAGAA
CCGTACCTATATTTTCGTCTTACGCCTCCTCTGTTTTCGACAAACGAGCA
GATATTTGTCACCAGTGATGAGGAGGATATCGATCAAGACGGCGTTGTCG
ACTACAAGTTCGGAGAACCTACCCACCATCGACTGTTGGCAGCAATACAT
GAGGTGAGGGTCTCGCGCAGTTGCCTGGGAGTAGACAGCTAGCTCCATGT
TGGCATACTACTTCACCTTCAAGTTTAGGTGCCTTATTCATACGGTAGAT
ATCAGCCTACAACAACTGACCTGTTTGTTTTCGAAATAATCTACCAGTCA
GTAGTAGTACGGTATGAATAATATACTTGAAAACTTCTCGACACGAGGTG
GTCAACGCTTATGAAAACCGCTGTATTTCATATTTCAATCAGAACAAGTT
TGGTCTGTTGATCGTTTCATCATGTATTTAATGTCCGGTATTATAGCCGC
ATGCGTTGTCGCCAATATTTCACGCCGACTATTATTTCCTTCTCCGATCC
AGTCAAATTCGAGGTATAAAGGCCAGTTCGACTGGATTGCCGCTGGAGAC
GACGACACGGTCTTCATGTACAGACGCGCCATGGCCTTTCTCCGACACAT
CGACCCCACACTGGTAGGTCTATTTTCTTTTTTGCTTTGCAGCAACGCTC
ATCATCTGATTCCTATTTGCGGCCGATAAACAGTATCGTTCCAGGCATCT
GCTACGTTCATGCGTATGTGGGCCTCATTGGTCCACGCAATCTTCTGTTG
AACTGTTACAACAGTATCTTGTTCTCGCATGCGGAGGTTGCGAAGACATA
CATACACCGAAATGGATGGTGACATGCCATGATTTCCTTTTGTCTCTTGC
CTCTCTGCGAAATATGCTTTGCACAGCCTATAGCAATCGGGATTGCGCAC
GGTTTCTGCCAACAGCCCAAAGGGCCGATTAGGGGACAGTGTGACTGCTT
TACCCCCGAGGTGAGAGAAATTAGGTCGTTAGGGTTTTGTCGATGGTGAT
AATTTACACTGAAGTAGCGTGTGTGCTTTCCCGATAAGTAATGCAATAAT
ATTTGAAAATGTATATACTCCCAAGTAATCCCGTCACTCAAACTCCAATT
CTATATAACGATGAGTGATCGGTAGTAAATAGGAACAATAATATAATGTG
GAACGCGTATATTAAATATTTAGACAAATCATCGCTGACTTCTCTAATTG
GCTGACTACACGCTAATCACAAAAGCCAGTAGTTGTGGGGTCCGAAGGAC
TCGGCAGTTTTCAATCCGCGGCGATCGGATTCCCTTGCCAGCGCTACTAT
TACCGTCAAATGTTAAGTTCGCTCCATATCACTTTTTGCAACTCTAGTCC
ACTCAAACCAGAGCGTTTAAGGTTTACAGAGCTTTTCCAGAAACCTATCA
GCCTGGGACTTGAACCCACGACCTACCATGTTGTAACACAAAGATTAGTC
GTGAGTTCGAGTCCCAAGTCAGCGCTGACTAGTTTAATTGGTTCATAATA
CGCTTATCGCATCGCAAGTCGTGGGTTCAAGTCCCAGGCTCAGAGGTTCC
TGGAAAAGTCGTGGGGTCCGAAGGGTCCGACATTTTCACTAGCTTTTGTA
CGAAGCGTATAATGAACCAAGTAGACCAGTCAGCATCGACGCTGACTGTT
ATAATCTAATTAGTTAATTATACACTTATCAGAGGAAAGAACTTCGTCGC
CGCCACAAGGGTCTCTTCGTGAAAGGAACAATCGTGGACATCAAATCCTC
CGTGCACTTGATAGTGGGTAGCTATGATGTCGATGATTCCGCCAACACCT
CTGCCATCCTCCCTCTAAAGAGCTATGCTGAGTCCCTCACGGTTCAGGCA
GTCAGGAGAGTGGGTGAAGGATACACCACGCGGCAGGTCATGGTGAACGA
ATCCACTAGTCTAACTGGTTAGTTGTACGCTTATCAGAGTAAAGAACTTC
GTCGGCCTCCTCGTGATAGGAACCATCGTGAACCCCAAATCCGCTGTGCA
CTTGATAGCGGGCAGCTATGATGTCGATGATTCCGTCACCGTCTCTTGCC
ATCCCTACTCTGTGAAGAGCAGTGGGTCTCTCGCGGTTGAGGCAGTCAAG
AGAGTAGGTGAAGGATACACCACGCGGCAGGTCTTCGTGAACGGATCCGA
TAATGTCAGAAGCAATCCAAATTTACTATCATTCCAACGACATATTTTTC
GATCTGCTATTATTGAGCAATCTCTGGCCTCGCTATTTATTCAAAGTCTT
TTGGCCTATTTGCTGCTGAGTCGGTTAACGGTTCTTCTGTTTCCTCTCGC
ATTCCTTTGCTTGCACTTGTCAGTCTCTTACCAGGGCATATAGGGCGAGT
AGAGGATTGATGTAAAAAACGTAGGTAGGACACTCTAGTATACGTTCAAT
AGAGGCAAATGGGCAAAATAAGGGTATGGAAAGTAAACCGACTGCAGAGA
GACGCATCGAAGACAAGCACAGTGCGACCAGCTACACCGACTCACAGACT
TCCAAGACCACACCGATGCACGGAGACCCCCTCCACGGATCAAGAGTAGC
ACCACGAATCCCCAGTAGTGTGGAACGATTCTACACTCTCTTGAAGAATC
CAGCTTCTCCGCGCTGCTCTTGGCGGCAATTTGTTTGCGTGTTGATATTT
TTGTGAAAGGAATAGCGCGGGCGGTGGGCTCGGCAGAGGGCGTGTTCAGA
AATATCAACCTACTAAGTGCATCCGGCGGAATGCGAAATAGCCTACTTGA
GAGGGAAAAGTAAGAGGGTGCAGTCAAAACACGTATGATATCCTCAATCC
ATAAAGCCTGCGGAACTGAATTACTTCGTGGAAACGTTTTGTTCCTGAAG
CTCTCGCGAAACAATCGATGGATATAAGTCGTAGTCGGGGTTTTGTTTCT
CGTCTGGGTGTAGTATGAATAAAACTGAACGAGTATTAACAACAGTAGTT
TAAAGAAAAACCAGAACGCGCCTATACCTTCTGAGCATCCTCCAGTCAGA
AGAAAAAATGTCAAAACGTTTAGGTGGGATCAAAGGTTGTGCTATTTGCC
CTCGAGCTAAGTCCAGATACACGAGACTGAACGGAAACATAAGACGCCAA
AGCACGACTAACAACATACCGGTATCGGTAAAAATCGATAGATAAGGGAT
CAATACAACAGCAGTAGTGTCAAATCACAGAAAAAAAGTACTGATGACAA
AAAAACGTGAGAGGACGAAAAGCATTATACCTATTAATAGAATGCAATAC
AACGCGGAAATTAACACGGCGAGGAACTCATAACCGGCGACTGCCAAAAA
TAAATACATCATTAGAGAAAAAACACCTAAATTTAAAATAAAAAAACTCG
ATATGATGACATAATAAACAAAAAATCAAGGAGAGGTACATGCGTATAAC
AAAAGGAGACGATAAGAAATGATAGGTGACGTGCTCGAAATTATTCCCAA
AGCTCAACCCTTATAAGGTGCTGTCACTGGGCCCCTACCCCGGTTTGCCC
CTTGCCTACATCATCTCCAGGAAGAAGAGTAATTTTCGCATTCTGCCGCG
CTTCACGTCGCGCCCCCAATGCAAAACGAGATATACCGCTCCACCCGACG
AGAGAGAGCAATATGCGTGGACGATATAAAATATCTGGAGGAGACGTTCT
TGTACTACTCCCCTCCGGCGCAGGTTGACATGACCCACACCCTCGGACCA
CACGGGTCACCCCATTAACTGGTCGCTTCGTGTCGCAGGAAAAACGCAAC
CTATCTTCTAGTAAGGCGATGGATGGCTGCTGTCTCGACTTCGCGCACCC
CTGTGAAGTCTCTATACGCCCGGAAGTCGGCACCAACGACGAATCCATGG
AAATGTTTCTTCGGGGAGGCCTTAGAGTGTACGACGGTAACATTTACTGG
CCGTATGGAGGCACTGGCTTCTTTTTGAGCGCAGGGCTTGTAGCAAGAAT
CC
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Coding sequence (CDS) from alignment at F-serratus_M_contig631:194236..198487-

>mRNA_F-serratus_M_contig631.17169.1 ID=mRNA_F-serratus_M_contig631.17169.1|Name=mRNA_F-serratus_M_contig631.17169.1|organism=Fucus serratus male|type=CDS|length=1494bp|location=Sequence derived from alignment at F-serratus_M_contig631:194236..198487- (Fucus serratus male)
ATTCTTTTGCTGGCAGCACTCGCCCTATTATGCCACAATTGCCTTGGTAC
TGGAGGCGAGCATAACACCTCGCCGGCGGAATATATCAAGGCGGATATCT
CTCCCGATAGAGAAGCTGAGGGGGCAACGAACTCACCGCGAATTCTCACG
GTGCTCACTACCTACAATAAACGGACGCCGTTCATTAAGGCCTACCGTGA
AGCAGCTGCTGGCCGAGAAGATGGATTGGATCCTTTGATTCTTTTGCTGG
CAGCACTCGCCCTATTATGCCACAATTGCCTTGGTACTGGAGGCGAGCAT
AACACCTCGCCGGCGGAATATATCAAGGCGGATATCTCTCCCGATAGAGA
AGCTGAGGGGGCAACGAACTCACCGCGAATTCTCACGGTGCTCACTACCT
ACAATAAACGGACGCCGTTCATTAAGGCCTACCGTGAAGCAGCTGCTGGC
CGAGAAGATGGATTGGATCCTTTGATATTTGTCACCAGTGATGAGGAGGA
TATCGATCAAGACGGCGTTGTCGACTACAAGTTCGGAGAACCTACCCACC
ATCGACTGTTGGCAGCAATACATGAGATATTTGTCACCAGTGATGAGGAG
GATATCGATCAAGACGGCGTTGTCGACTACAAGTTCGGAGAACCTACCCA
CCATCGACTGTTGGCAGCAATACATGAGTCAAATTCGAGGTATAAAGGCC
AGTTCGACTGGATTGCCGCTGGAGACGACGACACGGTCTTCATGTACAGA
CGCGCCATGGCCTTTCTCCGACACATCGACCCCACACTGTCAAATTCGAG
GTATAAAGGCCAGTTCGACTGGATTGCCGCTGGAGACGACGACACGGTCT
TCATGTACAGACGCGCCATGGCCTTTCTCCGACACATCGACCCCACACTG
CCTATAGCAATCGGGATTGCGCACGGTTTCTGCCAACAGCCCAAAGGGCC
GATTAGGGGACAGTGTGACTGCTTTACCCCCGAGCCTATAGCAATCGGGA
TTGCGCACGGTTTCTGCCAACAGCCCAAAGGGCCGATTAGGGGACAGTGT
GACTGCTTTACCCCCGAGGAAAAACGCAACCTATCTTCTAGTAAGGCGAT
GGATGGCTGCTGTCTCGACTTCGCGCACCCCTGTGAAGTCTCTATACGCC
CGGAAGTCGGCACCAACGACGAATCCATGGAAATGTTTCTTCGGGGAGGC
CTTAGAGTGTACGACGGTAACATTTACTGGCCGTATGGAGGCACTGGCTT
CTTTTTGAGCGCAGGGCTTGTAGCAAGAATCGAAAAACGCAACCTATCTT
CTAGTAAGGCGATGGATGGCTGCTGTCTCGACTTCGCGCACCCCTGTGAA
GTCTCTATACGCCCGGAAGTCGGCACCAACGACGAATCCATGGAAATGTT
TCTTCGGGGAGGCCTTAGAGTGTACGACGGTAACATTTACTGGCCGTATG
GAGGCACTGGCTTCTTTTTGAGCGCAGGGCTTGTAGCAAGAATC
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